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Research Publications

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In Press

  • Kumar, R.; Chaudhary, K.; Sharma, M.; Nagpal, G.; Chauhan, J.S.; Singh, S.; Gautam, A. and Raghava, G.P.S.AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. Nucleic Acids Res.  
  • Tyagi, A.; Tuknait, A.; Anand, P.; Gupta, S.; Sharma, M.; Mathur, D.; Joshi, A.; Singh, S.; Gautam, A. and Raghava, G.P.S.CancerPPD: a database of anticancer peptides and proteins.  Nucleic Acids Res., 2014.  
  • Tomar, R.; Sharma, P.; Srivastava, A.; Bansal, S.; Ashish and Kundu, B.Structural and functional insights into an archaealL-asparaginase obtained through the linker-less assembly of constituent domains. Acta Crystallogr. D Biol. Crystallogr., 2014.  
  • Singh, N. and Kumar, A. Virulence factor SenX3 is the oxygen-controlled replication  switch of Mycobacterium tuberculosis. Antioxidants and Redox Signalling., 2014. 
  • Gowthaman, U.; Mushtaq, K.; Tan, A.C.; Rai, P.K.; Jackson, D.C. and Agrewala, J.N.Challenges and solutions for a rational vaccine design for TB-endemic regions. Crit. Rev. Microbiol., 2014.  
  • Mahajan, S.; Saini, A.; Kalra, R. and Gupta, P.Frienemies of infection: A chronic case of host nuclear receptors acting as cohorts or combatants of infection. Crit. Rev. Microbiol., 2014.  
  • Chodisetti, S.B.; Gowthaman, U.; Rai, P.K.; Vidyarthi, A.; Khan, N. and Agrewala, J.N.Triggering Through Toll-like Receptor 2 Limits Chronically Stimulated T-helper Type 1 Cells From Undergoing Exhaustion. J. Infect. Dis. . 
  • Chopra, L.; Singh, G.; Jena, K.K.; Verma, H. and Sahoo, D.K. 2014. Bioprocess     development for the production of sonorensin by Bacillus sonorensis MT93 and     its application as a food preservative. Bioresource Technology, 2014. . 
  • Suneet Kaur, Gautam Srivastava, R. N. Sharma and Ravinder S. Jollyimmunosuppressive agent Caerulomycin A exerts its effect by depleting cellular iron content. British Journal of Pharmacology  
  • Dkhar, H.K.; Gopalsamy, A.; Loharch, S.; Kaur, A.; Bhutani, I.; Saminathan, K.; Bhagyaraj, E.; Chandra, V.; Swaminathan, K.; Agrawal, P.; Parkesh, R. and Gupta, P.Discovery of Mycobacterium tuberculosis α-1,4-glucan branching enzyme (GlgB) inhibitors by structure and ligand based virtual screening. J. Biol. Chem., 2014.  
  • Solanki, A.K.; Rathore, Y.S.; Badmalia, M.D.; Dhoke, R.R.; Nath, S.K.; Nihalani, D. and Ashish.Global shape and ligand binding efficiency of the HIV-1 neutralizing antibodies differs from the ones which cannot neutralize. J. Biol. Chem., 2014.  
  • Solanki, A.K.; Rathore, Y.S.; Badmalia, M.D.; Dhoke, R.R.; Nath, S.K.; Nihalani, D. and Ashish.Global shape and ligand binding efficiency of the HIV-1 neutralizing antibodies differs from the ones which cannot neutralize. J. Biol. Chem., 2014.  
  • Loharch, S.; Isha.; Jain, K.; Gupta, P.; Sahoo, D.K. and  Parkesh, R.EpiDBase:a manually curated database of epigenetic landscape. Database, 2014. 
  • Gautam, A.; Sharma, M.; Vir, P.; Chaudhary, K.; Kapoor, P.; Kumar, R.; Nath, S.K. and Raghava, G.P.S. Identification and characterization of novel protein derived arginine-rich cell penetrating peptides. Eur. J. Pharm. Biopharm., 2014.  
  • Mehta, D.; Anand, P.; Kumar, V.; Joshi, A.; Mathur, D.; Singh, S.; Tuknait, A.; Chaudhary, K.; Gautam, S.K.; Gautam, A.; Varshney, G.C. and Raghava, G.P.S.ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures. Database (Oxford)., 2014.  
  • Das, S.; Ghosh, A.K.; Singh, S.; Saha, B.; Ashish and Das, P.UnmethylatedCpG-motifs in the L. donovani DNA regulate TLR9-dependent delay of programmed cell death in macrophages J Leuk Biol., 2014.  
  • Singh, P.K.; Solanki, V.; Sharma, S.; Thakur, K.G.; Krishnan, B. and Korpole, S.The intramolecular disulfide-stapled structure of laterosporulin, a class IIdbacteriocin, conceals a human defensin-like structural module. FEBS J., 2014.  
  • Dureja, C.; Mahajan, S. and Chaudhuri, S.R.Phylogenetic distribution and prevalence of genes encoding class I integrons and CTX-M-15 extended-spectrum- β-lactamases in Escherichia coli isolates from healthy humans in Chandigarh, India. PLoS One.  
  • Bhutani, I., Gupta, P.; Madathil, R.; and Parkesh, R.Structure, dynamics, and interaction of DprE1 and DprE2 examined by molecular modeling, simulation, and electrostatic studies. Plos one.  
  • Singh, A.K.; Singh, M.; Pandya, V.K.; G .L. B.; Singh, V.; Ekka, M.K.; Mittal, M. and Kumaran, S.Molecular Basis of Peptide Recognition in Metallopeptidase, Dug1p from Saccharomyces cerevisiae. Biochemistry.   Ishaq, M.; Khan, M.A.; Sharma, K.; Sharma, G.; Dutta, R.K. and Majumdar, S.Gambogic acid induced oxidative stress dependent caspase activation regulates both apoptosis and autophagy by targeting various key molecules (NF-κB, Beclin-1, p62 and NBR1) in human bladder cancer cells.  Biochim. Biophys. Acta.  
  • Dhar, J.; Chakrabarti, P.; Saini, H.; Raghava, G.P. and Kishore, R.ω-Turn: A novel β-turn mimic in globular proteins stabilized by main-chain to side-chain CH···O interaction. Proteins.  
  • Singh, N.S.; Kachhap, S.; Singh, R.; Mishra, R. C.; Singh B. and Chaudhuri, S.R.The length of glycine rich linker in DNA binding domain is critical for optimal functioning of quorum sensing master regulatory protein HapR. Mol. Genet. Genomics.  
  • Singh, P.K.; Sharma, S.; Kumari, A. and Korpole, S.A non-pediocin low molecular weight antimicrobial peptide produced by Pediococcuspentosaceus strain IE-3 shows increased activity under reducing environment. BMC Microbiol.  
  • Shukla, A. and Cameotra, S.S. Atomic Absorption Spectrophotometer: Principle, General description and Applications in Micro and Geo microbiology. Microbiology Applications.  Singh, R.; Anil Kumar, V.; Das, A.K.; Bansal, R. and  Sarkar, D.A transcriptional co-repressor regulatory circuit controlling the heat-shock response of Mycobacterium tuberculosis. Mol. Microbial.
  • Tuteja, S.; Sabherwal, P.; Deep, A.; Rastogi, R.; Paul, A. and  Suri, C.R.;Bio-functionalized rebar graphene (f-RG) for label free detection of cardiac marker troponin I.  ACS Applied Materials and Interfaces. 
  • Srivastava, G.;   Pal,M.;    Kaur, S. and jolly, R.S. A highly efficient designer cell for enantioselective reduction of ketones. Catal. Sci. Technol. 
  • Ishaq, M.; Khan, M.A.; Sharma, K.; Sharma, G.; Dutta, R.K. and Majumdar, S.Gambogic acid induced oxidative stress dependent caspase activation regulates both apoptosis and autophagy by targeting various key molecules (NF-κB, Beclin-1, p62 and NBR1) in human bladder cancer cells.  Biochim. Biophys. Acta. 
  • Sharma, G.; Dutta, R.K.; Khan, M.A.; Ishaq, M.; Sharma, K.; Malhotra, H. and Majumdar, S.IL-27 inhibits IFN-γ induced autophagy by concomitant induction of JAK/PI3 K/Akt/mTOR cascade and up-regulation of Mcl-1 in Mycobacterium tuberculosis H37Rv infected macrophages. Int. J. Biochem. Cell. Biol.  Malhotra,A.;  Sharma, N.;  Navdezda;  Kumar, N.; Dolma, K.;  Sharma, D.; Nandanwar, H.S.  and Choudhury, A.R.Multi-analytical approach to understand biomineralization of gold using rice bran: a novel and economical route. RSC Advances.
  • Sheokand, N.;  Malhotra, H.; Kumar, S.; Tillu, V.A.; Chauhan, A.S.; Raje, C.I. and  Raje M.Moonlighting cell surface GAPDH recruits Apo Transferrin to effect iron egress from mammalian cells. J. Cell. Sci.  Maurya, N.; Gujar, R.; Gupta, M.; Yadav, V.; Verma, S. and Sen, P.Immunoregulation of dendritic cells by the receptor T cell immunoglobulin and mucin protein -3 (TIM-3) via bruton’s tyrosine kinase and c-Src. J. Immunol.
  • Singla, A.K.; Gurram, R.K.; Chauhan, A.;  Khatri, N.; Vohra, R.M.;  Jolly, R.S. and Agrewala, J.N.Caerulomycin A suppresses immunity by inhibiting T cells activity. PLoS One. Sabherwal, P.; Shorie, M.;  Pathania, P.; Chaudhary, S.; Bhasin, K.; Bhalla, V. and Suri, C.R.A hybrid aptamer-antibody linked FRET based detection of trinitrotoluene. Analytical Chemistry. Vaishampayan, P.; Roberts, A.;  Augustus,A.;  Pukall, R.; Schumann, P.; schwendner, P.;  Shanmugam, Mayilraj;  Salmassi, T.  and kasthuri VenkateswaranDeinococcus phoenicis sp. nov., an extreme ionizing radiation resistant bacterium isolated from the Phoenix Lander assembly facility. Int. J. Sys. Evol  Kaur H, Singh S, Rathore YS, Sharma A, Furukawa K, Hohmann S, Fnu A, Mondal AK.Differential Role of HAMP-like Linkers in Regulating the Functionality of the Group III Histidine Kinase DhNik1p. J. Biol. Chem. 
  • Gurram RK, Kujur W, Maurya SK, Agrewala JN.Caerulomycin A enhances the TGF-β-Smad3 signalling by suppressing IFN-γ-STAT1 signalling to expand Tregs. J. Biol. Chem. 
  • Dkhar HK, Nanduri R, Mahajan S, Dave S, Saini A, Somavarapu AK, Arora A, Parkesh R, Thakur KG,Mayilraj S, Gupta P.Mycobacterium tuberculosis Keto-Mycolic Acid and Macrophage Nuclear Receptor TR4 Modulate Foamy Biogenesis in Granulomas: A Case of a Heterologous and Noncanonical Ligand-Receptor Pair. J. Immunol. 
  • Mehta D, Anand P, Kumar V, Joshi A, Mathur D, Singh S, Tuknait A, Chaudhary K, Gautam SK, Gautam A, Varshney GC, Raghava GP.ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures. Database (Oxford). 
  • Gowthaman U, Mushtaq K, Tan AC, Rai PK, Jackson DC, Agrewala JN.Challenges and solutions for a rational vaccine design for TB-endemic regions. Crit. Rev. Microbiol.  
  • Manickam N, Singh NK, Bajaj A, Kumar RM, Kaur G, Kaur N, Bala M, Kumar A, Mayilraj S.Bacillus mesophilum sp. nov., strain IITR-54T, a novel 4-chlorobiphenyl dechlorinating bacterium. Arch Microbiol. 
  • Gautam A, Kapoor P, Chaudhary K, Kumar R, Raghava GP.Tumor Homing Peptides as Molecular Probes for Cancer Therapeutics, Diagnostics, and Theranostics. Curr. Med. Chem. 
  • Yadav IS, Singh H, Imran Khan M, Chaudhury A, Raghava GP, Agarwal SM.EGFRIndb: Epidermal Growth Factor Receptor Inhibitor Database. Anticancer Agents Med Chem. 
  • Abhay Bajaj, Shanmugam Mayilraj, Mohana Krishna Reddy Mudiam, Devendra Kumar Patel and Natesan Manickam.Isolation and functional analysis of a glycolipid producing Rhodococcus sp. strain IITR-03 with potential for degradation of 1,1,1-trichloro-2,2-bis (4-chlorophenyl) ethane-DDT.   Bioresource Technol. 
  • Navjot Kaur., Rajendran Mathan Kumar., Gurwinder Kaur and Shanmugam Mayilraj Isoptericola rhizophila sp. nov., a novel actinobacterium isolated from rhizosphere soil. Papers In Press; Antonie van Leeuwenhoek  Gurwinder Kaur, Sathyaseelan Sathyabama, Amit Arora, Sheenam Verma, Nida Mubin, Javed N. Agrewala and Shanmugam Mayilraj (2014). Genome sequencing, annotation and comparative genomic analysis of Shigella dysenteriae strain SD1D. Gut Pathogens
  • Sathyaseelan Sathyabama, Gurwinder Kaur, Amit Arora, Sheenam Verma, Nida Mubin, Shanmugam Mayilraj and Javed N Agrewala.Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1. Gut Pathogens
  • Natesan Manickam, Nitin Kumar Singh, Abhay Bajaj, Rajendran Mathan Kumar,Gurwinder Kaur, Navjot Kaur, Monu Bala, Anand Kumar and Shanmugam Mayilraj . Bacillus mesophilum sp. nov., strain IITR‑54T, a novel 4‑chlorobiphenyl dechlorinating bacterium. Archives of Microbiology
  • Nitin Kumar Singh.,Chandandeep Kaur., Narender Kumar., Subramanian Velmurugan., Thavasimuthu Citarasu and Shanmugam Mayilraj. Bacillus aequororis sp. nov., strain M-8T isolated from marine sediment. Current Microbiology. Nitin Kumar Singh.,Chandandeep Kaur., Narender Kumar., Subramanian Velmurugan., Thavasimuthu Citarasu and Shanmugam Mayilraj Bacillus aequororis sp. nov., strain M-8T isolated from marine sediment. Papers In Press, Current Microbiology.  Jain, S.; Chodisetti, S.B. and  Agrewala, J.N.Correction: Combinatorial Signaling through TLR-2 and CD86 Augments Activation and Differentiation of Resting B Cells. PLoS One.
  • Anirban Roy Choudhury; Ankit Malhotra; Paramita Bhattacharjee and Prasad, G.S.Facile and rapid thermo-regulated biomineralization of gold by pullulan and study of its thermodynamic parameters. Carbohydrate Polymers 
  • Dastager, S.G. Shan-Kun T.; Krishnamurthi S.; Jae-Chan L. and Wen-Jun Li. Kocuria indica sp nov., isolated from sediment sample. Int J Syst Evol Microbiol.  Nitin Kumar Singh, Indu Khatri, Srikrishna Subramanian and Shanmugam Mayilraj  Genome sequencing and annotation of Acinetobacter gerneri strain MTCC 9824T.  Elsevier: Genomics Data. Indu Khatri, Nitin Kumar Singh, Srikrishna Subramanian and Shanmugam Mayilraj Genome sequencing and annotation of Acinetobacter haemolyticus strain MTCC 9819T. Elsevier: Genomics Data. Indu Khatri, Nitin Kumar Singh, Srikrishna Subramanian and Shanmugam Mayilraj  Genome sequencing and annotation of Acinetobacter junii strain MTCC 11364. Elsevier: Genomics Data. Navjot Kaur, Amit Arora, Narender Kumar and Shanmugam Mayilraj  Genome sequencing and annotation of Laceyella sacchari strain GS 1-1, isolated from hot spring, Chumathang, Leh, India.  Elsevier: Genomics Data. Navjot Kaur, Shailesh Kumar and Shanmugam Mayilraj  Genome sequencing and annotation of Amycolatopsis vancoresmycina strain DSM 44592T. Elsevier: Genomics Data. Indu Khatri, Srikrishna Subramanian and Shanmugam Mayilraj  Genome sequencing and annotation of Amycolatopsis azurea  DSM 43854T.  Elsevier: Genomics Data. Kazuyuki Kimura, Shailesh Kumar, Masahiro Takeoand Shanmugam Mayilraj  Genome sequencing, annotation of Citrobacter freundii strain GTC 09479. Elsevier: Genomics Data. Choudhury, A. R.; Bhattacharjee, P. and Prasad, G. S. Development of Suitable Solvent System for Downstream Processing of Biopolymer Pullulan Using Response Surface Methodology. PLOS ONE 
  • Mehta, Ananya.;  Prasad, G.S. and Choudhury, A. R.Cost effective production of pullulan from agri-industrial residues using response surface methodology. International Journal of Biological Macromolecules Kumar, S.; Kanudia, P.; Karthokeyan, S. and Chakraborti P.K.Identification of crucial amino acids of bacterial peptide deformylases affecting enzymatic activity in response to oxidative stress. J. Bacteriology
  • Aneja, R.; Datt, M.; Yadav, S. and Sahni, G.Multiple exosites distributed across the three domains of streptokinase co-operate to generate high catalytic rates in the streptokinase-plasmin activator complex. Biochemistry.
  • Kaur, C.; Pinnaka, A.K.; Singh, N.K.; Bala, M. and Shanmugam Mayilraj Agromyces arachidis sp. nov., isolated from a peanut (Arachis hypogaea) crop field. Int. J. Microbiol.         
  • Singh, N.K.; Khatri, I.; Subramanian, S.  and Shanmugam MayilrajGenome sequencing and annotation of Acinetobacter gyllenbergii strain MTCC 11365T. Genomics Data.
  • Singh, N.K.; Khatri, I.; Subramanian, S.  and Shanmugam MayilrajGenome sequencing and annotation of Acinetobacter guillouiae strain MSP 4-18. Genomics Data.  Ansari, Md. A.; Khan, H.M.; Khan, A.A.; Ahmad, Md. K.; Mahdi, A.A.; Pal, R. and Cameotra, S.S.Interaction of silver nanoparticles with Escherichia coli and their cell envelope biomolecules. J. Basic Microbiology.
  • Khan, Md. S. A.; Ahmad, I.; and Cameotra, S.S.Phenyl aldehyde and propanoids exert multiple sites of action towards cell membrane and cell wall targeting ergosterol in Candida albicans. AMB Express.
  • Noorpreet, I.; Kaur, D.; Kaur, P.; Sud, D. and Cameotra, S.S.Persistence and Biodegradation of Quinalphos using Soil Microbes. Water  Environment.
  • Dhanjal, S.; Singh, A.K. and Cameotra, S. S.Global gene expression analysis of bacterial stress response to elevated concentrations of toxic metalloids-Selenium and Arsenic. Geomicrobiology Malhotra, A.; Dolma, K.;  Kaur, N.; Rathore, Y.S.; Ashish, S. Mayilraj and Choudhury, A.R.Biosynthesis of gold and silver nanoparticles using a novel marine strain of Stenotrophomonas.  Bioresource Technology 

2014

  • Boradia, V.M.; Malhotra, H.; Thakkar, J.S.; Tillu, V.A.; Vuppala, B.; Patil, P.; Sheokand, N.; Sharma, P.; Chauhan, A.S.; Raje, M. and Raje, C.I.
  • Mycobacterium tuberculosis acquires iron by cell-surface sequestration and internalization of human holo-transferrin. Nat. Commun., 5, 4730, 2014.
  • Sheokand, N.; Malhotra, H.; Kumar, S.; Tillu, V.A.; Chauhan, A.S.; Raje, C.I. and Raje, M.
  • Moonlighting cell-surface GAPDH recruits apotransferrin to effect iron egress from mammalian cells. J. Cell Sci., 127, 4279-4291, 2014.
  • Shukla, J.; Gupta, R.; Thakur, K.G.; Gokhale, R. and Gopal, B.
  • Structural basis for the redox sensitivity of the Mycobacterium tuberculosis SigK-RskA σ-anti-σ complex. Acta Crystallogr. D Biol. Crystallogr, 70, 1026-1036, 2014. 
  • Priyanka, Shorie, M.; Bhalla, V.; Pathania, P. and Suri, C.R.
  • Nanobioprobe mediated DNA aptamers for explosive detection. Chem. Commun. (Camb)., 50, 1080-1082, 2014.
  • Sathyabama, S.; Khan, N. and Agrewala, J.N.
  • Friendly pathogens: prevent or provoke autoimmunity. Crit. Rev. Microbiol., 40, 273-280, 2014. 
  • Tuteja, S.K.; Sabherwal, P.; Deep, A.; Rastogi, R.; Paul, A.K. and Suri, C.R.
  • Biofunctionalized rebar graphene (f-RG) for label-free detection of cardiac marker troponin I. ACS Appl. Mater. Interfaces., 6, 14767-14771, 2014. 
  • Sabherwal, P.; Shorie, M.; Pathania, P.; Chaudhary, S.; Bhasin, K.K.; Bhalla, V. and Suri, C.R.
  • Hybrid aptamer-antibody linked fluorescence resonance energy transfer based detection of trinitrotoluene. Anal Chem., 86, 7200-7204, 2014.
  • Siddiqui, K.F.; Amir, M.; Gurram, R.K.; Khan, N.; Arora, A.; Rajagopal, K. and Agrewala, J.N.
  • Latency-associated protein Acr1 impairs dendritic cell maturation and functionality: a possible mechanism of immune evasion by Mycobacterium tuberculosis. J. Infect. Dis.,  209, 1436-1445, 2014.
  • Bajaj, A.; Mayilraj, S.; Mudiam, M.K.; Patel, D.K. and Manickam, N.
  • Isolation and functional analysis of a glycolipid producing Rhodococcus sp. strain IITR03 with potential for degradation of 1,1,1-trichloro-2,2-bis(4-chlorophenyl)ethane (DDT). Bioresource Technology, 167, 398-406, 2014.
  • Dkhar, H.K.; Nanduri, R.; Mahajan, S.; Dave, S.; Saini, A.; Somavarapu, A.K.; Arora, A.; Parkesh, R.; Thakur, K.G.; Mayilraj, S. and Gupta, P.
  • Mycobacterium tuberculosis keto-mycolic acid and macrophage nuclear receptor TR4 modulate foamy biogenesis in granulomas: a case of a heterologous and noncanonical ligand-receptor pair. J. Immunol., 193, 295-305, 2014.
  • Maurya, N.; Gujar, R.; Gupta, M.; Yadav, V.; Verma, S. and Sen, P.
  • Immunoregulation of dendritic cells by the receptor T cell Ig and mucin protein-3 via Bruton's tyrosine kinase and c-Src. J. Immunol.,193, 3417-3425, 2014.
  • Singh, R.; Vijjamarri, A. K.; Das, A. K.; Bansal, R. and Sarkar, D.
  • A transcriptional co-repressor regulatory circuit controlling the heat-shock response of Mycobacterium tuberculosis. Molecular Microbiology, 94, 450-465, 2014.
  • Pandey, S.K.; Vinayaka, A.C.; Rishi, D.B.; Rishi, P. and Suri, C.R.
  • Immuno-fluorescence based Vi capsular polysaccharide detection for specific recognition of Salmonella entericaserovarTyphi in clinical samples. Anal. Chim. Acta., 841, 51-57, 2014.
  • Tuteja, S.K.; Priyanka, Bhalla, V.; Deep, A.; Paul, A.K. and Suri, C.R.
  • Graphene-gated biochip for the detection of cardiac marker Troponin I. Anal. Chim. Acta., 809, 148-154, 2014.
  • Gurram, R.K.; Kujur, W.; Maurya, S.K. and Agrewala, J.N.
  • Caerulomycin A enhances transforming growth factor-β (TGF-β)-Smad3 protein signaling by suppressing interferon-γ (IFN-γ)-signal transducer and activator of transcription 1 (STAT1) protein signaling to expand regulatory T cells (Tregs). J. Biol. Chem., 289,17515-17528, 2014.
  • Kaur, H.; Singh, S.; Rathore, Y.S.; Sharma, A.; Furukawa, K.; Hohmann, S.; Ashish, and Mondal, A.K.
  • Differential role of HAMP-like linkers in regulating the functionality of the group III histidine kinase DhNik1p. J. Biol. Chem., 289, 20245-20258, 2014.
  • Arif, E.; Rathore, Y.S.; Kumari, B.; Ashish, F.; Wong, H.N.; Holzman, L.B. and Nihalani, D.
  • Slit diaphragm protein Neph1 and its signaling: a novel therapeutic target for protection of podocytes against glomerular injury. J. Biol. Chem., 289, 9502-9518, 2014.
  • Kaur, H.; Singh, S.; Rathore, Y.S.; Sharma, A.; Furukawa, K.; Hohmann, S.; Ashish, and Mondal, A.K.
  • Differential role of HAMP-like linkers in regulating the functionality of the group III histidine kinase DhNik1p. J. Biol. Chem., 289, 20245-20258, 2014. 
  • Arif, E.; Rathore, Y.S.; Kumari, B.; Ashish, F.; Wong, H.N.; Holzman, L.B. and Nihalani, D.
  • Slit diaphragm protein Neph1 and its signaling: a novel therapeutic target for protection of podocytes against glomerular injury. J. Biol. Chem., 289, 9502-9518, 2014. 
  • Mushtaq, K.; Chodisetti, S.B.; Rai, P.K.; Maurya, S.K.; Amir, M.; Sheikh, J.A. and Agrewala, J.N.
  • Decision-making critical amino acids: role in designing peptide vaccines for eliciting Th1 and Th2 immune response. Amino Acids., 46, 1265-1274, 2014.
  • Sharma, G.; Dutta, R.K.; Khan, M.A.; Ishaq, M.; Sharma, K.; Malhotra, H. and Majumdar, S.
  • IL-27 inhibits IFN-γ induced autophagy by concomitant induction of JAK/PI3 K/Akt/mTOR cascade and up-regulation of Mcl-1 in Mycobacterium tuberculosis H37Rv infected macrophages. Int. J. Biochem. Cell. Biol., 55, 335-347, 2014.
  • Singh, A.K.; Rautela, R. and Cameotra, S.S.
  • Substrate dependent in vitro antifungal activity of Bacillus sp strain AR2. Microb. Cell Fact., 13, 67, 2014.
  • Singh, A.K.; Dhanjal, S. and Cameotra, S.S.
  • Surfactin restores and enhances swarming motility under heavy metal stress. Colloids Surf. B. Biointerfaces., 116, 26-31, 2014.
  • Malhotra, A.; Sharma, N.; Kumar, N.; Dolma, K.; Sharma, D.; Nandanwar, H. and Choudhury, A.R.
  • Multi-analytical approach to understand biomineralization of gold using rice bran: a novel and economical route. RSC Advances., 4, 39484-39490, 2014.
  • Choudhury, A.R.; Malhotra, A.; Bhattacharjee, P. and Prasad, G.S.
  • Facile and rapid thermo-regulated biomineralization of gold by pullulan and study of its thermodynamic parameters. Carbohydr. Polym., 106,154-159, 2014.
  • Chopra, L.; Singh, G.; Choudhary, V. and Sahoo, D.K.
  • Sonorensin: an antimicrobial peptide, belonging to the heterocycloanthracin subfamily of bacteriocins, from a new marine isolate, Bacillus sonorensis MT93. Appl. Environ. Microbiol., 80, 2981-2990, 2014.
  • Midha, S. and Patil, P.B
  • Genomic Insights into the Evolutionary Origin of Xanthomonasaxonopodispv. citri and Its Ecological Relatives. Appl. Environ. Microbiol., 80 6266-6279, 2014.
  • Mehta, A.; Prasad, G.S. and Choudhury, A.R.
  • Cost effective production of pullulan from agri-industrial residues using response surface methodology. Int. J. Biol. Macromol., 64, 252-256, 2014.
  • Boradia, V.M.; Raje, M. and Raje, C.I.
  • Protein moonlighting in iron metabolism: glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Biochem. Soc. Trans., 42, 1796-1801, 2014.
  • Kaur, R.; Ramesh, M.; Bharatam, P.V. and Kishore, R.
  • Self-association behavior of a novel nonproteinogenic β-strand-mimic in an organic solvent. J. Phys. Chem. B., 118, 9199-9208, 2014.
  • Pandey, K.; Dhoke, R.R.; Rathore, Y.S.; Nath, S.K.; Verma, N.; Bawa, S. and Ashish.
  • Low pH overrides the need of calcium ions for the shape-function relationship of calmodulin: resolving prevailing debates. J. Phys. Chem. B., 118, 5059-5074, 2014. 
  • Kaur, G. and Subramanian, S.Repurposing TRASH: emergence of the enzyme organomercuriallyase from a non-catalytic zinc finger scaffold. J. Struct. Biol., 188, 16-21, 2014.
  • Srinivasan, V.B.; Singh, B.B.; Priyadarshi, N.; Chauhan, N.K. and Rajamohan, G.
  • Role of novel multidrug efflux pump involved in drug resistance in Klebsiellapneumoniae. PLoS One., 9, e96288, 2014.
  • Kumar, S.; Sharma, P.; Arora, K.; Raje, M. and Guptasarma, P.
  • Calcium binding to beta-2-microglobulin at physiological pH drives the occurrence of conformational changes which cause the protein to precipitate into amorphous forms that subsequently transform into amyloid aggregates. PLoS One., 9,  e95725, 2014.
  • Singla, A.K.; Gurram, R.K.; Chauhan, A.; Khatri, N.; Vohra, R.M.; Jolly, R.S. and Agrewala, J.N.
  • Caerulomycin A suppresses immunity by inhibiting T cell activity. PLoS One., 9: e107051, 2014.
  • Singh, A.; Vaidya, B.; Khatri, I.; Srinivas, T.N.; Subramanian, S.; Korpole, S. and Pinnaka, A.K.
  • GrimontiaindicaAK16(T), sp. nov., isolated from a seawater sample reports the presence of pathogenic genes similar to Vibrio genus. PLoS One., 9: e85590, 2014. 
  • Mehta, A.; Sidhu, C.; Pinnaka, A.K. and Choudhury, A. R.
  • Extracellular Polysaccharide Production by a Novel Osmotolerant Marine Strain of Alteromonasmacleodii and Its Application towards Biomineralization of Silver. PLoS One., 9:e98798, 2014.
  • Singh, H.; Singh, S. and Raghava, G.P.S.
  • Evaluation of protein dihedral angle prediction  methods. PLoS One., 9: e10566, 2014.
  • Chauhan, J.S.; Dhanda, S.K.; Singla, D.; Open Source Drug Discovery Consortium, Agarwal, S.M. and Raghava G.P.S.
  • QSAR-based models for designing quinazoline/imidazothiazoles/pyrazolopyrimidines based inhibitors against wild and mutant EGFR. PLoS One., 9: e101079, 2014.
  • Agrawal, P.; Gupta, P.; Swaminathan, K. and Parkesh, R.
  • α-Glucan Pathway as a Novel Mtb Drug Target: Structural Insights and Cues for Polypharmcological Targeting of GlgB and GlgE. Curr. Med. Chem., 21, 4074-4084, 2014.
  • Lohan, S.; Cameotra, S.S. and Bisht, G.S.
  • Antibacterial evaluation of structurally amphipathic, membrane active small cationic peptidomimetics: synthesized by incorporating 3-amino benzoic acid as peptidomimetic element. Eur. J. Med. Chem., 83, 102-115, 2014.
  • Lohan, S.; Monga, J.; Cameotra, S.S. and Bisht, G.S.
  • In vitro and in vivo antibacterial evaluation and mechanistic study of ornithine based small cationic lipopeptides against antibiotic resistant clinical isolates. Eur. J. Med. Chem., 88, 19-27, 2014.
  • Kaur, G.; Dutta, D. and Thakur, K.G.
  • Crystal structure of Mycobacterium tuberculosis CarD, an essential RNA polymerase binding protein, reveals a quasidomain-swapped dimeric structural architecture. Proteins., 82, 879-884, 2014. 
  • Lohan, S.; Kalanta, A.; Sonkusre, P.; Cameotra, S.S. and Bisht, G.S.
  • Development of novel membrane active lipidatedpeptidomimetics active against drug resistant clinical isolates. Bioorg. Med. Chem., 22, 4544-4552, 2014.
  • Sharma, D.; Mayilraj, S and Manhas, R.K.
  • Streptomyces amritsarensis sp. nov.,exhibitingbroad-spectrum antimicrobial activity.  Antonie. Van. Leeuwenhoek, 105, 943-949, 2014.
  • Dastager, S.G.; Mawlankar, R.; Krishnamurthi, S.; Ramana, V  and Shouche, Y. Bacillus enclensis sp. nov.isolated from marine sediment. Antonie. Van. Leeuwenhoek J. Microbiol. 105, 199-206, 2014. 
  • Dastager, S.G.; Mawlankar, R.; Krishnamurthi S.; Shan-Kun T.; Jae-Chan L.; Venkata R. and Shouche, Y.S.
  • Fictibacillusenclensis sp. nov., isolated from marine sediment. Antonie. Van. Leeuwenhoek J. Microbiol., 105, 461-469, 2014.
  • Kaur, N.; Kumar, R.M.; Kaur, G. and Mayilraj, S.
  • Isoptericolarhizophila sp. nov., a novel actinobacterium isolated from rhizosphere soil. Antonie. Van. Leeuwenhoek., 106, 301-307, 2014.
  • Rautela, R.; Singh, A.K.;Shukla, A. and Cameotra, S.S.
  • Lipopeptides from Bacillus strain AR2 inhibits biofilm formation by Candida albicans. Antonie. Van. Leeuwenhoek., 105, 809-821, 2014.
  • Kumar, S.; Kanudia, P.; Karthikeyan, S. and Chakraborti, P.K.
  • Identification of crucial amino acids of bacterial Peptide deformylases affecting enzymatic activity in response to oxidative stress. J. Bacteriol., 196, 90-99, 2014.
  • Kaur, G.;Sengupta, S.; Kumar, V.; Kumari, A.; Ghosh, A.; Parrack, P. and Dutta, D.
  • Novel MntR-independent mechanism of manganese homeostasis in Escherichia coli by the ribosome-associated protein HflX. J. Bacteriol., 196, 2587-2597, 2014.
  • Kaur, G.; Sathyabama, S.; Arora, A.; Verma, S.; Mubin, N.; Agrewala, J.N. and Mayilraj, S.
  • Genome sequencing, annotation and comparative genomic analysis of Shigelladysenteriae strain SD1D. Gut Pathog., 6, 28, 2014.
  • Sathyabama, S.; Kaur, G.; Arora, A.; Verma, S.; Mubin, N.; Mayilraj, S. and Agrewala, J.N.
  • Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1. Gut Pathog., 6,8, 2014.
  • Kaur, S.; Yawar, M.; Pinnaka, A.K. and Korpole, S.
  • Hungatellaeffluvii gen. nov., sp. nov.an obligate anaerobic bacterium isolated from effluent treatment plant and reclassification of Clostridium hathewayi as Hungatellahathewayi comb. nov. Int. J. Syst. Evol. Microbiol., 64, 710-718, 2014.
  • Nupur, P.; Srinivas, T. N. R.; Takaichi, S. and Pinnaka, A.K.
  • Rhodovulum mangrovi sp. nov., a phototrophic alphaproteobacterium isolated from a sediment sample of Coringa mangrove forest, India. Int. J. Syst. Evol. Microbiol., 64, 3168-3173, 2014.
  • Panwar, B. and Raghava, G.P.S.
  • Prediction of uridine modifications in tRNA sequences. BMC Bioinformatics.,15, 326, 2014.
  • Sharma, A.; Singla, D.; Rashid, M. and Raghava, G.P.S.
  • Designing of peptides with desired half-life in intestine-like environment. BMC Bioinformatics., 15, 282, 2014.
  • Manickam, N.; Singh, N.K.; Bajaj, A.; Kumar, R.M.; Kaur, G.; Kaur, N.; Bala, M.; Kumar, A. and Mayilraj, S.
  • Bacillus mesophilum sp. nov., strain IITR-54T, a novel 4-chlorobiphenyl dechlorinating bacterium. Arch. Microbiol., 196, 517-523, 2014.
  • Singh, N.K.;Kaur, C.; Kumar, N.;Velmurugan, S.;Citarasu, T. and Mayilraj, S.
  • Bacillus aequororis sp. nov., Isolated From Marine Sediment. Curr. Microbiol., 69,758-762, 2014.
  • Khan, M.S.; Ahmad, I.; Cameotra, S.S. and Botha, F.
  • Sub-MICs of Carumcopticum and Thymus vulgaris influence virulence factors and biofilm formation in Candida spp. BMC Complement Altern. Med., 14, 337, 2014.
  • Dhanjal, N.I.;Kaur, P.;Sud, D. and Cameotra, S.S.
  • Persistence and biodegradation of quinalphos using soil microbes. Water Environ Res., 86, 457-461, 2014.
  • Khan, M.S.; Ahmad, I. and Cameotra, S.S.
  • Carumcopticum and Thymus vulgaris oils inhibit virulence in Trichophytonrubrum and Aspergillus spp. Braz. J. Microbiol., 45, 523-531, 2014.
  • Singla, A.K.; Gurram, R.K.; Chauhan, A.; Khatri, N.; Vohra, R.M.; Jolly, R.S. and Agrewala, J.N.
  • Cerulomycin A: a potent novel immunosuppressive agent. Transplantation., 97,e57-59, 2014.
  • Sonkusre, P.; Nanduri, R.; Gupta, P. and Cameotra, S.S.
  • Improved Extraction of Intracellular Biogenic Selenium Nanoparticles and their Specificity for Cancer Chemoprevention. J. Nanomed. Nanotechnol., 5, 194, 2014. Khatri, N.; Sagar, A.; Peddada, N.; Choudhary, V.; Chopra, B.S.; Garg, V.; Garg, R. and Ashish.Plasma Gelsolin Levels Decrease in Diabetic State and Increase upon Treatment with F-Actin Depolymerizing Versions of Gelsolin. Journal of Diabetes Research., 8, 2014. 

2013

  • Singh, M.; Kumar, P.; Yadav, S.; Gautam, R.; Sharma, N. and Karthikeyan, S.The crystal structure reveals the molecular mechanism of bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II (Rv1415) from Mycobacterium tuberculosis. Acta Crystallogr. Sect. D-Biol. Crystallogr. Ann. Microbiol., 69, 1633-1644, 2013. 
  • Mangal, M.; Sagar, P.; Singh, H.; Raghava, G.P.S. and Agarwal, S.M.NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database. Nucleic Acids Res., 41, D1124- D1129, 2013. 
  • Davidge, K.S. and Dikshit, K.L.Haemoglobins of Mycobacteria: Structural Features and Biological Functions. Adv.Microb.Physiol. 63, 147-194, 2013. 
  • Chodisetti, S.B.; Jain, S. and Agrewala, J.Cooperation of CD86 signaling with TLR-2 in the activation of resting B cells: a novel BCR independent pathway of stimulating B cells (P1126). J. Immunol., 190, 2013.
  •  Khan, N. and Agrewala, J.N.Immunomodulation through CD40 and TLR-4: an approach to control tuberculosis. J. Immunol., 190, 2013.
  •  Arif, E.; Mallik, L.; Rathore, Y.S.; Kumari, B.; Ostap, M.; Ashish, F.N.U.; Holzman, L.B. and Nihalani, D.Myo1c, an unconventional motor that maintains glomerular filtration function. Faseb J., 27, 2013.
  • Chopra, A.; Tuteja, S.; Sachdeva, N.; Bhasin, K.K.; Bhalla, V. and Suri, C.R.CdTe nanobioprobe based optoelectrochemical immunodetection of diabetic marker HbA1c. Biosens. Bioelectron., 44, 132-135, 2013. 
  • Sharma, P.; Tuteja, S.K.; Bhalla, V.; Shekhawat, G.; Dravid, V.P. and Suri, C.R.Bio-functionalized graphene-graphene oxide nanocomposite based electrochemical immunosensing. Biosens. Bioelectron. 39, 99-105, 2013. 
  • Tuli, A.; Thiery, J.; James, A.M.; Michelet, X.; Sharma, M.; Garg, S.; Sanborn, K.B.; Orange, J.S.; Lieberman, J. and Brenner, M.B.Arf-like GTPase Arl8b regulates lytic granule polarization and natural killer cell-mediated cytotoxicity, Mol. Biol. Cell, 24, 3721-3735, 2013. 
  • Sharma, G.; Kumar, N.; Weir, B.S.; Hyde, K.D. and Shenoy, B.D.The ApMat marker can resolve Colletotrichum species: a case study with Mangifera indica. Fungal Divers, 61, 117-138, 2013. 
  • Pal, S.; Choudhary, V.; Kumar, A.; Biswas, D.; Mondal, A.K. and Sahoo, D.K.Studies on xylitol production by metabolic pathway engineered Debaryomyces hansenii. Bioresour. Technol., 147, 449-455, 2013. 
  • Malhotra, A.; Dolma, K.; Kaur, N.; Rathore, Y.S.; Ashish; Mayilraj, S. and Choudhury, A.R.Biosynthesis of gold and silver nanoparticles using a novel marine strain of Stenotrophomonas. Bioresour. Technol., 142, 727-731, 2013.
  •  Srinivasan, V.B. and Rajamohan, G.KpnEF, a New Member of the Klebsiella pneumoniae Cell Envelope Stress Response Regulon, Is an SMR-Type Efflux Pump Involved in Broad-Spectrum Antimicrobial Resistance. Antimicrob. Agents Chemother., 57, 4449-4462, 2013. (IF 4.841) 
  • Agarwal, S.; Rastogi, R.; Gupta, D.; Patel, N.; Raje, M. and Mukhopadhyay, A.Clathrin-mediated hemoglobin endocytosis is essential for survival of Leishmania. Biochim. Biophys. Acta-Mol. Cell Res., 1833, 1065-1077, 2013. 
  • Yi, H.; Dey, S.; Kumaran, S.; Lee, S.G.; Krishnan, H.B. and Jez, J.M.Structure of Soybean Serine Acetyltransferase and Formation of the Cysteine Regulatory Complex as a Molecular Chaperone. J. Biol. Chem., 288, 36463 – 36472, 2013. 
  • Arya, S.; Sethi, D.; Singh, S.; Hade, M.D.; Singh, V.; Raju, P.; Chodisetti, S.B.; Verma, D.; Varshney, G.C.; Agrewala, J.N. and Dikshit, K.L.Truncated Hemoglobin, HbN, Is Post-translationally Modified in Mycobacterium tuberculosis and Modulates Host-Pathogen Interactions during Intracellular Infection. J. Biol. Chem., 288, 29987-29999, 2013.
  •  Das, A.K.; Kumar, V.A.; Sevalkar, R.R.; Bansal, R. and Sarkar, D.Unique N-terminal Arm of Mycobacterium tuberculosis PhoP Protein Plays an Unusual Role in Its Regulatory Function. J. Biol. Chem., 288, 29182-29192, 2013.
  •  Peddada, N.; Sagar, A.; Rathore, Y.S.; Choudhary, V.; Pattnaik, U.B.K.; Khatri, N.; Garg, R. and Ashish.Global Shapes of F-actin Depolymerization-competent Minimal Gelsolins INSIGHT INTO THE ROLE OF g2-g3 LINKER IN pH/Ca2+ INSENSITIVITY OF THE FIRST HALF. J. Biol. Chem., 288, 28266-28282, 2013.
  •  Ramesh, M.; Bharatam, P.V.; Venugopalan, P. and Kishore, R.Importance of C-H center dot center dot center dot O Intramolecular Hydrogen Bonding Across a Nonproteinogenic gamma-Aminobenzoic Acid Residue: Stabilization of a Flat beta-Strand-like Template. Cryst. Growth Des., 13, 2004-2012, 2013. 
  • Kumar, S.; Kasturia, N.; Sharma, A.; Datt, M. and Bachhawat, A.K.Redox-dependent stability of the gamma-glutamylcysteine synthetase enzyme of Escherichia coli: a novel means of redox regulation. Biochem. J., 449, 783-794, 2013. 
  • Chandra, V.; Mahajan, S.; Saini, A.; Dkhar, H.K.; Nanduri, R.; Raj, E.B.; Kumar, A. and Gupta, P.Human IL10 Gene Repression by Rev-erb alpha Ameliorates Mycobacterium tuberculosis Clearance. J. Biol. Chem., 288, 10692-10702, 2013. 
  • Sharma, P.; Kukkar, M.; Ganguli, A.K.; Bhasin, A. and Suri, C.R.Plasmon enhanced fluoro-immunoassay using egg yolk antibodies for ultra-sensitive detection of herbicide diuron. Analyst, 138, 4312-4320, 2013. 
  • Sablok, K.; Bhalla, V.; Sharma, P.; Kaushal, R.; Chaudhary, S. and Suri, C.R. Amine functionalized graphene oxide/CNT nanocomposite for ultrasensitive electrochemical detection of trinitrotoluene. J. Hazard. Mater., 248, 322-328, 2013. 
  • Vikram, S.; Pandey, J.; Kumar, S. and Raghava, G.P.S.Genes Involved in Degradation of para-Nitrophenol Are Differentially Arranged in Form of Non-Contiguous Gene Clusters in Burkholderia sp strain SJ98. Plos One., 8, e84766, 2013. 
  • Choudhury, A.R.; Bhattacharjee, P. and Prasad, G.S.Development of Suitable Solvent System for Downstream Processing of Biopolymer Pullulan Using Response Surface Methodology. PLoS One, 8, e77071, 2013. 
  • Singh, R.; Rathore, Y.S.; Singh, N.S.; Peddada, N.; Ashish and Raychaudhuri, S.Substitution of Glutamate Residue by Lysine in the Dimerization Domain Affects DNA Binding Ability of HapR by Inducing Structural Deformity in the DNA Binding Domain. PLoS One, 8, e76033, 2013. 
  • Gupta, S.; Kapoor, P.; Chaudhary, K.; Gautam, A.; Kumar, R. and Raghava, G.P.S.In Silico Approach for Predicting Toxicity of Peptides and Proteins. PLoS One, 8, e73957, 2013. 
  • Hoque, M.; Dave, S.; Gupta, P. and Saleemuddin, M.Oleic Acid May Be the Key Contributor in the BAMLET-Induced Erythrocyte Hemolysis and Tumoricidal Action. PLoS One, 8, 2013.
  • Kumar, S.; Vikram, S. and Raghava, G.P.S.Genome Annotation of Burkholderia sp SJ98 with Special Focus on Chemotaxis Genes. PLoS One, 8, e70624, 2013. 
  • Chauhan, J.S.; Rao, A. and Raghava, G.P.S.In silico Platform for Prediction of N-, O- and C-Glycosites in Eukaryotic Protein Sequences. PLoS One, 8, e67008, 2013. 
  • Singh, H.; Ansari, H.R. and Raghava, G.P.S.Improved Method for Linear B-Cell Epitope Prediction Using Antigen's Primary Sequence. PLoS One, 8, e62216, 2013.
  •  Kumar, R. and Raghava, G.P.S.Hybrid Approach for Predicting Coreceptor Used by HIV-1 from Its V3 Loop Amino Acid Sequence. PLoS One, 8, e61437, 2013.
  •  Jain, S.; Chodisetti, S.B. and Agrewala, J.N.Combinatorial Signaling through TLR-2 and CD86 Augments Activation and Differentiation of Resting B Cells. PLoS One, 8, e54392. Qureshi, A.; Thakur, N. and Kumar, M.HIPdb: A Database of Experimentally Validated HIV Inhibiting Peptides. PLoS One, 8, e54908, 2013.
  •  Dhanda, S.K.; Vir, P. and Raghava, G.P.S.Designing of interferon-gamma inducing MHC class-II binders. Biol. Direct, 8, 30, 2013. 
  • Dhanda, S.K.; Singla, D.; Mondal, A.K. and Raghava, G.P.S.DrugMint: a webserver for predicting and designing of drug-like molecules. Biol. Direct, 8, 28, 2013.
  •  Gupta, S.; Ansari, H.R.; Gautam, A. and Raghava, G.P.S.Identification of B-cell epitopes in an antigen for inducing specific class of antibodies Biol. Direct, 8, 27, 2013.
  •  Sheokand, N.; Kumar, S.; Malhotra, H.; Tillu, V.; Raje, C.I. and Raje, M.Secreted glyceraldehye-3-phosphate dehydrogenase is a multifunctional autocrine transferrin receptor for cellular iron acquisition. Biochim. Biophys. Acta-Gen. Subj., 1830, 3816-3827, 2013. 
  • Dhaunta, N.; Arora, K.; Chandrayan, S.K. and Guptasarma, P.Introduction of a thermophile-sourced ion pair network in the fourth beta/alpha unit of a psychophile-derived triosephosphate isomerase from Methanococcoides burtonii significantly increases its kinetic thermal stability. BBA-Proteins Proteomics, 1834, 1023-1033, 2013. 
  • Singla, D.; Dhanda, S.K.; Chauhan, J.S.; Bhardwaj, A.; Brahmachari, S.K. and Raghava, G.P.S.Open Source Software and Web Services for Designing Therapeutic Molecules. Curr. Top. Med. Chem., 13, 1172-1191, 2013.
  •  Roy, S.K.; Kumari, N.; Gupta, S.; Pahwa, S.; Nandanwar, H. and Jachak, S.M.7-Hydroxy-(E)-3-phenylmethylene-chroman-4-one analogues as efflux pump inhibitors against Mycobacterium smegmatis mc(2) 155. Eur. J. Med. Chem., 66, 499-507, 2013.
  •  Ghosh, M.; Solanki, A.K.; Roy, K.; Dhoke., R.R.; Ashish and Roy, S.Carrier protein influences immunodominance of a known epitope: Implication in peptide vaccine design. Vaccine, 31, 4682-4688, 2013. 
  • Sharma, N.; Prasad, G.S. and Choudhury, A.R.Utilization of corn steep liquor for biosynthesis of pullulan, an important exopolysaccharide. Carbohydr. Polym., 93, 95-101, 2013.
  •  Qureshi, A.; Thakur, N. and Kumar, M.VIRsiRNApred: a web server for predicting inhibition efficacy of siRNAs targeting human viruses. J. Transl. Med., 11, 305, 2013. 
  • Gautam, A.; Chaudhary, K.; Kumar, R.; Sharma, A.; Kapoor, P.; Tyagi, A. and Raghava, G.P.S.In silico approaches for designing highly effective cell penetrating peptides. J. Transl. Med., 11, 74, 2013.
  •  Ferrolino, M.C.; Zhuravleva, A.; Budyak, I.L.; Krishnan, B. and Gierasch, L.M.Delicate Balance between Functionally Required Flexibility and Aggregation Risk in a beta-Rich Protein. Biochemistry, 52, 8843-8854, 2013. 
  • Aneja, R.; Datt, M.; Yadav, S. and Sahni, GMultiple Exosites Distributed across the Three Domains of Streptokinase Co-Operate to Generate High Catalytic Rates in the Streptokinase-Plasmin Activator Complex, Biochemistry, 52, 8957-8968, 2013. 
  • Kumar, P.A.; Bhumika, V.; Ritika, C.; Bhaskar, Y.V.; Priyashanth, P.; Aravind, R.; Bindu, E. and Srinivas, T.N.R.Algoriphagus shivajiensis sp nov., isolated from Cochin back water, India. Syst. Appl. Microbiol., 36, 106-111, 2013. 
  • Krishnamurthi, S. and Chakrabarti, T.Diversity of Bacteria and Archaea from a landfill in Chandigarh, India as revealed by culture-dependent and culture-independent molecular approaches. Syst. Appl. Microbiol., 36, 56-68, 2013. 
  • Srinivas, T.N.R.; Bhaskar, Y.V.; Bhumika, V. and Kumar, P.A.Photobacterium marinum sp nov., a marine bacterium isolated from a sediment sample from Palk Bay, India. Syst. Appl. Microbiol., 36, 160-165, 2013. 
  • Singh, M.; Kumar, P. and Karthikeyan, S.Structural basis for pH dependent monomer-dimer transition of 3,4-dihydroxy 2-butanone-4-phosphate synthase domain from Mycobacterium tuberculosis. J. Struct. Biol., 181, 307, 2013. 
  • Bhatia, P.; Aureli, F.; D'Amato, M.; Prakash, R.; Cameotra, S.S.; Nagaraja, T.P. and Cubadda, F.Selenium bioaccessibility and speciation in biofortified Pleurotus mushrooms grown on selenium-rich agricultural residues. Food Chem., 140, 225-230, 2013. 
  • Singla, D.; Tewari, R.; Kumar, A. and Raghava, G.P.S.Designing of inhibitors against drug tolerant Mycobacterium tuberculosis (H37Rv). Chem. Cent. J., 7, 49, 2013. 
  • Dhanda, S.K.; Gupta, S.; Vir, P. and Raghava, G.P.S.Prediction of IL4 Inducing Peptides. Clin. Dev. Immunol., 263952, 2013.
  •  Mandal, S.M.; Sharma, S.; Pinnaka, A.K.; Kumari, A. and Korpole, S.Isolation and characterization of diverse antimicrobial lipopeptides produced by Citrobacter and Enterobacter. BMC Microbiol., 13, 152, 2013.
  •  Mohindra, V. Tripathi, R.K.; Singh, A. and Singh, B.Molecular characterization and expression analysis of a novel cystatin-like gene in a hypoxia-tolerant Indian catfish, Clarias batrachus [Linnaeus, 1758]. Fish Shellfish Immunol., 34, 683-687, 2013.
  •  Kaur, R, and Kishore, R.Isostructural unbranched alkyl-chains as tools for stabilizing -turn structure. Biopolymers, 99, 419-426, 2013. 
  • Sharma, D.R.; Wani, W.Y.; Sunkaria, A.; Kandimalla, R.J.L.; Verma, D.; Cameotra, S.S. and Gill, K.D.Quercetin Protects Against Chronic Aluminum-Induced Oxidative Stress and Ensuing Biochemical, Cholinergic, and Neurobehavioral Impairments in Rats. Neurotox. Res., 23, 336-357, 2013.
  •  Iquebal, M.A.; Sarika; Dhanda, S.K.; Arora, V.; Dixit, S.P.; Raghava, G.P.S.; Rai, A. and Kumar, D.Development of a model webserver for breed identification using microsatellite DNA marker. BMC Genet., 14, 118, 2013
  • . Ahmed, F.; Kaundal, R. and Raghava, G.P.S.PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. BMC Bioinformatics, 14, S9, 2013.
  •  Panwar, B.; Gupta, S. and Raghava, G.P.S.Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information. BMC Bioinformatics, 14, 44, 2013.
  •  Khatri, I.; Akhtar, A.; Kaur, K.; Tomar, R.; Prasad, G.S.; Ramya, T.N.C. and Subramanian, S.Gleaning evolutionary insights from the genome sequence of a probiotic yeast Saccharomyces boulardii Gut Pathogens, 5, 30, 2013.
  •  Khatri, I.; Mahajan, S.; Dureja, C.; Subramanian, S. and Raychaudhuri, S.Evidence of a new metabolic capacity in an emerging diarrheal pathogen: lessons from the draft genomes of Vibrio fluvialis strains PG41 and I21563. Gut Pathogens, 5, 20, 2013.
  •  Jain, R.; Sharma, D. and Kumar, R.Effects of alcohols on the stability and low-frequency local motions that control the slow changes in structural dynamics of ferrocytochrome c. J. Biochem., 154, 341-354, 2013. 
  • Singh, A.K. and Cameotra, S.S.Efficiency of lipopeptide biosurfactants in removal of petroleum hydrocarbons and heavy metals from contaminated soil. Environ. Sci. Pollut. Res., 20, 7367-7376, 2013
  • . Lohan, S.; Cameotra, S.S. and Bisht, G.S.Systematic Study of Non-Natural Short Cationic Lipopeptides as Novel Broad-Spectrum Antimicrobial Agents Chem. Biol. Drug Des., 82, 557-566, 2013.
  •  Ansari, M.A.; Khan, H.M.; Khan, A.A.; Pal, R. and Cameotra, S.S.Antibacterial potential of Al2O3 nanoparticles against multidrug resistance strains of Staphylococcus aureus isolated from skin exudates. J. Nanopart. Res., 15,10, 2013. 
  • Randhawa, A. and Mondal, A.K.The sixth HAMP domain negatively regulates the activity of the group III HHK containing seven HAMP domains. Biochem. Biophys. Res. Commun., 438, 140-144, 2013.
  •  Sagar, A.; Peddada, N.; Solanki, A.K.; Choudhary, V.; Garg, R. and AshishVisualizing the elusive open shape of G-actin in solution by SAXS data analysis. Biochem. Biophys. Res. Commun., 435, 740-744, 2013.
  •  Cameotra, S.S.Can microbes be patented? Biochem. Biophys. Res. Commun., 430, 448, 2013. 
  • Gupta, V.; Prasanna, R.; Cameotra, S.S.; Dureja, P.; Singh, R.N. and Sharma, J.Enhancing the production of an antifungal compound from Anabaena laxa through modulation of environmental conditions and its characterization. Process Biochem., 48, 768-774, 2013.
  •  Tripathi, R.; Kaithwas, V.; Dureja, C. and Raychaudhuri, S.Alanine-scanning mutagenesis of WH2 domains of VopF reveals residues important for conferring lethality in a Saccharomyces cerevisiae model. Gene, 525, 116-123, 2013. 
  • Nupur; Bhumika, V.; Srinivas, T.N.R. and Kumar, P.A.Flavobacterium nitratireducens sp nov., an amylolytic bacterium of the family Flavobacteriaceae isolated from coastal surface seawater. Int. J. Syst. Evol. Microbiol., 63, 2490-2496, 2013. 
  • Bhumika, V.; Srinivas, T.N.R.; Ravinder, K. and Kumar, P.A.Mariniradius saccharolyticus gen. nov., sp nov., a member of the family Cyclobacteriaceae isolated from marine aquaculture pond water, and emended descriptions of the genus Aquiflexum and Aquiflexum balticum. Int. J. Syst. Evol. Microbiol., 63, 2088-2094, 2013. 
  • Krishnamurthi, S.; Spring, S.; Kumar, P.A.; Mayilraj, S.; Klenk, H.P. and Suresh, K.Desulfotomaculum defluvii sp nov., a sulfate-reducing bacterium isolated from the subsurface environment of a landfill. Int. J. Syst. Evol. Microbiol., 63, 2290-2295, 2013.
  •  Chandna, P; Mayilraj, S; Kuhad, RCBacillus paraflexus sp nov., isolated from compost. Int. J. Syst. Evol. Microbiol., 63, 4735-4743, 2013. 
  • Singh, A.K.; Garg, N.; Sangwan, N.; Negi, V.; Kumar, R.; Vikram, S. and Lal, R.Pontibacter ramchanderi sp nov., isolated from hexachlorocyclohexane-contaminated pond sediment. Int. J. Syst. Evol. Microbiol., 63, 2829-2834, 2013.
  •  Krishna, K.K.; Bhumika, V.; Thomas, M.; Kumar, P.A. and Srinivas, T.N.R.Oceanospirillum nioense sp nov., a marine bacterium isolated from sediment sample of Palk bay, India. Antonie Van Leeuwenhoek, 103, 1015-1021, 2013. 
  • Singh, N.K.; Raichand, R.; Kaur, I.; Kaur, C.; Pareek, S. and Mayilraj, S. Exiguobacterium himgiriensis sp nov a novel member of the genus Exiguobacterium, isolated from the Indian Himalayas. Antonie Van Leeuwenhoek, 103, 789-796, 2013. 
  • Rakshak, K.; Ravinder, K.; Nupur; Srinivas, T.N.R. and Kumar, P.A.Caldimonas meghalayensis sp nov., a novel thermophilic betaproteobacterium isolated from a hot spring of Meghalaya in northeast India. Antonie Van Leeuwenhoek, 104, 1217-1225, 2013.
  • Shalley, S.; Kumar, S.P.; Srinivas, T.N.R.; Suresh, K. and Kumar, P.A.Marinilabilia nitratireducens sp nov., a lipolytic bacterium of the family Marinilabiliaceae isolated from marine solar saltern. Antonie Van Leeuwenhoek, 103, 519-525, 2013.
  •  Nupur; Vaidya, B.; Tanuku, N.R.S. and Pinnaka, A.K.Albirhodobacter marinus gen. nov., sp nov., a member of the family Rhodobacteraceae isolated from sea shore water of Visakhapatnam, India. Antonie Van Leeuwenhoek, 103, 347-355, 2013. 
  • Gowthaman, U.; Rai, P.K.; Zeng, W.G.; Jackson, D.C. and Agrewala, J.N.Lipidated promiscuous peptide augments the expression of MHC-II molecules on dendritic cells and activates T cells. Indian J. Med. Res., 138, 744-748, 2013. 
  • (IF 2.061) Palaniappan, K.; Meier-Kolthoff, J.P.; Teshima, H.; Nolan, M.; Lapidus, A.; Tice, H.; Del Rio, T.G.; Cheng, J.F.; Han, C.; Tapia, R.; Goodwin, L.A.; Pitluck, S.; Liolios, K.; Mavromatis, K.; Pagani, I.; Ivanova, N.; Mikhailova, N.; Pati, A.; Chen, A.; Rohde, M.; Mayilraj, S.; Spring, S.; Detter, J.C.; Goker, M.; Bristow, J.; Eisen, J.A.; Markowitz, V.; Hugenholtz, P.; Kyrpides, N.C.; Klenk, H.P. and Woyke, T.Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio. Stand. Genomic Sci., 9, 57-70, 2013. 
  • Singh, A.K. and Cameotra, S.S.Rhamnolipids Production by Multi-metal-Resistant and Plant-Growth-Promoting Rhizobacteria. Appl. Biochem. Biotechnol., 170, 1038-1056, 2013.
  •  Nandanwar, H.S.; Vohra, R.M. and Hoondal, G.S.Enhanced stability of newly isolated trimeric l-methionine-N-carbamoylase from Brevibacillus reuszeri HSN1 by covalent immobilization. Biotechnol. Appl. Biochem., 60, 305-315, 2013. 
  • Singh, N.; Pemmaraju, S.C.; Pruthi, P.A.; Cameotra, S.S. and Pruthi, V.Candida Biofilm Disrupting Ability of Di-rhamnolipid (RL-2) Produced from Pseudomonas aeruginosa DSVP20. Appl. Biochem. Biotechnol., 169, 2374-2391, 2013. 
  • Sachdev, D.P. and Cameotra, S.S.Biosurfactants in agriculture. Appl. Microbiol. Biotechnol., 97, 1005-1016, 2013.
  •  Biswas, D.; Datt, M.; Aggarwal, M. and Mondal, A.K.Molecular cloning, characterization, and engineering of xylitol dehydrogenase from Debaryomyces hansenii. Appl. Microbiol. Biotechnol., 97, 1613-1623, 2013. 
  • Nandanwar, H.S.; Vohra, R.M. and Hoondal, G.S.Trimeric L-N-carbamoylase from newly isolated Brevibacillus reuszeri HSN1: A potential biocatalyst for production of L-alpha-amino acids. Biotechnol. Appl. Biochem., 60, 219-230, 2013. 
  • Thakur, A. and Bachhawat, A.K.Mutations in the N-terminal region of the Schizosaccharomyces pombe glutathione transporter pgt1+allows functional expression in Saccharomyces cerevisiae. Yeast, 30, 45-54, 2013. 
  • Roy, S.K.; Kumari, N.; Pahwa, S.; Agrahari, U.C.; Bhutani, K.K.; Jachak, S.M. and Nandanwar, H.NorA efflux pump inhibitory activity of coumarins from Mesua ferrea. Fitoterapia, 90, 140-150, 2013. 
  • Arora, P.K.Staphylococcus lipolyticus sp nov., a new cold-adapted lipase producing marine species. Ann. Microbiol., 63, 913-922, 2013. 
  • Prakash, D.; Gabani, P.; Chandel, A.K.; Ronen, Z. and Singh, O.V.Bioremediation: a genuine technology to remediate radionuclides from the environment. Microb. Biotechnol.,6, 349-360, 2013.
  •  Venugopalan, P. and Kishore, R.Unusual Folding Propensity of an Unsubstituted ,-Hybrid Model Peptide: Importance of the CHO Intramolecular Hydrogen Bond. Chem.-Eur. J., 19, 9908-9915, 2013.
  •  Nandanwar, H.S.; Prajapati, R. and Hoondal, G.S.(D)-p-Hydroxyphenylglycine production by thermostable D-hydantoinase from Brevibacillus parabrevis-PHG1. Biocatal. Biotransform., 31, 22-32, 2013.
  •  Ratakonda, S.; Anand, A.; Dikshit, K.; Stark, B.C. and Howard, A.J.Crystallographic structure determination of B10 mutants of Vitreoscilla hemoglobin: role of Tyr29 (B10) in the structure of the ligand-binding site. Acta Crystallogr. F-Struct. Biol. Cryst. Commun., 69, 215-222, 2013. 
  • Tyagi, A.; Kapoor, P.; Kumar, R.; Chaudhary, K.; Gautam, A. and Raghava, G.P.S.In Silico Models for Designing and Discovering Novel Anticancer Peptides Sci. Rep., 3, 2984, 2013.
  •  Sharma, A.; Kapoor, P.; Gautam, A.; Chaudhary, K.; Kumar, R.; Chauhan, J.S.; Tyagi, A. and Raghava, G.P.S.Computational approach for designing tumor homing peptides. Sci. Rep., 3, 1607, 2013. 
  • Kumar, R.; Chaudhary, K.; Gupta, S.; Singh, H.; Kumar, S.; Gautam, A.; Kapoor, P. and Raghava, G.P.S.CancerDR: Cancer Drug Resistance Database. Sci. Rep., 3, 1445, 2013. 
  • Roy, A.; Mahata, D.; Paul, D.; Korpole, S.; Franco, O.L. and Mandal, S.M.Purification, biochemical characterization and self-assembled structure of a fengycin-like an fungal peptide from Bacillus thuringiensis strain SM1. Front. Microbiol., 4, 332, 2013. 
  • Bhartiya, D.; Pal, K.; Ghosh, S.; Kapoor, S.; Jalali, S.; Panwar, B.; Jain, S.; Sati, S.; Sengupta, S.; Sachidanandan, C.; Raghava, G.P.S.; Sivasubbu, S. and Scaria, V.lncRNome: a comprehensive knowledgebase of human long noncoding RNAs. Database, bat034, 2013. 
  • Srinivasan, V.B.; Mondal, A.; Venkataramaiah, M.; Chauhan, N.K. and Rajamohan, G.Role of oxyR(KP), a novel LysR-family transcriptional regulator, in antimicrobial resistance and virulence in Klebsiella pneumoniae. Microbiology-(UK), 159, 1301-1314, 2013 

2012

  • Dutta, R.K.; Kathania, M.; Raje, M. and Majumdar, S.IL-6 inhibits IFN-n induced autophagy in Mycobacterium tuberculosis H37Rv infected macrophages. Int. J. Biochem. Cell. Biol., 44, 942-954, 2012. 
  • Khan, M.A.; Gahlot, S. and Majumdar, S.Oxidative stress induced by curcumin promotes the death of Cutaneous T cell Iymphoma (HuT-78) by disrupting the function of several molecular targets. Molecular Cancer Therapeutics, 11, 1873-1883, 2012. Bhat, S.A.; Singh, N.; Trivedi, A.; Kansal, P.; Gupta, P. and Kumar, A.The mechanism of redox sensing in Mycobacterium tuberculosis. Free Radic Biol Med. 5, 1625-1641, 2012.
  • Trivedi, A.; Singh, N.; Bhat, S.A.; Gupta, P. and Kumar AshwaniRedox biology of tuberculosis pathogenesis. Advances in Microbial Physiology. 60, 263-324, 2012.
  • Farhana, A.; Saini, V.; Kumar, A.;  Lancaster, J. and Steyn, A.J.Environmental heme-based sensor proteins: Implications for understanding bacterial pathogenesis. Antioxidants & Redox Signaling. 17, 1232-1245, 2012.  Aithal, A.; Sharma,  A.; Joshi, S.; Raghava, G.P.S. and  Varshney, G.C.PolysacDB: a database of microbial polysaccharide antigens and their antibodies. PLoS One., 7 :e34613, 2012  Sekhon, K. K.; Khanna, S. and Cameotra, S.S.Biosurfactant Production and Potential Correlation with Esterase Activity. J. Pet. Environ. Biotechnol. 3: 7, 2012
  • Khatri, N.; Khatri, I.; Subramanian, S. and Raychaudhuri. S.Ethanolamine utilization in Vibrio alginolyticus. Biol. Direct., 12;7:45, 2012. Srinivasan, V.B.; Vaidyanathan, V.; Mondal, A.; Venkataramaiah, M. and Rajamohan, G.Functional characterization of a novel  outer membrane porin kpno, regulated by PhoBR two-component system in klebsiella pneumoniae NTUH-K2044. PLoS One, 7, e41505, 2012 Singh, V.; Ekka, M.K. and Kumaran, S.Second monomer binding is the rate-limiting step in the formation of the dimeric PhoP-DNA complex. Biochemistry,  51, 1346-1356, 2012.
  • Anand, S.; Singh, V.; Singh, A.K.; Mittal, M.;  Datt M.; Subramani, B. and Kumaran, S.Equilibrium binding and kinetic characterization of putative tetracycline repressor family transcription regulator Fad35R from Mycobacterium tuberculosis. FEBS J. 279, 3214-3228, 2012.  Mahajan, S.; Dkhar, H.K.; Chandra, V.; Dave, S.; Nanduri, R.; Janmeja, A.K. and Agrewala, J.N. Gupta P.Mycobacterium tuberculosis modulates macrophage lipid-sensing nuclear receptors PPARγ and TR4 for survival. J Immunol. 188, 5593-5603, 2012.  Singh, P.K.; Chittpurna; Ashish; Sharma, V.; Patil, P.B. and Korpole, S. Identification, Purification and Characterization of Laterosporulin, a Novel Bacteriocin Produced by Brevibacillus sp. Strain GI-9. PLoS One, 7, e31498, 2012.
  • Sharma, V.; Singh, P.K.; Midha, S.; Ranjan, M.; Korpole, S. and Patil, P.B.Genome sequence of Brevibacillus laterosporus Strain GI-9.  J. Bacteriol. 194, 1279, 2012.
  • Midha, S.; Sharma, V.; Ranjan, M.; Pinnaka, A.K. and Patil, P.B.Genome sequence of Xanthomonas axonopodis pv. punicae Strain LMG 859.  J. Bacteriol. 194:2395, 2012.
  • Midha, S.; Sharma, V.; Ranjan, M.; Pinnaka, A.K. and Patil, P.B.Genome sequence of Xanthomonas citri pv. mangiferaeindicae Strain LMG 941. J. Bacteriol. 194: 3031, 2012.
  • Midha, S.;  Ranjan, M.; Sharma, V.; Kumari, A.; Singh, P.K.; Korpole, S. and Patil, P.B.  Genome Sequence of Pediococcus pentosaceus Strain IE-3. J. Bacteriol. 194:4468, 2012.
  • Gupta, S.; Goyal, R.; Nirwan, J.; Cameotra, S.S. and Tejoprakash, N.Biosequestration, transformation, and volatilization of mercury by Lysinibacillus fusiformis isolated from industrial effluent. J. Microbiol. Biotechnol. 22, 684-689, 2012.
  • Pemmaraju, S.C; Sharma, D; Singh, N; Panwar, R.; Cameotra,S.S.and Pruthi, S.Production of Microbial Surfactants from Oily Sludge-Contaminated Soil by Bacillus subtilis DSVP23. Appl. Biochem. Biotechnol. 167, 1119-1131, 2012.  Roy Choudhury, A.Sharma, N. and  Prasad, G.S.Deoiled jatropha seed cake is a useful nutrient for pullulan production. Microbial Cell Factories. 11:39, 2012.  Aithal, A.; Sharma,  A.; Joshi, S.; Raghava, G.P.S. and  Varshney, G.C.PolysacDB: a database of microbial polysaccharide antigens and their antibodies. PLoS One., 7 :e34613, 2012 Kumar,S.; Vikram,S. and Raghava, G.P.S.Genome Sequence of the Nitroaromatic Compound-Degrading Bacterium Burkholderia sp. Strain SJ98. J. Bacteriol., 194 , 12: 3286, 2012. Kumar, S.; Sheokand, N.; Mhadeshwar, M.A.; Raje, C.I. and Raje, M.Characterization of glyceraldehyde-3-phosphate dehydrogenase as a novel transferrin receptor. Int. J. Biochem. Cell. Biol., 44, 189-199, 2012. 
  • Panwar, B. and Raghava, G.P.S.Predicting sub-cellular localization of tRNA synthetases from their primary structures. Amino Acids., 42, 1703-1713, 2012 
  • Manickam, N.;  Pareek, S.; Kaur, I.; Singh, N.K. and Mayilraj, S.Nitratireductor lucknowense sp. nov., a novel bacterium isolated from a pesticide contaminated soil. Antonie van Leeuwenhoek, 101, 125-131, 2012
  • Bala, M.; Kaur, C.; Kaur, I.; Khan, F. and Mayilraj, S.Kocuria sediminis sp. nov., isolated from a marine sediment sample. Antonie van Leeuwenhoek. 101, 469-478, 2012.
  • Gursonika Binepal; Rajiv Kumar Ranjan and Kammara RajagopalExpression of synthetic human tumor necrosis factor is toxic to Escherichia coli. Gene., 493, 155-160, 2012
  • Kumar, A.; Cameotra, S.S. and Gupta, S. Screening and characterization of potential cadmium biosorbent Alcaligenes strain from industrial effluent. J. Basic Microbiol., 52, 160-166, 2012.  Arora, P.K. and Jain, R.K.Biotransformation of 4-chloro-2-nitrophenol into 5-chloro-2-methylbenzoxazole by a marine Bacillus sp. strain MW-1. Biodegradation. 23, 325-331, 2012. Gupta, S.; Goyal, R.; Nirwan, J.; Cameotra, S.S. and Nagaraja, T.Biosequestration, Transformation, and Volatilization of Mercury by Lysinibacillus fusiformis Isolated from Industrial Effluent. J. Microbiol. Biotechnol. 22, 684-689, 2012.  Chodisetti, S.B.; Rai, P.K.; Gowthaman, U.; Pahari, S. and  Agrewala, J.N.Potential T cell epitopes of Mycobacterium tuberculosis that can instigate molecular mimicry against host: implications in autoimmune pathogenesis. BMC Immunol., 13 (1):13, 2012.
  • Singh, S.; Ashish and Dikshit, K. L.Pro(42) and Val(45) of staphylokinase modulate intermolecular interactions of His(43)-Tyr(44) pair and specificity of staphylokinase-plasmin activator complex.  FEBS Lett. , 586, 653-658, 2012. Singh H., Chauhan, J.S., Gromiha, M. M., Consortium, OSDD Raghava, G. P. S., ccPDB: compilation and creation of data sets from Protein Data Bank. Nucleic Acids Res, 40, D486-489, 2012.  Kumar, S.; Sheokand, N.; Mhadeshwar, M.A.; Raje, C.I. and Raje, M.Characterization of glyceraldehyde-3-phosphate dehydrogenase as a novel transferrin receptor. Int. J. Biochem. Cell. 
  • Biol. 44, 189-199, 2012 Gursonika Binepal; Rajiv Kumar Ranjan and Kammara RajagopalExpression of synthetic human tumor necrosis factor is toxic to Escherichia coli. Gene. 493, 155-160, 2012  Bala, M.; Kaur, C.; Kaur, I.; Khan, F. and Mayilraj, S.Kocuria sediminis sp. nov., isolated from a marine sediment sample. Antonie van Leeuwenhoek . 101, 469-478, 2012.  Manickam, N.;  Pareek, S.; Kaur, I.; Singh, N.K.and Mayilraj, S.Nitratireductor lucknowense sp. nov., a novel bacterium isolated from a pesticide contaminated soil. Antonie van Leeuwenhoek. 101, 125-131, 2012.  Gosal, S. K.;  Saroa, G.S.; Vikal, Y.;  Cameotra, S.S.;  Pathania, N. and Bhanot, A.Isolation and molecular characterisation of diazotrophic growth-promoting bacteria from wheat rhizospheric soils of Punjab. Soil Research, 49: 725 - 732, 2012   Dave,S.; Kaur, N.J.; Nanduri, R.; Dkhar, H.K.; Kumar, A. and Gupta, P.Inhibition of Adipogenesis and Induction of 
  • Apoptosis and Lipolysis by Stem Bromelain in 3T3-L1 Adipocytes. PLoS one, 7, e30831, 2012. Ghosh, S.; Patil, S.; Ahire, M.; Kitture, R.; Kale, S.; Pardesi, K.; Cameotra, S.S.; Bellare, J.; Dhavale, D.D.; Jabgunde, A. and Chopade, B.A.Synthesis of silver nanoparticles using Dioscorea bulbifera tuber extract and evaluation of its synergistic potential in combination with antimicrobial agents. Int. J. Nanomedicine. 7 483 – 496, 2012. Joshi, K.K.; Nanda, J.S.; Kumar, P. and Sahni, G.Substrate kringle-mediated catalysis by the streptokinase-plasmin activator complex: Critical contribution of kringle-4 revealed by the mutagenesis approaches. Biochim Biophys Acta., 1824, 326-333, 2012.

2011

  • Kumar, A.; Farhana, A.; Guidry, L.; Saini, V.; Hondalus, M. and Steyn, A.J.C.Redox homeostasis in mycobateria: the key to tuberculosis control? Expert Reviewsin molecular Medicine. 13, e39, 2011.  Agarwal S, Mishra NK, Singh H, Raghava GP.(2011).Development of an HPLC method for determination of pentachloronitrobenzene, hexachlorobenzene and their possible metabolites. PLoS One. 2011;6(9).  Frese, S.A.; Benson, A.K.; Tannock, G.W.; Loach, D.M.; Kim, J.; Zhang, M.; Oh, P.L.; Heng, N.C.K.; Patil, P.B.; Juge, N.; MacKenzie, D.A.; Pearson, B.M.; Lapidus, A.; Dalin, E.; Tice, H.; Goltsman, E.; Land, M.; Hauser, L.; Ivanova, N.; Kyrpides, N.C. and Walter, J. The evolution of host specialization in the vertebrate gut symbiont lactobacillus reuteri. PLoS Genet, 7:  e1001314, 2011.
  • Potnis, N.; Krasileva, K.;  Chow, V.;  Almeida, N.F.;Patil, P.B.; Ryan, R.P.; Sharlach, M.;  Behlau, F.; Dow, J.M.; Momol, T.; White, F.F.;  Preston, J.F.; Vinatzer, B.A.; Koebnik, R.; Setubal, J.C.; Norman, D.J.; Staskawicz, B. and Jones, J.B.Comparative Genomics Reveals Diversity among Xanthomonads Infecting Tomato and Pepper. BMC Genomics, 12:146, 2011.
  • Bogdanove, A. J.; Koebnik, R.; Lu, H.;Furutani, A.; Angiuoli, S. V.; Patil, P. B.; Van Sluys, M. A.; Ryan, R. P.; Meyer, D. F.; Han, S. W. et al.Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. J. Bacteriol., 193, 5450 -5464, 2011. Siddiqui, K.F.; Amir, M. and Agrewala, J.N. Understanding the biology of 16 kDa antigen of Mycobacterium tuberculosis: scope in diagnosis, vaccine design and therapy. Critical Reviews in Microbiology, 37, 349-357, 2011.
  • Gowthaman, U.; Singh, V.; Zeng, W.; Jain, S.;, Siddiqui, K.F.; Gurram, R.; Sathibabu, C.; Parihar, P.; Gupta, P.; Gupta, U.D.; Jackson, D.C. and Agrewala, J.N. Promiscuous peptide of 16 kDa antigen linked to Pam2Cys protects against M. tuberculosis by evoking enduring memory T cells response. J. Infect. Dis., 204, 1328-1338, 2011  
  • Boro, R.;  Kaushal, J.;  Nangiar, Y.; Wangoo, N.  and Suri, C.R.Gold nanoparticles catalyzed chemiluminescence immunoassay for detection of herbicide 2,4-dichlorophenoxyacetic acid. Analyst, 136, 2125-2130, 2011. 
  • Dahiya, M.; Singh, S.; Rajamohan, G.; Sethi, D.; Ashish and Dikshit, K.L.Intermolecular interactions in staphylokinase-plasmin(ogen) bimolecular complex: Function of His43 and Tyr44. FEBS Lett., 585, 1814-1820, 2011. 
  • Chakraborti, P.K.; Matange, N.; Nandicoori, V.K.; Singh, Y.; Tyagi, J.S. and Visweswariah, S.S.Signalling mechanisms in Mycobacteria. Tuberculosis, 91, 432-440, 2011. 
  • Kanudia, P.; Mittal, M.; Kumaran, S. and Chakraborti, P.K.Amino-terminal extension present in the Methionine aminopeptidase type 1c of Mycobacterium tuberculosis is indispensible for its activity. BMC Biochemistry, 5:12:35, 2011.  
  • Singh, M.; Kumar, P. and Karthikeyan, S.Structural basis for pH dependent monomer-dimer transition of 3,4-dihydroxy 2-butanone-4-phosphate synthase domain from M. tuberculosis. J. Structural Biology, 174, 374-384, 2011. 
  • Dongre, M.; Khatri, N. Dureja, C. and Raychaudhuri, S.Alanine-scanning mutagenesis of selected residues in the N-terminal region alters the functionality of LuxO: lessons from a natural variant LuxOPL91. J. Med. Microbiol., 60,856-860, 2011. 
  • Dar, H.H.;  Prasad, D.; Varshney, G.C.  and Chakraborti, P.K.Secretory Nucleoside Diphosphate Kinase from both the Intra- and Extra- cellular Pathogenic Bacteria are functionally indistinguishable. Microbiology, 157, 3024-3035, 2011. 
  • Noolvi, M. N.;  Patel, H.M.; Singh, N.;  Gadad, A.K. and Cameotra, S.S. Synthesis and Anticancer Evaluation of Novel 2-Cyclopropylimidazo[2,1-b][1,3,4]-thiadiazole Derivatives. European Journal of Medicinal Chemistry, 46, 4411-4418, 2011. 
  • Dave,S.; Kaur, N.J.; Nanduri, R.; Dkhar, H.K.; Kumar, A. and Gupta, P.Inhibition of Adipogenesis and Induction of Apoptosis and Lipolysis by Stem Bromelain in 3T3-L1 Adipocytes. PLoS one, 7 e30831, 2012. 
  • Mayilraj, S.; Ruckmani, A.; Kaur, C.;  Kaur, I. and Peter-Klenk, H.Cohnella ferri sp. nov. a novel member of the genus Cohnella  isolated from haematite ore. Current Microbiol., 62, 1704-1709, 2011. 
  • Chittpurna; Kumar, P.K.; Verma, D.; Mayilraj, S. and Korpole, S.Micrococcus lactis sp. nov., isolated from a dairy industry waste treatment. Int. J. Syst. Evol. Microbiol., 61, 2832-2836, 2011. 
  • Ruckmani, A.; Kaur, I.; Schuman, P.; Klenk, H.P. and Mayilraj, S.Calidifontibacter indicus gen. nov., sp. nov., a novel actinobacterium belonging to family Dermacoccaceae isolated from Western Ghats region, India and emendation of the family Dermacoccaceae. Int. J. Syst. Evol. Microbiol., 61, 2419-2424, 2011.   Raichand, R.; Kaur, I.;  Singh, N.K. and Mayilraj, S.Pontibacter rhizosphera sp. nov., isolated from rhizosphere soil of an Indian medicinal plant Nerium indicum. Antonie van Leeuwenhoek. 100, 29-35, 2011. S. K. Gosal, G. S. Saroa, Y. Vikal, S. S. Cameotra, Neemisha Pathania and A. Bhanot.Isolation and molecular characterization of diazotrophic growth-promoting bacteria from wheat rhizospheric soils of Punjab. Soil Research, 2011 Phosphorylation of PhoP Protein Plays Direct Regulatory Role in Lipid Biosynthesis of Mycobacterium tuberculosis. J Biol Chem., 286, 45197-45208, 2011.   Selenite Stress Elicits Physiological Adaptations in Bacillus sp. (Strain  JS-2)2011. J. Microbiol. Biotechnol., 21, 1184–1192, 2011.Trifluoroethanol Stabilizes the Molten Globule State and Induces Non-Amyloidic Turbidity in Stem Bromelain near its Isoelectric Point. Int. J. Biol. Macromol., 49, 536-542, 2011.Fungus-mediated biological synthesis of gold nanoparticles: potential in detection of liver cancer. Int. J. Nanomedicine, 6, 2305-2319, 2011. Selenite Stress Elicits Physiological Adaptations in Bacillus sp. (Strain JS-2)2011. J. Microbiol. Biotechnol., 21, 1184–1192, 2011. A novel role for bruton’s tyrosine kinase in hepatocyte growth factor mediated immunoregulation of dendritic cells. J. Biol. Chem., 286, 32054-32063, 2011.  Singhal, Eshu and Sen, PradipHepatocyte growth factor-induced c-Src-phosphatidylinositol 3-kinase-AKT-mammalian target of rapamycin pathway inhibits dendritic cell activation by blocking IkB kinase activity. Int. J. Biochem. Cell.  Biol., 43, 1134-1146, 2011.Arora, P.K. and  Jain, R.K.Pathway for Degradation of 2-Chloro-4-Nitrophenol in Arthrobacter sp. SJCon. Curr. 
  • Microbiol., 63, 568-573, 2011.Identification of Mannose Interacting Residues using Local Composition. Plos ONE, 6: e24039, 2011.Designing of Highly Effective Complementary and Mismatch siRNAs for Silencing a Gene. Plos ONE, 6: e23443, 2011.   Analysis and prediction of cancerlectins using evolutionary and domain information. BMC Research Notes,  4:237, 2011.    A Web Server for Predicting Inhibitors against Bacterial Target GlmU Protein. BMC Pharmacology, 11: 5, 2011.Pandey, J.; Heipieper, H.J.; Chauhan, A.; Arora, P.K.; Prakash, D.; Takeo, M.; and jain, R.K.Reductive dehalogenation mediated initiation of aerobic degradation of 2-chloro-4-nitrophenol (2C4NP) by Burkholderia sp. strain SJ98. Appl. Microbiol. Biotechnol., 92, 597-607, 2011.Description of Chryseomicrobium imtechense gen. nov., sp. nov., a new member of the family Planococcaceae. Int. J. Syst. Evol. Microbiol., 61, 1859-1864, 2011.  Monoclonal Antibodies Recognizing the Non-Tandem Repeat Regions of the Human Mucin MUC4 in Pancreatic Cancer. PLoS ONE, 6: e23344, 2011.Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. Journal of Bacteriology 193, 5450 -5464, 2011.Trifluoroethanol Stabilizes the Molten Globule State and Induces Non-Amyloidic Turbidity in Stem Bromelain near its Isoelectric Point. Int. J. Biol. Macromol., 49, 536-542, 2011. Visual insight into how low pH alone can induce actin severing ability in gelsolin under calcium free conditions. J. Biol. Chem., 286, 20387-20397, 2011.Dongre, M.; Singh, N.S.; Dureja, C.; Pedda, N.; Solanki, A.K.; Ashish, A.and Raychaudhuri, S.Evidence on how a conserved glycine in the hinge region of HapR regulates itsDNA binding ability: lessons from a natural variant. J. Biol. Chem., 286, 15043-15049, 2011.
  • Dahiya, M.; Singh, S.; Rajamohan, G.; Sethi, D.; Ashish and Dikshit, K.L.Intermolecular interactions in staphylokinase-plasmin(ogen) bimolecular complex: Function of His43 and Tyr44. FEBS Lett., 585, 1814-1820, 2011.
  • Sekhon, K.K.; Khanna, S. and Cameotra, S.S.Enhanced biosurfactant production through cloning of three genes and role of esterase in biosurfactant release. Microbial. Cell. Factories,10, 49, 2011.
  • Mishra N.K. and Raghava, G.P.S.Prediction of Specificity and Cross-Reactivity of Kinase Inhibitors. Letters in Drug Design & Discovery, 223-228, 2011.
  • Jain, S.; Chodisetti, S.B. and Agrewala J.N.CD40 signaling synergizes with TLR-2 in the BCR independent activation of resting B cell. PLoS ONE, 6: e20651, 2011.
  • Dhanjal, S.; Kaur, I.;  Korpole, S.;  Schuman, P.;Cameotra, S.S.;  Pukall, R.;  Klenk, H-P. and Mayilraj, S.Agrococcus carbonis sp. nov., a novel species of the genus Agrococcus isolated from coal mine soil sample. Int. J. Syst. Evol. Microbiol., 61:1253-1258, 2011. 
  • Srinivasan, VB, Rajamohan G, Pancholi P, Marcon M, Gebreyes WA. Molecular cloning and functional characterization of two novel membrane fusion proteins in conferring antimicrobial resistance in Acinetobacter baumannii. J. Antimicrob. Chemother., 66, 499-504, 2011.
  • Pinnanka, A.K.;  Srinivas, T. N. R.,  Prasad, A. R. and Shivaji, S. (2011) Identification of Fruity Aroma-Producing Compounds from Chryseobacterium sp. isolated from the Western Ghats, India. Online First™, 2011.
  • Bhawsar, S.D; Chopade, B.M. and Cameotra, S.S.Degradation of Diesel by Acinetobacter genospeciesIsolated From Rhizosphere of Wheat. Journal of advances in developmental research. Online 2011.Dongre, M.; Singh, N.S.; Dureja, C.; Pedda, N.; Solanki, A.K.; Ashish, A.and Raychaudhuri, S.Evidence on how a conserved glycine in the hinge region of HapR regulates itsDNA binding ability: lessons from a natural variant. J. Biol. Chem., 286, 15043-15049, 2011.Dahiya, M.; Singh, S.; Rajamohan, G.; Sethi, D.; Ashish and Dikshit, K.L.Intermolecular interactions in staphylokinase-plasmin(ogen) bimolecular complex: Function of His43 and Tyr44. FEBS Lett., 585, 1814-1820, 2011.
  • Sekhon, K.K.; Khanna, S. and Cameotra, S.S.Enhanced biosurfactant production through cloning of three genes and role of esterase in biosurfactant release. Microbial. Cell. Factories,10, 49, 2011.
  • Mishra N.K. and Raghava, G.P.S.Prediction of Specificity and Cross-Reactivity of Kinase Inhibitors. Letters in Drug Design & Discovery, 223-228, 2011.
  • Jain, S.; Chodisetti, S.B. and Agrewala J.N.CD40 signaling synergizes with TLR-2 in the BCR independent activation of resting B cell. PLoS ONE, 6: e20651, 2011.
  • Dhanjal, S.; Kaur, I.;  Korpole, S.;  Schuman, P.;Cameotra, S.S.;  Pukall, R.;  Klenk, H-P. and Mayilraj, S.Agrococcus carbonis sp. nov., a novel species of the genus Agrococcus isolated from coal mine soil sample. Int. J. Syst. Evol. Microbiol., 61:1253-1258, 2011. 
  • Srinivasan, VB, Rajamohan G, Pancholi P, Marcon M, Gebreyes WA. Molecular cloning and functional characterization of two novel membrane fusion proteins in conferring antimicrobial resistance in Acinetobacter baumannii. J. Antimicrob. Chemother., 66, 499-504, 2011.
  • Pinnanka, A.K.;  Srinivas, T. N. R.,  Prasad, A. R. and Shivaji, S. (2011) Identification of Fruity Aroma-Producing Compounds from Chryseobacterium sp. isolated from the Western Ghats, India. Online First™, 2011.
  • Bhawsar, S.D; Chopade, B.M. and Cameotra, S.S.Degradation of Diesel by Acinetobacter genospeciesIsolated From Rhizosphere of Wheat. Journal of advances in developmental research. Online 2011.Dahiya, M.; Singh, S.; Rajamohan, G.; Sethi, D.; Ashish and Dikshit, K.L.Intermolecular interactions in staphylokinase-plasmin(ogen) bimolecular complex: Function of His43 and Tyr44. FEBS Lett., 585, 1814-1820, 2011.Sekhon, K.K.; Khanna, S. and Cameotra, S.S.Enhanced biosurfactant production through cloning of three genes and role of esterase in biosurfactant release. Microbial. Cell. Factories,10, 49, 2011.
  • Mishra N.K. and Raghava, G.P.S.Prediction of Specificity and Cross-Reactivity of Kinase Inhibitors. Letters in Drug Design & Discovery, 223-228, 2011.
  • Jain, S.; Chodisetti, S.B. and Agrewala J.N.CD40 signaling synergizes with TLR-2 in the BCR independent activation of resting B cell. PLoS ONE, 6: e20651, 2011.
  • Dhanjal, S.; Kaur, I.;  Korpole, S.;  Schuman, P.;Cameotra, S.S.;  Pukall, R.;  Klenk, H-P. and Mayilraj, S.Agrococcus carbonis sp. nov., a novel species of the genus Agrococcus isolated from coal mine soil sample. Int. J. Syst. Evol. Microbiol., 61:1253-1258, 2011. 
  • Srinivasan, VB, Rajamohan G, Pancholi P, Marcon M, Gebreyes WA. Molecular cloning and functional characterization of two novel membrane fusion proteins in conferring antimicrobial resistance in Acinetobacter baumannii. J. Antimicrob. Chemother., 66, 499-504, 2011.
  • Pinnanka, A.K.;  Srinivas, T. N. R.,  Prasad, A. R. and Shivaji, S. (2011) Identification of Fruity Aroma-Producing Compounds from Chryseobacterium sp. isolated from the Western Ghats, India. Online First™, 2011.
  • Bhawsar, S.D; Chopade, B.M. and Cameotra, S.S.Degradation of Diesel by Acinetobacter genospeciesIsolated From Rhizosphere of Wheat. Journal of advances in developmental research. Online 2011.Sekhon, K.K.; Khanna, S. and Cameotra, S.S.Enhanced biosurfactant production through cloning of three genes and role of esterase in biosurfactant release. Microbial. Cell. Factories,10, 49, 2011.Mishra N.K. and Raghava, G.P.S.Prediction of Specificity and Cross-Reactivity of Kinase Inhibitors. Letters in Drug Design & Discovery, 223-228, 2011.
  • Jain, S.; Chodisetti, S.B. and Agrewala J.N.CD40 signaling synergizes with TLR-2 in the BCR independent activation of resting B cell. PLoS ONE, 6: e20651, 2011.
  • Dhanjal, S.; Kaur, I.;  Korpole, S.;  Schuman, P.;Cameotra, S.S.;  Pukall, R.;  Klenk, H-P. and Mayilraj, S.Agrococcus carbonis sp. nov., a novel species of the genus Agrococcus isolated from coal mine soil sample. Int. J. Syst. Evol. Microbiol., 61:1253-1258, 2011. 
  • Srinivasan, VB, Rajamohan G, Pancholi P, Marcon M, Gebreyes WA. Molecular cloning and functional characterization of two novel membrane fusion proteins in conferring antimicrobial resistance in Acinetobacter baumannii. J. Antimicrob. Chemother., 66, 499-504, 2011.
  • Pinnanka, A.K.;  Srinivas, T. N. R.,  Prasad, A. R. and Shivaji, S. (2011) Identification of Fruity Aroma-Producing Compounds from Chryseobacterium sp. isolated from the Western Ghats, India. Online First™, 2011.
  • Bhawsar, S.D; Chopade, B.M. and Cameotra, S.S.Degradation of Diesel by Acinetobacter genospeciesIsolated From Rhizosphere of Wheat. Journal of advances in developmental research. Online 2011.Mishra N.K. and Raghava, G.P.S.Prediction of Specificity and Cross-Reactivity of Kinase Inhibitors. Letters in Drug Design & Discovery, 223-228, 2011.Jain, S.; Chodisetti, S.B. and Agrewala J.N.CD40 signaling synergizes with TLR-2 in the BCR independent activation of resting B cell. PLoS ONE, 6: e20651, 2011.
  • Dhanjal, S.; Kaur, I.;  Korpole, S.;  Schuman, P.;Cameotra, S.S.;  Pukall, R.;  Klenk, H-P. and Mayilraj, S.Agrococcus carbonis sp. nov., a novel species of the genus Agrococcus isolated from coal mine soil sample. Int. J. Syst. Evol. Microbiol., 61:1253-1258, 2011. 
  • Srinivasan, VB, Rajamohan G, Pancholi P, Marcon M, Gebreyes WA. Molecular cloning and functional characterization of two novel membrane fusion proteins in conferring antimicrobial resistance in Acinetobacter baumannii. J. Antimicrob. Chemother., 66, 499-504, 2011.
  • Pinnanka, A.K.;  Srinivas, T. N. R.,  Prasad, A. R. and Shivaji, S. (2011) Identification of Fruity Aroma-Producing Compounds from Chryseobacterium sp. isolated from the Western Ghats, India. Online First™, 2011.
  • Bhawsar, S.D; Chopade, B.M. and Cameotra, S.S.Degradation of Diesel by Acinetobacter genospeciesIsolated From Rhizosphere of Wheat. Journal of advances in developmental research. Online 2011.Jain, S.; Chodisetti, S.B. and Agrewala J.N.CD40 signaling synergizes with TLR-2 in the BCR independent activation of resting B cell. PLoS ONE, 6: e20651, 2011.Dhanjal, S.; Kaur, I.;  Korpole, S.;  Schuman, P.;Cameotra, S.S.;  Pukall, R.;  Klenk, H-P. and Mayilraj, S.Agrococcus carbonis sp. nov., a novel species of the genus Agrococcus isolated from coal mine soil sample. Int. J. Syst. Evol. Microbiol., 61:1253-1258, 2011. 
  • Srinivasan, VB, Rajamohan G, Pancholi P, Marcon M, Gebreyes WA. Molecular cloning and functional characterization of two novel membrane fusion proteins in conferring antimicrobial resistance in Acinetobacter baumannii. J. Antimicrob. Chemother., 66, 499-504, 2011.
  • Pinnanka, A.K.;  Srinivas, T. N. R.,  Prasad, A. R. and Shivaji, S. (2011) Identification of Fruity Aroma-Producing Compounds from Chryseobacterium sp. isolated from the Western Ghats, India. Online First™, 2011.
  • Bhawsar, S.D; Chopade, B.M. and Cameotra, S.S.Degradation of Diesel by Acinetobacter genospeciesIsolated From Rhizosphere of Wheat. Journal of advances in developmental research. Online 2011.Dhanjal, S.; Kaur, I.;  Korpole, S.;  Schuman, P.;Cameotra, S.S.;  Pukall, R.;  Klenk, H-P. and Mayilraj, S.Agrococcus carbonis sp. nov., a novel species of the genus Agrococcus isolated from coal mine soil sample. Int. J. Syst. Evol. Microbiol., 61:1253-1258, 2011. Srinivasan, VB, Rajamohan G, Pancholi P, Marcon M, Gebreyes WA. Molecular cloning and functional characterization of two novel membrane fusion proteins in conferring antimicrobial resistance in Acinetobacter baumannii. J. Antimicrob. Chemother., 66, 499-504, 2011.
  • Pinnanka, A.K.;  Srinivas, T. N. R.,  Prasad, A. R. and Shivaji, S. (2011) Identification of Fruity Aroma-Producing Compounds from Chryseobacterium sp. isolated from the Western Ghats, India. Online First™, 2011.
  • Bhawsar, S.D; Chopade, B.M. and Cameotra, S.S.Degradation of Diesel by Acinetobacter genospeciesIsolated From Rhizosphere of Wheat. Journal of advances in developmental research. Online 2011.Srinivasan, VB, Rajamohan G, Pancholi P, Marcon M, Gebreyes WA. Molecular cloning and functional characterization of two novel membrane fusion proteins in conferring antimicrobial resistance in Acinetobacter baumannii. J. Antimicrob. Chemother., 66, 499-504, 2011.Pinnanka, A.K.;  Srinivas, T. N. R.,  Prasad, A. R. and Shivaji, S. (2011) Identification of Fruity Aroma-Producing Compounds from Chryseobacterium sp. isolated from the Western Ghats, India. Online First™, 2011.
  • Bhawsar, S.D; Chopade, B.M. and Cameotra, S.S.Degradation of Diesel by Acinetobacter genospeciesIsolated From Rhizosphere of Wheat. Journal of advances in developmental research. Online 2011.Pinnanka, A.K.;  Srinivas, T. N. R.,  Prasad, A. R. and Shivaji, S. (2011) Identification of Fruity Aroma-Producing Compounds from Chryseobacterium sp. isolated from the Western Ghats, India. Online First™, 2011.Bhawsar, S.D; Chopade, B.M. and Cameotra, S.S.Degradation of Diesel by Acinetobacter genospeciesIsolated From Rhizosphere of Wheat. Journal of advances in developmental research. Online 2011.Bhawsar, S.D; Chopade, B.M. and Cameotra, S.S.Degradation of Diesel by Acinetobacter genospeciesIsolated From Rhizosphere of Wheat. Journal of advances in developmental research. Online 2011.Identification through combinatorial random and rational mutagenesis of a substrate-interacting exosite in the gamma domain of streptokinase. J. Biol. Chem., 286, 6458-6469, 2011. Role of Swi6/HP1 self-association- mediated recruitment of Clr4/Suv39 in establishment and maintenance of heterochromatin in fission yeast. J. Biol. Chem., 286, 9308-9320, 2011. CCDB: a curated database of genes involved in cervix cancer. Nucleic Acids Res., 39: D975-979, 2011. Kathania, M.; Raje, C. I.;  Raje, M.; Dutta, R.K.; Majumdar, S.;Bfl-1/A1 acts as a negative regulator of autophagy in mycobacteria infected macrophages. Int. J. Biochem. Cell. Biol., 43, 573-585, 2011. SVM based prediction of RNA-binding proteins using binding residues and evolutionary information. J. Mol. Recognit., 24, 303-313, 2011. Biotransformation and biomonitoring of phenylurea herbicide diuron. Bioresource Technol., 102, 3119-3125, 2011. Cys-Gly Specific Di-peptidase Dug1p From S. cerevisiae Binds Promiscuously To Di, Tri, and Tetra Peptides: Peptide-Protein Interaction, Homology Modeling, and Activity Studies Reveal A Latent Promiscuity in Substrate Recognition. Biochimie, 93, 175-186, 2011. Yaniella fodinae sp. nov., a novel member of the genus Yaniella isolated fromcoal mine sample. Int. J. Syst. Evol. Microbiol., 61, 535-539, 2011. Kaur,I.;  Dhanjal, S.; Korpole, S.; Bora, T.C.  and Mayilraj, S. Description of a novel actinobacterium Microbacterium assamensis sp. nov., isolated from water sample collected from the river Brahmaputra, Assam, India. Curr. Microbiol., 62, 1039-1043, 2011. Lactose enhanced cellulase production by Microbacterium sp. Isolated from fecal matter of Zebra (Equuf zebra). Curr. Microbiol., 62, 1050-1055, 2011. Description of a novel actinobacterium Kocuria assamensis sp. nov., isolatedfrom water sample collected from the river Brahmaputra, Assam, India. Antonie van Leeuwenhoe., 99, 721-726, 2011. Design of single peptides for self-assembled conduction channels. Nanotechnol., 22:215606, 2011.The evolution of host specialization in the vertebrate gut symbiont lactobacillus reuteri. PLoS Genet, 7:  e1001314, 2011.Comparative Genomics Reveals Diversity among Xanthomonads Infecting Tomato and Pepper. BMC Genomics, 12:146, 2011Coadministration of IL-1+IL-6+TNF-α with Mycobacterium tuberculosis infected macrophages vaccine induces better protective T cell memory than BCG. PLoS ONE, 6:e16097, 2011.Makkar,R.S.; Cameotra, S.S. and Banat, I.M.Advances in utilization of renewable substrates for biosurfactant production. AMB Express, 1: 5, 2011.Pullulan production by an osmotolerant Aureobasidium pullulans RBF-4A3 isolated from flowers of Caesulia axillaris. Carbohydrate Polymers, 83,1547-1552, 2011.Crystal structure analysis of icosahedral lumazine synthase from Salmonella typhimurium, an antibacterial drug target. Acta. Cryst., D67, 131–139, 2011Environmental Applications of Biosurfactants: Recent Advances. Int. J. Mol. Sci., 12, 633-654, 2011N-Terminal sequencing by mass spectrometry through specific fluorescamine labeling of α-amino groups before tryptic digestion. Anal. Biochem., 408, 263-268, 2011. Goyal R, Das AK, Singh R, Singh PK, Korpole S and Sarkar D.Dhanjal, S. and  Cameotra, S.S.Dave, S.;  Mahajan, S.; Chandra, V. and Gupta, P.Chauhan, A.;Zubair, S.; Tufail, S.; Sherwani, A.; Sajid, M.; Suri, C. R.; Azam, A. and Owais, M.Dhanjal, S. and  Cameotra, S.S.Singhal, E.; Kumar, P. and Sen, P.Bhat, A.; Mondal, H.; Chauhan, J.; Raghava, G.P.S.; Methi, A. and Rao, A.  ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins. Nucleic Acid Res. Online : http://nar.oxfordjournals.org/cgi/reprint/gkr911? 
  • Tyagi, A.; Ahmed, F.; Thakur, N.; Sharma, A.; Raghava, G. P. S. and Kumar, M.  HIVsirDB: A database of HIV inhibiting siRNAs. PLoS ONE, 6: e25917, 2011.  Agarwal, S.; Mishra, N.K.; Singh, H. and Raghava, G. P. S. Ahmed, F. and Raghava, G. P. S. Kumar, R.; Panwar, B.; Chauhan, J.S. and Raghava, G. P. S. Singla, D.; Anurag, M.; Dash, D. and Raghava, G. P. S. 
  • Arora, P.K.; Chauhan, A.; Pant, B.; Korpole, S.; Mayilraj, S. and Jain, R.K.; Jain, M.; Venkatraman, G.; Moniaux, N.; Kaur, S.; Kumar, S.; Chakraborty, S.; Varshney, G.C. and  Batra, S.K. Bogdanove, A. J.; Koebnik, R.; Lu, H.;Furutani, A.; Angiuoli, S. V.; Patil, P. B.; Van Sluys, M. A.; Ryan, R. P.; Meyer, D. F.; Han, S. W. et al.Dave, S.;  Mahajan, S.; Chandra, V. and Gupta, P.Garg, R.; Peddada, N.; Sagar, A.; Nihalani, D. and Ashish Ishwinder Kaur., Das, A. P., Acharya, M., Klenk, H- P., Sree, A. and Mayilraj, S*.Planococcus plakortidis sp. nov., isolated from marine sponge Plakortis simplex (Schulze) collected in the Bay of Bengal. Int J Syst Evol Microbiol:IJS/2010/029967Natesan Manickam., Siddhika Pareek., Ishwinder Kaur., Nitin Kumar Singh and Shanmugam Mayilraj*Nitratireductor lucknowense sp. nov., a novel bacterium isolated from a pesticide contaminated soil. Antonie van Leeuwenhoek;ANTO-S-11-00039 Yadav, S.; Aneja, R.; Kumar, P.; Datt, M.; Sinha, S. and Sahni, G. Jagmohan SinghAgarwal, S.M.; Raghav, D.; Singh, H. and  Raghava G.P.S.
  • Kumar, M.; Gromiha, M.M. and Raghava, G.P.S..Sharma, P. and Suri, C.R.Kaur, H.; Datt, M.;  Krishna, M. E.; Mittal, M.; Singh, A.K. and  Kumaran, S. Dhanjal,S.; Ruckmani,A.; Cameotra,S.S.; Pukall,R.; Klenk,H-P and Mayilraj, S.
  • Sadhu, S.; Saha, P.;  Mayilraj, S. and Maiti, T.K.Kaur, C.; Kaur, I.; Raichand,R.; Bora, T.C. and Mayilraj, S.Yew1, S.Y.; Shekhawa, G.; Wangoo, N.; Mhaisalkar, S.; Suri, C.R.; Dravid V.P.and Lam1, Y.M.  Frese, S.A.; Benson, A.K.; Tannock, G.W.; Loach, D.M.; Kim, J.; Zhang, M.; Oh, P.L.; Heng, N.C.K.; Patil, P.B.; Juge, N.; MacKenzie, D.A.; Pearson, B.M.; Lapidus, A.; Dalin, E.; Tice, H.; Goltsman, E.; Land, M.; Hauser, L.; Ivanova, N.; Kyrpides, N.C. and Walter, J.  Potnis, N.; Krasileva, K.;  Chow, V.;  Almeida, N.F.;Patil, P.B.; Ryan, R.P.; Sharlach, M.;  Behlau, F.; Dow, J.M.; Momol, T.; White, F.F.;  Preston, J.F.; Vinatzer, B.A.; Koebnik, R.; Setubal, J.C.; Norman, D.J.; Staskawicz, B. and Jones, J.B. Singh, V.; Jain, S.; Gowthaman, U.; Parihar, P.; Gupta, P.; Gupta, U.D. and Agrewala, J.N. 
  • Choudhury, A.R.; Saluja, P. and Prasad, G.S. Kumar, P.; Singh, M. and Karthikeyan, S. Magdalena Płociniczak, P.; Płaza, G.A.; Piotrowska-Seget, Z. and Cameotra, S.S. Dhaunta, N.; Fatima, U. and  Guptasarma, P.

2010

  • Sharma,P.; Gandhi, S.; Chopra, A. and Suri, C.R. Fluoroimmunoassay based on suppression of fluorescence self-quenching for ultra sensitive detection of herbicide diuron. Anal. Chim. Acta., 676, 87-92, 2010  Kumar, N.; Venugopalan, P. and Kishore, R.Crystallographically observed folded topology of an unsubstituted gamma-aminobutyric acid incorporated in a model peptide: importance of a C—H….O interaction. Biopolymers, 93, 927-931, 2010. Kumar, N. and Kishore, R.Determination of an unusual secondary structural element in the immunostimulating tetrapeptide rigin in aqueous environments: insights via MD simulations, (1)H NMR and CD spectroscopic studies. J. Pept. Sci., 16, 456-464, 2010. Pashov, A.D.;  Monzavi-Karbassi, B. ;Raghava, G.P.S.; and Kieber-Emmons, T. Bridging Innate and Adaptive Anti-Tumor Immunity Targeting Glycans. J. Biomed. Biotechnol., 354068, 2010. Kukreti, H.;  Mittal, V.; Chaudhary, A.; Rautela, R.S.; Kumar, M.; Chauhan, S.; Bhat, S.; Chhabra, M.; Bhattacharya, D.; Pasha, S.T.; Kumar, D.; Gomber, S.; Lal, S. and  Rai, A. Continued persistence of a single genotype of dengue virus type-3 (DENV-3) in Delhi, India since its re-emergence over the last decade. J. Microbiol. Immunol. Infect., 43, 53-61, 2010.
  • Rajamohan, G.; Srinivasan, V.B. and Gebreyes, W.A. Molecular and functional characterization of a novel efflux pump AmvA, in mediating antimicrobial and disinfectant resistance in Acinetobacter baumannii. J. Antimicrob. Chemother., 65, 1919-1925, 2010.
  • Rajamohan, G.; Srinivasan, V.B. and Gebreyes, W.A. Novel role of Acinetobacter baumannii RND efflux transporters in mediating decreased susceptibility to biocides. J. Antimicrob. Chemother., 65, 228-232., 2010.
  • Daniel, H.M. and Prasad, G.S.The role of culture collections as an interface between provides and users: the examples of yeasts. Resarch in Microbial., 161, 488-496, 2010.
  • Pinnanka, A.K.; Srinivas, T. N. R.; Pavankumar, P.; Madhu, S. and Shivaji, S.  Nitritalea halalkaliphila gen. nov., sp. nov., an alkaliphilic bacterium of the family ‘Cyclobacteriaceae’, phylum Bacteroidetes. Int. J. Sys. Evol. Microbiol., 60, 2320–2325, 2010.
  • Pinnanka, A.K.; Srinivas, T. N. R.; Madhu, S.; Manorama, R. and Shivaji, S. Indibacter alkaliphilus gen. nov., sp. nov., an alkaliphilic bacterium isolated from a haloalkaline lake. Int. J. Sys. Evol. Microbiol., 60, 721-726, 2010.Kumar, P.; Singh, M.; Gautam, R. and Karthikeyan, S.Potential anti-bacterial drug target: Structural characterization of 3,4-dihydroxy-2-butanone-4-phosphate synthase from Salmonella typhimurium LT2. Protein. , 78, 3292-3303, 2010.Daniel, H.M. and Prasad, G.S. The role of culture collections as interface between providers and users: the example of yeasts. Research in Microbiology 161, 488-496, 2010. Pathak, A.; Goyal, R.; Sinha, A.  and Sarkar, D.Domain structure of virulence-associated response regulator phop of Mycobacterium tuberculosis: role of the linker region on regulator-promoter interaction(S). J. Biol. Chem. 285, 34309-34318, 1010.Dar, H.H. and  Chakraborti, P.K.Intermolecular phosphotransfer is crucial for efficient catalytic activity of Nucleoside diphosphate kinase. Biochem. J., 430, 539-549, 2010.Ansari, H.R. and  Raghava, G.P.Identification of conformational B-cell Epitopes in an antigen from its primary sequence. Immunome Res., 6:6, 2010Panwar, B. and  Raghava, G.P.Prediction and classification of aminoacyl tRNA synthetases using PROSITE domains. BMC Genomics., 11:507, 2010.Fatima, U.; Sharma, S. and  Guptasarma, P.Structures of Differently Aggregated and Precipitated forms of gammaB Crystallin: An FTIR Spectroscopic and EM Study. Protein Pept. Lett.,   17, 1155-1162, 2010.Sharma, P.; Chopra, A.; Cameotra, S.S. and Suri, C.R.Efficient biotransformation of herbicide diuron by bacterial strain Micrococcus sp.PS-1. Biodegradation., 21, 979-987, 2010.Ranjan, R.K. and Kammara, Rajagopal Efficient ligation and cloning of DNA fragments with two base pair Overhangs. Anal. Biochem. 402, 91-92, 2010.Biswas, D.; Datt, M.;  Ganesan, K.; and Mondal, A.K.Cloning and characterization of thermotolerant xylitol dehydrogenases from yeast Pichia angusta. App. Microbiol. Biotechnol., 88, 1311-1120, 2010. Ruckmani, A. and Chakrabarti, T.Analysis of Bacterial Community Composition of a Spring Water from the Western Ghats, India Using Culture Dependent and Molecular Approaches. Curr. Microbiol., 62, 7-15, 2010.
  • Krishnamurthi, S.; Ruckmani, A.; Pukall, R. and Chakrabarti, T.Psychrobacillus gen. nov.andproposalforreclassificationof Bacillus insolitus Larkin &Stokes,1967, B. psychrotolerans Abd-El Rahmanetal.,2002and B. psychrodurans Abd-El Rahmanetal.,2002as Psychrobacillus insolitus comb. nov., Psychrobacillus psychrotolerans comb. nov.and Psychrobacillus psychrodurans comb. nov., Syst. Appl. Microbiol., 33, 367-373, 2010. Bajaj, A.; Pathak, A.; Mudiam, M.; Mayilraj, S. and Manickam, N. Isolation and characterization of a Pseudomonas sp. strain IITR01 capable of degrading α-endosulfan and endosulfan sulfate. J. App. Microbiol., 109, 2135-2143, 2010.Manickam, N.; Pathak, A.; Saini, H.; Mayilraj,S. and Rishi, S.Metabolic profiles and phylogenetic diversity of microbial communities from chlorinated pesticides contaminated sites of different geographical habitats of India. J.  App. Microbiol., 109, 1458-1468, 2010.Bhasin, S.; Cameotra, S.S. and. Modi, H.AActinomycetal diversity of western region of Madhya Pradesh. J. Adv. Developmental Res. 1, 132-138, 2010.Joshi, K.K. and Sahni, G.Molecular cloning, expression, purification and characterization of truncatedforms of human plasminogen in Pichia pastoris expression system. Process Biochem., 45, 1251-1260, 2010.Yadav,S. and  Sahni, G.Probing the primary structural determinants of streptokinase inter-domain linkers by site-specific substitution and deletion mutagenesis. Biochim Biophys Acta., 1804, 1730-1737, 2010.Mishra, N.K.; Agarwal, S. and Raghava, G.P.S.Prediction of cytochrome P450 isoform responsible for metabolizing a drug molecule. BMC Pharmacol.,10: 8, 2010.Chauhan, J.S.  Mishra, N.K. and Raghava, G.P.S.Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information. BMC Bioinformatics, 11: 301, 2010.LaButti, K.; Mayilraj, S.; Lapidus, A. et al.Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207T). Standards in Genomic Sciences, 3, 85-92, 2010. Pal, K.; Kumar, S.; Sharma, S.; Garg, S.K.; Mohammad, S.Alam; Xu, H.E.; Agrawal, P. and Swaminathan, K.Crystal structure of full length mycobacterium tuberculosis H37rv glycogen branching enzyme: insights of n-terminal β-Sandwich in substrate specificity and enzymatic activity. J. Biol. Chem., 285, 20897-20903, 2010.Wangoo, N.; Kaushal, J.; Bhasin, K.K. and Suri, C.R.Zeta potential based colorimetric immunoassay for the direct detection of diabetic marker HbA1c using gold nanoprobes. Chem. Comm., 46, 5755-5757, 2010.Singh, V.; Gowthaman. U.; Jain, S.; Parihar, P. Banaskar, S. Gupta, P. Gupta, U.D. and Agrewala, J.N. Co-administration of IL-7 and IL-15 with BCG amount enduring T cell memory response against M. tuberculosis. J. Infect. Dis., 202, 480-489, 2010.Gowthaman, U.; Sathibabu, C. and  Agrewala, J.N.T cell help to B cells in germinal centers: putting the jigsaw together. Int. Rev.  Immunol., 29, 403-420, 2010. Moon, L.; Pal, M.; Kasetti, Y.; Bharatam, P. and Jolly, R.S.Chiral Solvating Agents for Cyanohydrins and Carboxylic acids. J.Org. Chem., 75,  5487-5498, 2010.Dave, S.; Dkhar, H.K.; Singh, M.P.; Gupta, G., Chandra, V.; Mahajan, S. and Gupta P.Hexafluoroisopropanol induced helix-sheet transition of stem bromelain: Correlation to function. Int. J. Biochem. Cell. Biol., 42, 938-947, 2010.Luthra-Guptasarma, M.,and Guptasarma, P. Metal-catalyzed proteolysis, conformational antigenicity, photosensitized oxidation and electrical dysfunction explain the pathogenicity of protein aggregates. Medical Hypotheses, 75, 294-298, 2010.Ansari, H. R. and Raghava, G. P. S. Identification of NAD interacting residues in proteins.  BMC Bioinformatics, 11:160, 2010.Das, A.; Pathak, A.; Sinha, A.; Datt, M.; Singh, B.; Karthikeyan, S and Sarkar, D. A single amino acid substitution in the C terminus of PhoP determines DNA-binding specificity of the virulence-associated response regulator from Mycobacterium tuberculosis. J. Mol. Biol., 398, 647-656, 2010. Ghosh, A.; Khurana, M.; Chauhan, A.; Takeo, M.; Chakraborti, A.K. and Jain, R.K.Degradation of 4-Nitrophenol, 2-Chloro-4-nitrophenol, and 2,4-Dinitrophenol by Rhodococcus imtechensis Strain RKJ300. Environ. Sci. Technol., 44, 1069-1077, 2010.Gahlot, S.; Khan, M.A.; Rishi, L.; and Majumdar, S.Pentoxifylline augments TRAIL/Apo2L mediated apoptosis in Cutaneous T cell lymphoma (HuT-78 and MyLa) by modulating the expression of antiapoptotic proteins and death receptors. Biochem. Pharmacol., 77, 30-45, 2010.Kumar, A. and Bachhawat, A.KOXP1/YKL215c encodes an ATP-dependant 5-oxoprolinase in Saccharomyces cerevisiae: Functional Characterization, Domain structure and Identification of actin–like ATP-binding motifs in eukaryotic 5-oxoprolinases. FEMS Yeast Res., 10, 394-401, 2010. Anand, A.; Duk, B.T.; Singh, S.; Akbas, M.Y.; Webster, D.A.; Stark, B.C. and  Dikshit, K.L.Redox mediated interactions of Vitreoscilla hemoglobin [VHb] with OxyR : novel regulation of VHb biosynthesis under oxidative stress. Biochem. J., 426, 271-280, 2010.Kapur, M.; Bhatia, R.; Pandey, G.; Pandey, J.; Paul, D. and Jain R.K.A case study for assessment of microbial community dynamics in genetically modified Bt cotton crop fields. Curr. Microbiol., 61, 118-124, 2010. Mishra, N.K.; Agarwal, S. and Raghava, G.P.S.Prediction of cytochrome P450 isoform responsible for metabolizing a drug molecule. BMC Pharmacol.,10: 8, 2010. Chauhan, J.S.  Mishra, N.K. and Raghava, G.P.S.Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information. BMC Bioinformatics, 11: 301, 2010.LaButti, K.; Mayilraj, S.; Lapidus, A. et al.Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207T). Standards in Genomic Sciences, 3, 85-92, 2010.Abd, H.; Soni, P.V.; Sami, S.M.; Saeed, A.; Raychaudhuri, S. and Sandström, G.Interaction between Vibrio mimicus and Acanthamoeba castellanii. Environ. Microbiol. Reports, 2, 166-171, 2010.Dhanjal, S. and Cameotra, S.S.Aerobic biogenesis of selenium nanospheres by Bacillus cereus isolated from coalmine soil. Microbial Cell Factories, 9:52, 2010. Dave, S.; Mahajan, S.; Chandra, V.; Dkhar, H.K.; Sambhavi and Gupta, P.Specific molten globule conformation of stem bromelain at alkaline pH. Arch. Biochem. Biophy., 499, 26-31,
  •  2010. Haldar, A.K., Yadav, V.; Singhal, E.; Bisht, K.K.; Singh, A.; Bhaumik, S.; Basu, R.; Sen, Pradip* and Roy, SyamalLeishmania donovani isolates with antimony-resistant but not -sensitive phenotype inhibit sodium antimony Gluconate-Induced Dendritic cell activation. PLoS Pathogens, 6(5), 1-21, e1000907, 2010. Pratibha, J., Amandeep, K., Shenoy, B.D. and Bhat, D.J.Caliciopsis indica sp. nov. from India. Mycosphere, 1, 65–72, 2010. Dave, S.; Dkhar, H.K.; Singh, M.P.; Gupta, G.; Chandra, V.; Mahajan, S. And Gupta, P.Hexafluoroisopropanol-induced helix-sheet transition of stem bromelain: Correlation to function. Int. J. Biochem. Cell Biol., 42, 938-947, 2010. Meena, Netrapal; Kaur, Harsimran and Mondal, A. K.Interactions among HAMP repeats act as an osmosensing molecular switch in a group III hybrid histidine kinase. J. Biol Chem 2010, 285,12121–12132.Mathur, C.; Prakash, R.;  Ali, A.;  Kaur, J.; Cameotra, S.S.  and N. Prakash, T.Emulsification and Transesterification of Oil by a Soilborne Fungus, Syncephalastrum racemosum.. Defence Science Journal 2010, 60, 251-254.  Kapoor, D.; Singh, B.; Karthikeyan, S. and Guptasarma, P.A functional comparison of the TET aminopeptidases of P. furiosus and B. subtilis with a protein-engineered variant recombining the former's structure with the latter's active site. Enzyme Microb. Tech. 46, 1-8, 2010 Kumar, A. and Bachhawat, A.K.  Is a futile cycle, formed between two ATP-dependant γ-glutamyl cycle enzymes, γ-glutamyl cysteine synthetase and 5-oxoprolinase, the cause of cellular ATP depletion seen in nephrotic cystinosis? J. Biosciences ,35, 21-25, 2010. Garg, A., Tewari, R. and Raghava, G. P. S. KiDoQ: using docking based energy scores to develop ligand based model for predicting antibacterials.  BMC Bioinformatics, 11:125, 2010. Singla, D., Sharma, A., Kaur, J., Panwar, B. and Raghava, G. P. S. BIAdb: a curated database of benzylisoquinoline alkaloids. BMC Pharmacology, 10, 4, 2010. Lata, S., Mishra, N.K. and Raghava, G. P. S. AntiBP2: Improved version of antibacterial peptide prediction. BMC Bioinformatics, 11:S19, 2010. Mishra, N.K. and Raghava, G. P. S. Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information. BMC Bioinformatics, 11:S48, 2010. Garg, A., Tewari, R. and Raghava, G. P. S.Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of Mycobacterium tuberculosis. BMC Bioinformatics, 11:S53, 2010. Chaudhary N, Mahajan L, Madan T, Kumar A, Raghava, G. P. S., Katti SB, Haq W and Sarma PU.Prophylactic and Therapeutic Potential of Asp f1 Epitopes in Naiive and Sensitized BALB/c Mice. Immune Netw. 9, 179-91, 2010. Tripathi, R.; Singh, N.S.; Dureja, C.; Haldar, S.; Mondal, A.K. and Raychaudhuri, S.VopF, a type III effector protein from a non-O1, non-O139 V. cholerae strain demonstrates toxicity in a Saccharomyces cerevisiae model. J. Med. Microbiol., 59, 17-24, 2010.
  • Ashish; Solanki, A.K.; Boone, C.D. and Krueger, J.K.Global structure of HIV-1 neutralizing antibody IgG1 b12 is asymmetric. Biochem. Biophy.Res. Comm., 391, 947-951, 2010.
  • Hadi Abd; Valeru, S.P.; Sami, S.M.; Saeed, A. and Raychaudhuri, S.Interaction between Vibrio mimicus and Acanthamoeba castellanii (p ) Gunnar Sandström. Environ Microbiol Reports, (Online: DOI: 10.1111/j.1758-2229.2009.00129.x)  Ansari, H.R.; Flower, D.R. and Raghava, G.P.S.AntigenDB: an immunoinformatics database of pathogen antigens. Nucleic Acids Res., 38, D847-853, 2010.
  • Cameotra, S.S.Biosurfactant-enhanced bioremediation of hydrophobic pollutants. PAC, IUPAC 82(1): 97-116,  2010. Sengar, K.P.S.Building a Digital Institutional Repository Service (DIRS): IMTECH (CSIR) Initiative. Proceedings of the 3rd International Conference on Digital Libraries (ICDL)-2010. Vol.1, Page no. 600-605. Cameotra,S.S.Geographical Indications. CSIR NEWS Progress, Promise and Prospects,60, 5-6, 2010 Cameotra, Swaranjit SinghImportance and Role of a Service Culture Collection. WFCC July 2010. Sengar, K.P.S.Towards the Building of Digital Institutional Repositories of CSIR laboratories:an Overview, Proceedings of 27th Annual Convention of the Society forInformation Science (SIS-2010) & Conference on Open Access-Gateway to OpenInnovation, IICB-BI, Kolkata, 24-26 Nov., 2010. Shivaji,S. and Prasad, G.S. 2009. Antarctic Yeasts: Biodiversity and Potential Applications. In: Yeast Biotechnology: Diversity and Applications.Satyanarayana, T.; Kunze, Gotthard (Eds.). Springer Publishers, Amsterdam, The Netherlands. pp 3-18.

2009

  • Srinivasan, V.B.; Rajamohan, G.; Gebreyes, W.A.Role of AbeS, a novel efflux pump of  the SMR family of transporters, in resistance to antimicrobial agents in Acinetobacter baumannii. Antimicrob Agents Chemother. 53, 5312-5316, 2009.
  • Rajamohan, G.; Srinivasan, V.B. and Gebreyes, W.A. Biocide-tolerant multidrug-resistant  Acinetobacter baumannii clinical strains are associated with higher biofilm formation. J. Hosp. Infect., 73, 287-289, 2009.
  • Srinivasan, V.B.; Rajamohan, G.; Pancholi, P.; Stevenson, K.; Tadesse, D.; Patchanee, P.; Marcon, M. and Gebreyes, W.A. Genetic relatedness and molecular characterization of multidrug resistant Acinetobacter baumannii isolated in central Ohio, USA., Ann Clin Microbiol Antimicrob. 8:21,2009   Newcombe, D.; Dekas, A..; Mayilraj, S. and Venkateswaran, K.Bacillus canaveralius sp. nov., an alkali-tolerant bacterium isolated from a spacecraft assembly facility. Int J Syst Evol Microbiol; 59, 2015-2019, 2009. Fazlurrahman, F.; Batra, M.; Pandey, J.; Suri, C.R. and Jain R.K.Isolation and characterization of an atrazine degrading Rhodococcus sp. strain MB-P1 from contaminated soil. Lett. Appl. Microbial., 49, 721-729, 2009.  Chauhan, J.S.; Mishra, N.K. and Raghava, G.P.S.Identification of ATP binding residues of a protein from 
  • its primary sequence. BMC Bioinformatics.10, 434, 2009. Ahmed, F.; Ansari, H.R. and Raghava, G.P.S..Prediction of guide strand of microRNAs from its sequence and secondary structure. BMC Bioinformatics,10, 105, 2009. Gowthaman, U. and  Agrewala, J.N.In silico methods for predicting T-cell epitopes: Dr Jekyll or Mr Hyde? Expert Rev Proteomics. 6, 527-537, 2009. Rashid, M.; Singla, D.; Sharma, A.; Kumar, M. and Raghava, G.P.S.Hmrbase: a database of hormones and their receptors. BMC Genomics.10, 307, 2009. Kapoor, D.; Singh, B.; Subramanian, K. and Guptasarma. P.Creation of a new eye lens crystallin (Gambeta) through structure-guided mutagenic grafting of the surface of betaB2 crystallin onto the hydrophobic core of gammaB crystallin. FEBS J., ;276, 3341-3353, 2009. Chandrayan, S.K. and Guptasarma, P.Attenuation of ionic interactions profoundly lowers the kinetic thermal stability of Pyrococcus furiosus triosephosphate isomerase. Biochim. Biophys. Acta., 1794, 905-912, 2009. Kaur, J.; Srikanth, C.V., and Bachhawat, A.K.Differential roles played by the native cysteine residues of the yeast glutathione transporter, Hgt1p. FEMS Yeast Res., 9, 849-866, 2009. Gupta, S.; Pathak, A.; Sinha, A. and Sarkar, D.Mycobacterium tuberculosis PhoP recognizes two adjacent direct-repeat sequences to form head-to-head dimmers. J. Bacteriol., 9, 7466-7476, 2009.  Ho P.C.; Lin, Y.W.; Tsui, Y.C.; Gupta, P.; Wei, L.N.A Negative Regulatory Pathway of GLUT4 Trafficking in Adipocyte: New Function of RIP140 in the Cytoplasm via AS160. Cell Metab.,  10, 516-523, 2009.  Aneja, R.; Datt, M.; Singh, B.; Kumar, S. and Sahni, G.Identification of a new exosite involved in catalytic turnover by the streptokinase-plasmin activator complex during human plasminogen activation. J. Biol. Chem., 284, 32642-32650, 2009.
  • Arora, P.K.;  Kumar, M.; Chauhan, A.; Ragava G.P. and Jain. R.K.OxDBase: a database of oxygenases involved in biodegradation. BMC Res Notes. 2, 67-69, 2009.
  • Rajpara, N., Patel, A.;Tiwari, N.; bahuguna, J.; Antony, A.; Choudhury, I.; Ghosh, A.; Jain, R.K.; Ghosh, A. and   Bhardwaj, A.K. Mechanism of drug resitance in a clinical isolate of Vibrio fluvialis: involvement of multiple plasmid and integrons. Int. J.  Antimicrob. Agents. 34, 220-225, 2009.
  • Kalia, S.B.; Kaushal, G.; Kumar, M.; Cameotra, S.S.; Sharma, A.; Verma, M.L. and Kanwar, S.S.Antimicrobial and toxicological studies of some metal complexes of 4- methylpiperazine-1-carbodithioate and phenanthroline mixed ligands. Brazilian Journal of Microbiology. 40, 916-922, 2009.
  • Kaur, H.; Kumar, C.; Junot, C.; Toledano, M. and Bachhawat, A.K.Dug1p is a Cys-Gly peptidase of the gamma -glutamyl cycle of Saccharomyces cerevisiae, and represents a novel family of Cys-Gly peptidases. J. Biol. Chem., 284,14493-14502, 2009.
  • Goyal, D.; Sahni, G. and Sahoo, D.K.Enhanced production of recombinant streptokinase in Escherichia coli using fed-batch cultivation. Bioresource Technol., 100, 4468-4474, 2009.
  • Mannan, M.A.; Sharma, S. and Ganesan, K.Total RNA isolation from recalcitrant yeast cells. Anal. Biochem.389, 77-79, 2009
  • Nangia, Y.; Wangoo, N.; Goyal, N.; Shekhawat, G. and Suri, C.R.A novel bacterial isolate stenotrophomonas maltophilia as living factory for synthesis of gold nanoparticles. Microbial. Cell Factories, 8, 39, 2009.
  • Newcombe, D.; Dekas, A..; Mayilraj, S. and Venkateswaran, K.Bacillus canaveralius sp. nov., an alkali-tolerant bacterium isolated from a spacecraft assembly facility. Int J Syst Evol Microbiol; 59, 2015 . 2019, 2009.
  • Land, M.; Lapidus, A.; Mayilraj, S.; Chen, F.; Copeland, A.; Del Rio, T.G.; Nolan, M.; Lucas, S.; Tice, H.; Cheng, J.; Chertkov, O; Bruce, D; Goodwin, L; Pitluck, S.; Rohde, M.; Göker, M; Pati, A.; Ivanova, N.; Mavromatis, K; Chen, A; Palaniappan, K.; Hauser, L.; Chang, Y.; Jeffries, C.C.; Brettin, T.; Detter, G.C.; Han, C.; Chain, P.; Tindall, B.J.; Bristow, J.; Eisen, J.A.; Markowitz, V.; Hugenholtz, P.; Kyrpides, N.C. and Hans-Peter KlenkComplete genome sequence of Actinosynnema mirum type strain (101T). Standards in Genomic Science, 1, 46-53, 2009.
  • Kumaran, S.; Hankuil, Y.; Krishnan, H.B. and Joseph, M.J.Assembly of the cysteine synthase complex and the regulatory role of protein-protein interactions. J. Biol. Chem., 284, 10268-10275, 2009.
  • Cameotra, S.S. and Singh, P.Synthesis of Rhamnolipid Biosurfactant and mode of Hexadecane Uptake by a Pseudomonas sp. Microb. Cell Fact., 8:16, 2009.
  • Kaundal, R. and Raghava, G.P.S.RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information. Proteomics, 9, 2324-2342, 2009.
  • Mayilraj, S.; Kaksonen, A.H.; Cord-Ruwisch, R.; Schumann, P.; Spröer, C.; Tindall, B.J. and Spring, S.Desulfonauticus autotrophicus sp. nov., a novel thermophilic sulfate-reducing bacterium isolated from oil-production water and emended description of the genus Desulfonauticus. Extremophiles, 13, 247-255, 2009.
  • Krishnamurthi, S.; Bhattacharya, A.; Mayilraj, S.; Saha, P.; Schumann, P. and Chakrabarti, T.Description of Paenisporosarcina quisquiliarum gen. nov., sp. nov., and reclassification of Sporosarcina macmurdoensis Reddy et al. 2003 as Paenisporosarcina macmurdoensis comb. nov. Int. J. Syst. Evol. Microbiol., 59, 1364-1370, 2009.
  • Krishnamurthi, S.; Chakrabarti, T. and Stackebrandt, E.Re-examination of taxonomic position of Bacillus silvestris Rheims et al. 1999 and proposal to transfer it to a new genus Solibacillus gen nov. as Solibacillus silvestris comb. nov. Int. J. Syst. Evol. Microbiol., 59, 1054-1058, 2009.
  • Pandey, J.; Chauhan, A. and Jain R.K.Integrative approaches for assessing ecological sustainability of in situ bioremediation. FEMS Microbial. Rev., 32, 324-375, 2009.
  • Patnaik, P.R.Cognitive optimization of microbial PHB production in an optimally dispersed bioreactor by single and mixed cultures. Bioprocess Biosyst. Eng., 32, 557-568, 2009.
  • Dubey, R.N.; Nakwal, N.; Bisht, K.K.; Saini, A.; Haldar, S. and Singh, J.Interaction of APC/C-E3 ligase with Swi6/HP1 and Clr4/Suv39 in heterochromatin assembly in fission yeast. J. Biol. Chem., 284, 7165-7176, 2009.
  • Chatterjee, S.; Barbora, L.; Cameotra, S.S. and Goswami, PSilk-fiber immobilized lipase-catalysed hydrolysis of emulsified sunflower oil. Appl. Biochem. Biotechnol., 157, 593-600, 2009.
  • Moon, L.S.; Jolly, R.S.; Kasetti, Y. and Bharatam, P.V.A new chiral shift reagent for the determination of enantiomeric excess and absolute configuration in cyanohydrins. Chem. Commun. (Camb)., 7, 1067-1069, 2009.
  • Pawan Gupta; Ping-Ching Ho; Sung, Gil Ha; Yi-Wei Lin and Li-Na WeiHDAC3 as a molecular chaperone for shuttling phosphorylated TR2 to PML: A novel deacetylase activity-independent function of HDAC3. PLoS ONE, 4, e4363, 2009.
  • Patnaik, P.R.A hybrid simulator for improved filtering of noise from oscillating microbial fermentations. Biochem. Eng. J., 39, 389-396, 2008.
  • Rishi, L.; Gahlot, S.; Kathania, M. and Majumdar, S.Pentoxifylline induces apoptosis in vitro in cutaneous T cell lymphoma (HuT-78) and enhances FasL mediated killing by upregulating Fas expression. Biochem Pharmacol., 77, 30-45. 2009.
  • Kaur J, Bachhawat AK.A modified Western blot protocol for enhanced sensitivity in the detection of a membrane protein. Anal. Biochem., 384, 348-349, 2009.
  • Patnaik, P.R.Transient response analysis of the eukaryotic chemosensory system to intra-cellular fluctuations. J. Bioinform. Comput. Biol., 7, 93-105, 2009.
  • Kumar, M. and Raghava, G.P.S.Prediction of Nuclear Proteins using SVM and HMM Models. BMC Bioinformatics. 10, 22, 2009
  • Garg, S.K.; Alam, M.S.; Bajpai, R.;Radhakishan, K.V. and Agrawal,P.Redox Biology of Mycobacterium tuberculosis H37Rv: protein-protein interaction between GlgB and WhiB1 involves exchange of thiol-disulfide. BMC Biochem, 10, 1, 2009.
  • Singh, P.; Dhanjal, S.; Singh, K.V.; Suri, C.R. and Cameotra, S.S.Monitoring atrazine uptake by a new fluorometric assay. Current Science. 96, 268-271, 2009.
  • Singh, G.; Thakur, M.; Chakraborti, P.K. and Dey, C.S.Evidence for the presence of R250G mutation at the ATPase domain of topoisomerase II in an arsenite-resistant Leishmania donovani exhibiting a differential drug inhibition profile. Int. J. Antimicrob. Agents. 33, 80-85, 2009.
  • Alam, M.S.; Garg, S.K. and Agrawal, P.Studies on structural and functional divergence among seven WhiB proteins of Mycobacterium tuberculosis H37Rv. FEBS Journal. 276, 76-93, 2009.
  • Minhas, A.; Biswas, D. and Mondal, A.K.Development of host and vector for high efficiency transformation and gene disruption in Debaryomyces hansenii. FEMS Yeast Res., 9, 95-102, 2009.

2008

  • Saluja, P. and Prasad, G.S. Candida ruelliae sp. nov., a novel yeast species isolated from flowers of Ruellia sp. (Acanthaceae). FEMS Yeast Res., 8, 660-666, 2008.
  • Thakur, A.; Kaur, J. and Bachhawat, A.K. Pgt1, a glutathione transporter from the fission yeast Schizosaccharomyces pombe. FEMS Yeast Res., 8, 916-929, 2008.
  • Kaur, R.; Ahuja, S.; Anand, A.; Singh, B.; Stark, B.C.; Webster, D.A. and Dikshit, K.L. Functional implications of the proximal site hydrogen bonding network in Vitreoscilla hemoglobin (VHb): role of Tyr95 (G5) and Tyr126 (H12). FEBS Lett., 582, 3494-3500, 2008.
  • Sharm, M.K.; Jani, D.; Thungapathra, M.; Gautam, J.K.; Meena, L.S.; Singh, Y.; Ghosh, A.; Tyagi, A.K. and Sharma, A.K. Expression of accessory colonization factor subunit A (ACFA) of Vibrio cholerae and ACFA fused to cholera toxin B subunit in transgenic tomato (Solanum lycopersicum). J. Biotechnol., 135, 22-27, 2008.
  • Kumar, M.; Gromiha, A.M. and Raghava, G.P.S. Prediction of RNA binding sites in a protein using SVM and PSSM profile. Proteins-Structure Function And Bioinformatics, 71, 189-194, 2008.
  • Sharma, M.K.; Singh, N.K.; Jani, D.; Sisodia, R.; Thungapathra, M.; Gautam, J.K.; Meena, L.S.; Singh, Y.; Ghosh, A.; Tyagi, A.K. and Sharma, A.K. Expression of toxin co-regulated pilus subunit A (TCPA) of Vibrio cholerae and its immunogenic epitopes fused to cholera toxin B subunit in transgenic tomato (Solanum lycopersicum). Plant Cell Rep., 27, 307-318, 2008.
  • Cameotra, S.S. and Singh, P. Bioremediation of oil sludge using crude biosurfactants. Int. Biodeterioration & Biodegradation., 62, 274-280, 2008.
  • Jhamb, K.; Jawed, A. and Sahoo, D.K. Immobilized chaperones: A productive alternative to refolding of bacterial inclusion body proteins. Process Biochem., 43, 587-597,2008.
  • Guptasarma, P. Solution-state characteristics of the ultraviolet A-induced visible fluorescence from proteins. Arch Biochem Biophys., 478, 127-129, 2008.
  • Kapoor, D.; Kumar, V.; Chandrayan, S.K.; Ahmed, S.; Sharma, S.; Datt, M.; Singh, B.; Karthikeyan, S. and Guptasarma, P. Replacement of the active surface of a thermophile protein by that of a homologous mesophile protein through structure-guided 'protein surface grafting' Biochim. Biophys. Acta., 1784, 1771-1776, 2008. .
  • Gandhi, S.; Sharma, P.; Capalash, N.; Verma, R.S. and Suri, C.R. Group-selective antibodies based fluorescence immunoassay for monitoring opiate drug heroin and its metabolites. Anal. Bioanal. Chem., 392, 215-222, 2008.
  • Aggarwal, M.; Radha Kishan, K.V.and Mondal, A.K. Creation of salt-insensitive 3'(2'), 5'-bisphosphate nucleotidase by modelling and mutagenesis approach. Arch. Biochem. Biophys., 469, 174-183, 2008.
  • Kush, A. and Raghava, G.P.S. AC2Dgel: Analysis and Comparison of 2D gels. Journal of Proteomics & Bioinformatics, 1, 43-46, 2008.
  • Shanmugam, V.; Sharma, V. and AnanthapadmanabanGenetic relatedness of trichoderma isolates antagonistic against fusarium oxysporum f.sp. dianthi Folia Microbial., 53, 130-138, 2008. inflicting carnation wilt.
  • Krishnamurthi, S. and Chakrabarti, T. Proposal for transfer of Pelagibacillus goriensis Kim et al. 2007 to the genus Terribacillus as Terribacillus goriensis comb. nov. Int. J. Syst. Evol. Microbiol. 58, 2287-2291, 2008.
  • Sethi, D.; Garg, A. and Raghava, G.P.S. DPROT: prediction of disordered proteins using evolutionary information. Amino Acids. 35, 599-605, 2008.
  • Kapoor, D.; Kumar, V.; Chandrayan, S.K.; Ahmed, S.; Sharma, S.; Datt, M.; Singh, B.; Karthikeyan, S. and Guptasarma, P. Replacement of the active surface of a thermophile protein by that of a homologous mesophile protein through structure-guided 'protein surface grafting' Biochim. Biophys. Acta. 1784, 1771-1776, 2008.
  • Gandhi, S.; Sharma, P.; Capalash, N.; Verma, R.S. and Suri, C.R. Group-selective antibodies based fluorescence immunoassay for monitoring opiate drug heroin and its metabolites. Anal. Bioanal. Chem. 392, 215-222, 2008.
  • Saxena, R.; Karthikeyan, S.; Datt, M.; Singh, B. and Chakraborti, P. K. Three consecutive arginines are important for the mycobacterial peptide deformylase enzyme activity. J. Biol. Chem. 283, 23754-23764, 2008.
  • Thakur, M. and Chakraborti, P.K. Ability of PknA, a mycobacterial eukaryotic-type serine/threonine kinase to transphosphorylate MurD, a ligase involved in the process of peptidoglycan biosynthesis. Biochem. J. 415, 27-33, 2008.
  • Alam, M. S. and Agrawal, P. Matrix-assisted refolding and redox properties of WhiB3/Rv3416 of Mycobacterium tuberculosis H37Rv. Protein Expr. Purif. 61, 83-91, 2008.
  • Kumar, M.; Thakur, V. and Raghava, G.P.S. COPid: composition based protein identification. In Silico Biol. 8, 121-128, 2008.
  • Dhiman, R.; Kathania, M.; Raje, M. and Majumdar, S. Inhibition of bfl-1/A1 by siRNA inhibits mycobacterial growth in THP-1 cells by enhancing phagosomal acidification. Biochim Biophys Acta. 1780, 733-42, 2008.
  • Aggarwal, M.; Radha Kishan, K.V.and Mondal, A.K. Creation of salt-insensitive 3'(2'), 5'-bisphosphate nucleotidase by modelling and mutagenesis approach. Arch. Biochem. Biophy. 469, 174-83, 2008.
  • Sharma, S. and Guptasarma, P. Evidence of Native-like Substructure(s) in Polypeptide Chain of Carbonic Anhydrase Deposited into Insoluble Aggregates During Thermal Unfolding. Protein J. 27, 50-58.
  • Garg, A. and Raghava, G.P.S.ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins. BMC Bioinformatics, 9, 503, 2008.
  • *Cameotra, Swaranjit Singh and Singh, PoojaBioremediation of oil sludge using biosurfactants. Int. Biodeterio. Biodegradation 62: 274-280, 2008
  • Swaranjit Singh Cameotra Biosurfactant-enhanced bioremediation of hydrophobic pollutants. J. Biotechnol. 136, 678, 2008
  • Pawaria, S.; Lama, A.; Raje, M. and Dikshit, K.L. Responses of Mycobacterium tuberculosis hemoglobin promoters to in vitro and in vivo growth conditions. Appl. Environ. Microbiol.,74, 3512-3522, 2008.
  • Patnaik, P.R. Response coefficient analysis of a fed-batch bioreactor to dissolved oxygen perturbation in complementary cultures during PHB production. J. Biol. Eng., 2, 4, 2008.
  • Bisht, K. K.; Arora, S.; Ahmed, S. and Singh, JagmohanRole of heterochromatin in suppressing subtelomeric recombination in Fission yeast. Yeast, 25, 537-548, 2008.
  • Yadav, S.; Datt, M.; Singh, B.; and Sahni, G. Role of the 88-97 loop in plasminogen activation by streptokinase probed through site-specific mutagenesis. Biochim. Biophys. Acta., 1784, 1310-1318, 2008.
  • Sharma, S. and Guptasarma, P. Evidence of Native-like Substructure(s) in Polypeptide Chain of Carbonic Anhydrase Deposited into Insoluble Aggregates During Thermal Unfolding. Protein J. 27, 50-58, 2008.
  • Dongre M, Tripathi R, Jain V, Raychaudhuri S. Functional independence of a variant LuxOPL91 from a non-O1 non-O139 Vibrio cholerae over the activity of CsrA and Fis. J. Med. Microbiol. 57, 1041-1045, 2008
  • Verma, R.; Tiwari, A.; Kaur, S.; Varshney, G.C. and Raghava, G.P.S. Identification of proteins secreted by malaria parasite into erythrocyte using SVM and PSSM profiles. BMC Bioinformatics. 16, 9:201, 2008.
  • Garg, A. and Raghava, G.P.S A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search. In Silico Biol., 8, 12, 2008.
  • Shukla, A. ; Raje, M. and Guptasarma, P.. Coalescence of spherical beads of retro-HSP12.6 into linear and ring-shaped amyloid nanofibers. Biochemistry (Moscow) 73, 681-685, 2008.
  • Kalita, M.K.; Nandal, U.K.; Pattnaik, A.; Sivalingam, A,; Ramasamy, G.; Kumar, M.; Raghava, G.P.S. and Gupta, D. CyclinPred: a SVM-based method for predicting cyclin protein sequences. PLoS ONE, 3, e2605, 2008.
  • Sharma, S. and Guptasarma, P. Dimorphic aggregation behavior of a fusion polypeptide incorporating a stable protein domain (EGFP) with an amyloidogenic sequence (retroCspA). FEBS Lett., 582, 2203-2211, 2008.
  • Mir, M.A. and Agrewala, J.N. Signaling through CD80: an approach for treating lymphomas. Expert Opin. Ther. Targets. 12, 969-979, 2008.
  • Thakur, M.; Chaba, R.; Mondal, A.K. and Chakraborti, P.K. Inter-domain interaction reconstitutes the functionality of PknA, a eukaryotic-type Ser/Thr kinase from Mycobacterium tuberculosis. J. Biol. Chem., 283, 8023-8033, 2008.
  • Chandrayan, S.K. & Guptasarma, P. Partial destabilization of native structure by a combination of heat and denaturant facilitates cold denaturation in a hyperthermophile protein. Proteins : Structure, Function & Bioinformatics, 72, 539-546, 2008.
  • Ahmed, S.; Kapoor, D.; Singh, B. and Guptasarma, P. Conformational behavior of polypeptides derived through simultaneous global conservative site-directed mutagenesis of chymotrypsin inhibitor 2. Biochim. Biophys. Acta : Proteins and Proteomics, 1784, 796-805, 2008.
  • Ahmed, S.; Shukla, A. and Guptasarma, P. Folding behavior of a backbone reversed protein : Reversible polyproline type II to beta-sheet thermal transitions in retro-GroES multimers with GroES-like features. Biochim. Biophys. Acta : Proteins and Proteomics, 1784, 916-923, 2008.
  • Dhiman, R.; Kathania, M.; Raje, M. and Majumdar, S. Inhibition of bfl-1/A1 by siRNA inhibits mycobacterial growth in THP-1 cells by enhancing phagosomal acidification. Biochim. Biophys. Acta., 1780, 733-742, 2008.
  • Ahmed, S. and Guptasarma, P. Design of a soluble mini-protein through tandem duplication of the minimally-engineered beta hairpin 'tongue' motif of alpha hemolysin. Biochimie, 90, 957-967, 2008.
  • Lata, S. and Raghava, G.P.S. PRRDB: a comprehensive database of pattern-recognition receptors and their ligands. BMC Genomics, 2008, 9, 180, 2008.
  • Kumar, R, and Rajagopal, K. Single-step overlap-primer-walk polymerase chain reaction for multiple mutagenesis without overlap extension. Anal. Biochem., 377, 105-107, 2008.
  • Manickam, N.; Ghosh, A.,Jain, R.K. and Mayilraj, S. Description of a novel indole oxidizing bacterium Pseudomonas indoloxydans sp. nov., isolated from a pesticide contaminated site. Syst. Appl. Microbiol., 31, 101-107, 2008.
  • Chandrayan, S.K.; Dhaunta, N. and Guptasarma, P. Expression, purification, refolding and characterization of a putative lysophospholipase from Pyrococcus furiosus : Retention of structure and lipase/esterase activity in the presence of water-miscible organic solvents at high temperatures. Protein Expr. Purif., 59, 327-333, 2008.
  • Wangoo, N.; Bhasin, K.K.; Mehta, S.K. and Suri, C.R.Synthesis and capping of water-dispersed gold nanoparticles by an amino acid: Bioconjugation and binding studies. J. Colloid Interface Sci. 323, 247-254, 2008.
  • Kaur, J.; Boro, R.C.; Wangoo, N.; Singh, K.R. and Suri, C.R.Direct hapten coated immunoassay format for the detection of atrazine and 2,4-dichlorophenoxyacetic acid herbicides. Anal. Chim. Acta. 607,92-99, 2008.
  • Wangoo, N.; Bhasin, K.K.; Boro, R. and Suri, C.R.Facile synthesis and functionalization of water-soluble gold nanoparticles for a bioprobe. Anal. Chim. Acta. 610, 142-148, 2008.
  • Wangoo, N.; Shekhawat, G.S. and Suri, C.R. Interaction of gold nanoparticles with protein: A spectroscopic study to monitor protein conformational change. Appl. Phys. Lett. 92, 133104, 2008.
  • Suri, C.R.; Kaur J.; Gandi, S. and Shekhawat, G.S.Lable-free ultra-sensitive detection of atrazine based on nanomechanics. Nanotechnology, 19, 235502, 2008.
  • Verma, A., Sharma, S., Ganguly, N.K., Majumdar, S., Guptasarma, P., and Luthra-Guptasarma, M. Identification and characterization of a spontaneously aggregating amyloid-forming variant of human PrP((90-231)) through phage-display screening of variants randomized between residues 101 and 112. Int. J. Biochem. Cell Biol., 40, 663-676, 2008.
  • Vyas, R.; Kumar, V.; Panjikar, S.; Karthikeyan, S.; Kishan, K.V.; Tewari, R. and Weiss, M.S. Purification, crystallization and preliminary X-ray diffraction analysis of aspartate semialdehyde dehydrogenase (Rv3708c) from Mycobacterium tuberculosis. Acta. Crystallogr. Sect F Struct. Biol. Cryst. Commun., 64, 167-170, 2008.
  • Wangoo, N.; Bhasin, K.K.; Boro, R. and Suri, C.R. Facile synthesis and functionalization of water-soluble gold nanoparticles for a bioprobe. Anal. Chim. Acta., 610, 142-148, 2008.
  • Sharma, S. and Guptasarma, P. Evidence of Native-like Substructure(s) in Polypeptide Chain of Carbonic Anhydrase Deposited into Insoluble Aggregates During Thermal Unfolding. Protein J., 27, 50-58, 2008.
  • Wallet, M.A.; Sen, Pradip; Flores, R.R.; Wang, Y.; Yi, Zuoan; Huang, Y.; Mathews, C.E.; Earp, H.S.; Matsushima, G.; Wang, Bo and Roland T. MerTK is required for apoptotic cell induced T cell tolerance. J. Exp. Med., 205, 219-232, 2008.
  • Sinha, A.; Gupta, S.; Bhutani, S.; Pathak, A. and Sarkar, D. PhoP-PhoP interaction at adjacent PhoP binding sites is influenced by protein phosphorylation. J. Bacteriol., 190, 1317-1328, 2008.
  • Ahmed, S. and Singh JagmohanRT-PCR method for selective detection of silent gene transcripts in silencing mutants in hemothallic strains of Schizosaccharomyces pombe. Biotechniques, 44, 54-58, 2008.
  • Gowthaman, U. and Agrewala, J.N. In silico tools for predicting peptides binding to HLA-class II molecules: more confusion than conclusion. J. Proteome. Res. 7, 154-163, 2008.
  • Kaur, J.; Boro, R.C.; Wangoo, N.; Singh, K.R. and Suri, C.R. Direct hapten coated immunoassay format for the detection of atrazine and 2,4-di chlorophenoxyacetic acid herbicides. Anal. Chim. Acta., 607, 92-99, 2008.
  • Chakraborti, D; Basu, J.M.; Sen, Pradip; Sundar, S. and Roy, S.Human placental extract offers protection against pentavalent antimonial-sensitive and resistant experimental visceral leishmaniasis: a pilot study for phase I clinical trial. Ann. Trop. Med. Parasitol., 102, 21-38, 2008.
  • Aggarwal, M.; Radha Kishan, K.V.and Mondal, A.K.Creation of salt-insensitive 3'(2'), 5'-bisphosphate nucleotidase by modelling and mutagenesis approach. Arch. Biochem. Biophys., 469, 174-183, 2008.

2007

  • Kaur, J.; Singh, K.V.; Boro, R.; Thampi, K.R.; Raje, M.; Varshney, G.C. and Suri, C.R.Immunochromatographic dipstick assay format using gold nanoparticles labeled protein-hapten conjugate for the detection of atrazine. Environ. Sci. Technol. 41, 5028-5036, 2007.
  • Vivona, S.; Gardy, J.L.; Ramachandran, S.; Brinkman, F.S.L.; Raghava, G.P.S.; Flower, D.R. and Filippini, F. Computer aided biotechnology: from immunoinformatics to reverse vaccinology. Trends Biotechnol., 26, 190-200, 2008.
  • Lata, S. and Raghava, G.P.S. CytoPred: a server for prediction and classification of cytokines. Protein Eng. Des. Sel., 21, 279-282, 2008.
  • Pashov, A.; Monzavi-Karbassi, B.; Raghava, G.P.S. and Kieber-Emmons, T. Peptide mimotopes as prototypic templates of broad-spectrum surrogates of carbohydrate antigens for cancer vaccination. Crit. Rev. Immunol., 27, 247-270, 2007.
  • Raghava, G. P. S. Prediction of subcellular localization of proteins using machine learning techniques and evolutionary information. Amino Acids, 33, X-XI, 2007.
  • Bachhawat, N. and Singh, B. Mycobacterial PE_PGRS proteins contain calcium-binding motifs with parallel beta-roll folds. Genomics Proteomics Bioinformatics, 5:236-241, 2007.
  • Saha, S. and Raghava, G. P. S. Prediction of allergenic proteins and mapping of IgE epitopes in allergens. Nature Protocols 10.1038/nprot.2007.505, 2007 (Online)
  • Singh, H. and Raghava, G. P. S. Prediction and mapping of promiscuous MHC class II binders in an antigen sequence. Nature Protocols 10.1038/nprot.2007.502, 2007 (Online)
  • Lata, S.; Sharma, B.K. and Raghava, G. P. S. Analysis and prediction of antibacterial peptides. Nature Protocols 10.1038/nprot.2007.503, 2007 (Online)
  • Kumar, M.; Verma, R. and Raghava, G. P. S. Mitpred2: An improved method for predicting mitochondrial proteins using SVM and HMM. Nature Protocols 10.1038/nprot.2007.488, 2007 (Online)
  • Suresh, K.; Mayilraj, S.; Bhattacharya, A. and Chakrabarti, T.Planococcus columbae sp. nov., isolated from pigeon faeces. Int. J. Syst. Evol. Microbiol., 57, 1266-1271, 2007.
  • Suresh, K.; Prakash, D.; Rastogi, N. and Jain, R.K. Clostridium nitrophenolicum sp. nov., a novel anaerobic p-nitrophenol-degrading bacterium, isolated from a subsurface soil sample. Int. J. Syst. Evol. Microbiol., 57, 1886-1890, 2007.
  • Muthukrishnan, S.; Garg, A. and Raghava, G.P.S. Oxypred: prediction and classification of oxygen-binding proteins. Genomics Proteomics Bioinformatics, 5, 250-252, 2007.
  • Kumar, M., Gromiha, M.M. and Raghava, G.P.S. Prediction of RNA binding sites in a protein using SVM and PSSM profile. Proteins: Structure, Function and Bioinformatics, 71, 189-194, 2007.
  • Shahi, P.; Sharma, R.; Sanger, S.; Kumar, I. and Jolly, R.SFormation of amyloid fibrils via longitudinal growth of oligomers. Biochemistry. 46, 7365-7373, 2007.
  • Tiwary, B.N.; Prasad, B.; Ghosh, A.; Kumar, S. and Jain, R.K. Characterization of two novel biovar of Agrobacterium tumefaciens isolated from root nodules of Vicia faba. Curr. Microbiol., 55, 328-333, 2007.
  • Shukla, A.; Sharma, S. and Guptasarma, P. Confocal spectrofluorimetric evidence for the hetero-aggregation of sequence-scrambled forms of two model all-beta sheet proteins. Int. J. Biol. Macromol., 41, 650-654. 2007.
  • Kumar, M.; Gromiha, M.M. and Raghava G.P.S. Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC Bioinformatics. 8, 463, 2007.
  • Mir, M.A. and Agrewala, J.N. Influence of CD80 and CD86 co-stimulation in the modulation of the activation of antigen presenting cells. Curr. Immunol. Rev., 3, 160-169, 2007.
  • Ghosh, A.; Goyal, A. and Jain, R.K. Study of methanol-induced phenotypic changes in a novel strain of Acinetobacter lwoffii. Arch. Microbiol.,188, 533-539, 2007.
  • Patnaik, P.R. Sensitivity propagations in response to start-up perturbations during batch fermentations with complementary cultures. Chem. Eng. Res. Des., 85, 1079-1085, 2007.
  • Patnaik, P.R. "Intelligent" descriptions of microbial kinetics in finitely dispersed bioreactors: neural and cybernetic models for PHB biosynthesis by Ralstonia eutropha. Microb. Cell Fact., 8, 6-23, 2007.
  • Patnaik, P.R. Fractal analysis of the attenuation of noise inflow to bioreactors under monotonic, oscillating and chaotic conditions. Intl. J. Chem. Reactor Eng., 5, A23, 2007.
  • Patnaik, P.R. Fractal characterization of fermentations with budding yeast under deterministic and chaotic conditions. Fractals, 15, 163-171, 2007.
  • Kaur, J.; Singh, K.V.; Boro, R.; Thampi, K.R.; Raje, M.; Varshney, G.C. and Suri C.R. Immunochromatographic dipstick assay format using gold nanoparticles labeled protein-hapten conjugate for the detection of atrazine. Environ. Sci. Technol., 41, 5028-5036, 2007.
  • Shukla, A.; Sharma, S. and Guptasarma, P. Confocal spectrofluorimetric evidence for the hetero-aggregation of sequence-scrambled forms of two model all-beta sheet proteins. Int. J. Biol. Macromol., 41, 650-654,2007.
  • Kapoor, D.; Chandrayan, S.K.; Ahmed, S. and Guptasarma, P. Using DNA sequencing electrophoresis compression artifacts as reporters of stable mRNA structures affecting gene expression. Electrophoresis, 28, 3862-3867, 2007.
  • Bharadwaj, S.; Shukla, A.; Mukherjee, S.; Sharma, S.; Guptasarma, P.; Chakraborti, A.K. and Chakrabarti, A. Putative structure and characteristics of a red water-soluble pigment secreted by Penicillium marneffei. Med. Mycol., 45, 419-427, 2007.
  • Andrianifahanana, M.; Singh, A.P.; Nemos, C.; Ponnusamy, M.P.; Moniaux, N.; Mehta, P.P.; Varshney, G.C. and Batra, S.K. IFN-Y-induced expression of MUC4 in pancreatic cancer cells is mediated by STAT-1 upregulation: a novel mechanism for IFN-Y response. Oncogene, 26, 7251-7261, 2007.
  • Rishi, L.; Dhiman, R.; Raje, M. and Majumdar S. Nitric oxide induces apoptosis in cutaneous T cell lymphoma (HuT-78) by downregulating constitutive NF-kappaB. Biochim Biophys Acta., 1770; 1230-1239, 2007.
  • Rashid, M.; Saha, S. and Raghava, G.P.S. Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs. BMC Bioinformatics, 8, 337, 2007.
  • Moniaux, N.; Chaturvedi, P.; Varshney, G.C.; Meza, J.L.; Rodriguez-Sierra, J.F.; Aubert, J.P. and Batra, S.K. Human MUC4 mucin induces ultra-structural changes and tumorigenicity in pancreatic cells. Br. J. Cancer, 97, 345-357, 2007.
  • Osman, S.; Moissl, C.; Hosoya, N.; Briegel, A.; Mayilraj, S.; Satomi M. and Venkateswaran, K. Tetrasphaera remsis sp. nov., isolated from the Regenerative Enclosed Life Support Module Simulator (REMS) air system. Int. J. Syst. Evol. Microbiol., 57, 2749-2753, 2007.
  • Goyal, D.; Sahoo, D.K. and Sahni, G. Hydrophobic interaction expanded bed adsorption chromatography (HI-EBAC) based facile purification of recombinant streptokinase from E. coli inclusion bodies. J. Chromatogr. B. Analyt. Technol. Biomed. Life Sci., 850, 384-391, 2007.
  • Radhakishan, K.V. Structural Biology, Protein Conformations and Drug Designing. Current Protein and Peptide Science. 8, 376-380, 2007
  • Kaur, H.; Garg, A. and Raghava, G. P. S. PEPstr: A de novo method for tertiary structure prediction of small bioactive peptides. Protein Pept Lett., 14, 626-30, 2007.
  • Lata, S.; Sharma, B.K. and Raghava, G. P. S. Analysis and prediction of antibacterial peptides. BMC Bioinformatics, 8, 263, 2007.
  • Mishra, N.; Kumar, M. and Raghava, G. P. S. Support vector machine based method for predicting Glutathione S-transferases proteins. Protein Pept Lett., 6, 575-80, 2007.
  • Bhasin, M.and Raghava, G. P. S. A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes. J. Biosci., 32, 31-42. 2007.
  • Greenbaum et al. ...... Raghava, G.P.S. Towards a consensus on datasets and evaluation metrics for developing B cell epitope prediction tools. J. Mol. Recognit., 20, 75-82, 2007.
  • Ganguli, D.; Kumar, C. and Bachhawat, A.K. The alternative pathway of glutathione degradation is mediated by a novel protein complex involving three new genes in Saccharomyces cerevisiae. Genetics , 175, 1137-1151, 2007.
  • Kaur, J. and Bachhawat, A.K. Yct1p, a novel, high-affinity, cysteine specific transporter from the yeast Saccharomyces cerevisiae. Genetics, 176, 877-890, 2007.
  • Patnaik. P.R. Robustness analysis of the E. coli chemosensory system to perturbations in chemoattractant concentrations. Bioinformatics, 23, 875-881, 2007.
  • Manickam, N.; Mishra, R. and Mayilraj, S. A novel pathway for the biodegradation of gamma-hexachlorocyclohexane by a Xanthomonas sp. Strain ICH12. J. Appl. Microbiol., 102, 1468-1478, 2007.
  • Sharma, N.; Pandey, J.; Gupta, N. and Jain, R.K. Growth and physiological response of Arthrobacter protophormiae RKJ100 toward higher concentrations of o-nitrobenzoate and p-hydroxybenzoate. FEMS Microb iol. Lett., 271, 65-70, 2007.
  • Patnaik, P.R. Hybrid filtering of feed stream noise from oscillating yeast cultures by combined Kalman and neural network configurations. Bioproc. Biosyst. Eng., 30, 181-188, 2007.
  • Patnaik, P.R. A reappraisal of the plasmid stability problem in chemostat cultures. Ind. J. Biotechnol., 6, 267-270, 2007.
  • Patnaik, P.R. Analysis of the effect of flow interruptions on fed-batch fermentation for PHB production by Ralstonia eutropha in finitely dispersed bioreactors. Chem. Eng. Commun., 194, 603-617, 2007.
  • Bhardwaj, S.; Sutar, R.; Bachhawat, A.K.; Singhi, S. and Chakrabarti, A. PCR-based identification and strain typing of Pichia anomala using the ribosomal intergenic spacer region IGS1. J. Med. Microb. 56, 185-189, 2007.
  • Cameotra, S.S. Preservation of microorganisms as deposits for patent application. Biochem. Biophys. Res. Comm., 353, 849-850, 2007.
  • Agrewala, J.N.; Brown, D.M.; Lepak, N.M.; Duso, D.; Huston, G. and Swain, S.L. Unique Ability of Activated CD4+ T Cells but Not Rested Effectors to Migrate to Non-lymphoid Sites in the Absence of Inflammation. J. Biol. Chem., 282, 6106-6115, 2007.
  • Alam, M.S.; Garg, S.K. and Agrawal, P. Molecular function of WhiB4/Rv3681c of Mycobacterium tuberculosis H37Rv: a[4Fe-4S] cluster co-ordinating protein disulphide reductase. Molecular Microbiol., 63, 1414-1431, 2007.
  • Pandey, J.; Ganesan, K. and Jain, R.K. Variations in T-RELF profiles with differing chemistries of fluorescent dyes used for labeling the PCR primers. J. Microbiol. Method, 68, 633-638, 2007.
  • Chaudhuri, S.R.; Mallam, J.N.; Barrios, P.C.; Wadhwa, P.N.; Hurwitz, M.Y. and Hurwitz, R.L. Modulation of adenoviral transduction in vitro and in vivo by hyaluronan and its receptor CD44. Molecular Therapy, 15, 566-570, 2007.
  • Dhiman, R.; Raje, M. and Majumdar, S.Differential expression of NF-kB in mycobacteria infected THP-1 affects apoptosis. Biochim. Biophy. Acta., 1770, 649-659, 2007.
  • Sen, Pradip; Wallet M.A.; Zuoan, Y.; Huang, Y.; Henderson, M.; Mathews, C.E.; Earp, H.S.; Matsushima, G.; Baldwin, A.S. and Tisch, R.Apoptotic cells induce MerTK-dependent blockade of NF-kB activation in dendritic cells. Blood, 109, 653-660, 2007.
  • Raje, C.I.; Kumar, S.; Harle, A; Nanda, J.S. and Raje, M.A microphage cell surface localized Glyceraldehyde-3-phosphate dehydrogenase functions as a transferring receptor. J. Biol. Chem., 282, 3252-3261, 2007.
  • Garg, S.K.; Alam, M.S.; Radhakishan, K.V. and Agrawal, P.Expression and characterization of .-(1,4)-glucan branching enzyme Rv1326c of Mycobacterium tuberculosis H37Rv. Protein Expr. Purif., 51, 198-208, 2007.
  • Saluja, Puja and Prasad, G.S.Debaryomyces singareniensis sp.nov., a novel yeast species isolated from a coal mine soil in India. FEMS Yeast Research, 17, 132-135, 2007.
  • Ghosh, A.; Khurana, M.; Mayilraj, S. and Jain, R.K.Bacillus lehensis sp. Nov., an alkalitolerant bacterium isolated from soil of Leh, India. Int. J. Syst. Evol. Microbiol., 57, 238-242, 2007.
  • Saluja, Puja and Prasad, G.S.Cryptococcus rajasthanensis sp. nov., an anamorphic yeast species related to Cryptococcus laurentii, isolated from Rajasthan, India Int. J. Syst. Evol. Microbiol., 57, 414 - 418, 2007.
  • Kaur, J.; Rajamohan, G. and Dikshit, K.L.Cloning and characterization of promoter-active DNA sequences from streptococcus equisimilis. Curr. Microbiol., 54, 48-53, 2007.
  • Sharma, S.; Chopra, K.; Kulkarni, S.K. and Agrewala, J.N.Resveratrol and curcumin suppress immune response through CD28/CTLA-4 and CD80 costimulatory pathway. Clin. Exp. Immunol., 147, 155-163, 2007.
  • Garg, S.K.; Alam, Md. S.; Soni, V.; Radhakishan, K.V. and Agrawal, P. Characterisation of Mycobacterium tuberculosis WhiB1/ Rv3219 as a protein disulfide reductase. Protein Expr.Purif., 52, 422-432, 2007.

2006

  • Saha, S., Zack, J., Singh, B. and Raghava, G. P. S. VGIchan: Prediction and classification of voltage-gated ion channels. Genomics Proteomics Bioinformatics, 4, 253-258, 2006. 
  • Jain V.; Dongre M. and Raychaudhuri S.Interaction of Vibrio cholerae O139 with an intestinal parasite, Entamoebahistolytica. J Med Microbiol., 55, 1755-1756,2006.
  • Luu, R.A.; Gurnani, K.; Dudani, R.; Kammara, Rajagopal; Faassen, H.V.; Sirard, J.C.; Krishnan, L. and Sad, S. Delayed expansion and contraction of CD8+ T cell response during infection with virulent Salmonella typhimurium. J. Immunol., 177, 1516-1525 , 2006.
  • Srinivasan, V.B.; Virk, R.K.; Kaundal, A.; Chakraborti, R.; Datta, B.; Ramamurthy, T.; Mukhopadhyay and Ghosh, AmitMechanism of drug resistance in clonally related clinical isolates of Vibrio fluvialis Isolated in Kolkata, India. Antimocrob. Agents Chemother., 50, 2228-2432, 2006.
  • Patnaik, P.R.Feasibility and uniqueness of stationary states of nonideal recombinant fermentations React. Kinet. Catal. Lett., 87, 11-18, 2006.
  • Patnaik, P.R. External, extrinsic and intrinsic noise in cellular systems: analogies and implications for protein synthesis. Biotechnol. Mol. Biol. Rev., 1, 123-129, 2006.
  • Patnaik, P.R. Enhancement of PHB biosynthesis by Ralstonia eutropha in fed-batch cultures by neural filtering and control. Food Bioprod. Process., 84 (C2), 150-156, 2006.
  • Patnaik P.R. Fed-batch optimization of PHB synthesis through mechanistic, cybernetic and neural approaches. Bioautomation, 5, 23-38, 2006.
  • Shivaji, S.; Chaturvedi, P.; Suresh, K.; Reddy, C.B.S.; Wainwrite, M.; Narlikar, J.V. and Bhargava, P.M. Bicillus aerius sp. nov., Bicillus aerophilus sp. nov., Bacillus stratosphericus sp. nov., and Bacillus altitudinis sp. nov., isolated from cryogenic tubes used for collecting air samples from high altitudes. Int. J. Syst. Evol. Microbiol., 56, 1465-1473, 2006.
  • Pawaria, S.; Gambhir, V.; Rajamohan, G.; Varshney, G.C. and Dikshit, K.L. Intracellular growth and survival of Salmonella typhimurium carrying truncated hemoglobins of Mycobacterium tuberculosis. Microbial. Pathog., 42, 119-128, 2007.
  • Kumar, Manoj; Jain, S.K.; Pasha, S.T.; Chhatopadhyay, D.; Shiv Lal and Rai, A. Genomic diversity in the regulatory nef gene sequences in Indian isolates of HIV-1: emergence of a distinct subclade and predicted implications. AIDS Research and Human Retroviruses, 22, 1206-1219, 2006.
  • Raje, M.; Dhiman, R.; Majumdar, S.; Dass, T.; Dikshit, K.L. and Kaur, R. Charged nylon membrane substrate for convenient and versatile high resolution microscopic analysis of E. coli and mammalian cells in suspension culture. Cytotechnol., 51, 111-117, 2006.
  • Paul, D.; Singh, R.and Jain, R.K. Chemotaxis of Ralstonia sp. SJ98 towards p-nitrophenol in soil. Environ Microbiol., 8, 1797-1804, 2006.
  • Manikandan, K.; Bhardwaj, A.; Gupta, N.; Lokanath, N.K.; Ghosh, A.; Reddy, V.S. and Ramakumar, S. Crystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp. NG-27: structural insights into alkalophilicity and implications for adaptation to polyextreme conditions. Protein Sci., 15, 1951-1960, 2006.
  • Shahi, P.; Kumar, I.; Sharma, R.; Sanger, S.; and Jolly, R.S. Characterization of a novel long-chain acyl-CoA thioesterase from Alcaligenes faecalis. FEBS J., 273, 2374-87, 2006.
  • Sharma, S.; Kulkarni, S.K.; Agrewala, J.N. and Chopra, K. Curcumin attenuates thermal hyperalgesia in a diabetic mouse model of neuropathic pain. Eur. J. Pharmacol., 536, 256-261, 2006.
  • Aggarwal, M. and Mondal, A.K. Role of N-terminal hydrophobic region in modulating the subcellular localization and enzyme activity of the bisphosphate nucleotidase from Debaryomyces hansenii. Eukaryot. Cell., 5, 262-271, 2006.
  • Thakur, M. and Chakraborti, P.K.GTPase activity of mycobacterial FtsZ is impaired due to its transphosphorylation by the eukaryotic type Ser/Thr kinase, PknA. J. Biol. Chem., 281, 40107-40113, 2006.
  • Singh, J.; Paul,D. and Jain, R.K.Biofilms: implications in bioremediation. Trends Microbiol., 14, 389-397, 2006.
  • Roychoudhuri, K.; Dasgupta, B.; Sen, Pradip; Laskay, T.; Solbach, W.; De, Tripti and Roy, SyamalEvidence of direct interactions between the CC-chemokines CCL3, CCL4 and CCL5 and Leishmania promastigotes. Mol. Biochem. Parasitol., 150, 374-377, 2006.
  • Pandey, G.; Pandey, J. and Jain, R.K.Monitoring Arthrobacter protophormiae RKJ100 in a .tag and chase. method during P- Nitrophenol bio-remediation in soil microcosms. Appl. Microbiol. Biotechnol., 70, 757-760, 2006.
  • Raghava, G.P.S. and Barton, G.J. Quantification of the variation in percentage identity for protein sequence alignments. BMC Bioinformatics, 7, 415, 2006.
  • Soni, P; Prasad, G.S. and Banerjee, U.C. Optimization of physicochemical parameters for the enhancement of carbonyl reductase production by Candida viswanathii. Bioprocess Biosyst. Eng., 29, 149-156, 2006.
  • Saha, P. and Chakrabarti, T. Emticicia oligotrophica gen nov., sp. nov., a new member of family .Flexibacteraceae., phylum Bacteroidetes. Int. J. Syst. Evol. Microbiol., 56, 991-995, 2006.
  • Saha, P. and Chakrabarti, T. Aeromonas sharmana sp.nov., isolated from a warm spring. Int. J. Syst. Evol. Microbiol., 56, 1905-1909, 2006.
  • Saha, P. and Chakrabarti, T. Flavobacterium indicum sp. nov., isolated from warm spring water in Assam, Insia. Int. J. Syst. Evol. Microbiol., 56, 2617-2621, 2006.
  • Soni, P.; Prasad, G.S. and Banerjee, U.C. Optimization of physicochemical parameters for the enhancement of carbonyl reductase production by Candida viswanathii. Bioprocess Biosyst. Eng., 29, 149-156, 2006.
  • Kaundal, Rakesh; Kapoor, A.S. and Raghava, G.P.S.Machine learning techniques in disease forecasting: a case study on rice blast prediction. BMC Bioinformatics,7, 485, 2006.
  • Gupta, S. ; Sinha, A. and Sarkar, D. Transcriptional autoregulation by Mycobacterium tuberculosis PhoP involves recognition of novel direct repeat sequences in the regulatory region of the promoter. FEBS Letters, 580, 5328-5338, 2006.
  • Swain, S.L.; Agrewala, J.N.; Browm, D.; Gibbs, D.J.; Golesh, S., Huston, G.; Jones, S.; Kamperschroer, C.; Lee, W.H.; McKinstry, K.; Roman, E.; Strutt, T. and Weng, N.P. CD4 memory: generation and multi-faceted role for CD4 T cells in protective immunity to influenza. Immunol. Rev., 211, 8-22, 2006.
  • Singh, V. and Agrewala, J. N. Regulatory role of pro-Th1 and pro-Th2 cytokines in modulating the activity of Th1 and Th2 cells when B cell and macrophages are used as antigen presenting cells. BMC Immunol., 7, 17, 2006.
  • Kaur, N.; Dhuna, V.; Kamboj, S.S.; Agrewala, J.N. and Singh, J. A. Novel antiproliferative and antifungal lectin from Amaranthus viridis linn seeds. Protein Peptide Lett., 13, 897-905, 2006.
  • Ahmad, N.; Deeba, F.; Faisal, S.M.; Khan, A.; Agrewala, J.N.; Dwivedi, V. and Owais, M. Role of fusogenic non-PC liposomes in elicitation of protective immune response against experimental murine salmonellosis. Biochimie., 88, 1391-1400, 2006.
  • Rampal, P.; Saini, H.S.; Mayilraj, S. Chimni, S.S. and Chadha, B.S. Enantiocomplementary reduction of 3-phenylthiopropan-2-one by Bacillus sp.: Effe ct of medium components. Bioresource Technology, 98, 725-728.
  • Mayilraj, S.; K. Suresh; Kroppenstedt, R.M. and Saini, H.S. Dietzia kunjamensis sp. nov., isolated from the Indian Himalayas. Int. J. Syst. Evol. Microbiol., 56, 1667-1671, 2006.
  • Mayilraj, S.; Saha, P., K. Suresh and Saini, H.S. Ornithinimicrobium kibberense sp. nov., isolated from the Indian Himalayas. Int. J. Syst. Evol. Microbiol., 56, 1657-1661, 2006.
  • K. Suresh; Mayilraj, S and Chakrabarti, T. Effluviibacter roseus gen. nov., sp. nov., isolated from muddy water, belonging to the family .Flexibacteraceae.. Int. J. Syst. Evol. Microbiol., 56, 1703-1707,2006.
  • Kim, J.K.; Raghava, G.P.S.; Bang, S. and Choi, S.Prediction of subcellular localization of proteins using pairwise sequence alignment and support vector machin. Pattern Recogn. Lett., 27, 996-1001, 2006.
  • Chandra,R.; Ghosh, A.; Jain, R.K. and Singh, S..Isolation and characterization of two potential pentachlorophenol degrading aero bic bacteria from pulp paper effluent sludge. J. Gen. Appl. Microbiol., 52, 125- 130, 2006.
  • Singh,O.V.; Ghai, S.; Paul, D. and Jain R.K.Genetically modified crops: success, safety assessment, and public concern. Appl Microbiol Biotechnol., 71, 598-607, 2006.
  • Wang, H.; Nicholas, M.W.; Conway, K.L.; Sen, Pradip; Diz, R.; Tisch, R.M. and Cl arke, S.H.EBV latent membrane protein 2A induces autoreactive B cell activation and TLR hy persensitivity. J. Immunol., 177, 2793-2802, 2006.
  • Paul, D.; Pandey, G.; Meier, C.; Meer, J.R. and Jain, R.K.Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation. FEMS Microbiol E col., 57, 116-27, 2006.
  • Patnaik, P.R.Dispersion optimization to enhance PHB production in fed-batch cultures of Ralstonia eutropha. Bioresource Tech., 97, 1994-2001, 2006.
  • Singh, S.; Kaur, G.; Chakraborti, A.K.; Jain, R.K. and Banerjee, U.C.Study of the experimental conditions for the lipase production by a newly isolated strain of Pseudomonas aeruginosa for the enantioselective hydrolysis of (ñ)methyl trans-3(4-methoxyphenyl) glycidate. Bioprocess Biosyst. Eng., 28, 341-348, 2006.
  • Saha, S. and Raghava, G.P.S.Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins: Structure, Function and Bioinformatics, 65, 40-48, 2006.
  • Sharma, P. and Mondal, A.K.Evidence that the MAPK-docking site in MAPKK Dpbs2p is essential for its function. Biochem. Biophy. Res. Comm., 346, 562-566, 2006.
  • Lama, A.; Pawaria, S. and Dikshit, K.L.Oxygen binding and NO scavenging properties of truncated hemoglobin, HbN, of Mycobacterium smegmatis. FEMS Letters, 580, 4031-4041, 2006.
  • Mayilraj, S.; Korpole, S.; Schumann, P.; Kroppenstedt, R.M. and Saini, H.S. Agrococcus lahaulensis sp. nov., a new member of the genus Agrococcus, isolated from a cold desert of the Himalayas, India. Int. J. Syst. Evol. Microbiol. 56, 1807-1810, 2006
  • Mayilraj, S.; Kroppenstedt, R.M.; Korpole, S. and Saini, H.S. Kocuria himachalensis sp. nov., a novel actinobacterium isolated from the Himalayas, India. Int. J. Syst. Evol. Microbiol. 56, 1971-1975, 2006
  • Ghosh, A.; Paul, D.; Prakash, D.; Mayilraj, S. and Jain R.K. Rhodococcus imtechensis sp. nov., a novel species isolated from pesticide contaminated soil. Int. J. Syst. Evol. Microbiol. 56, 1965-1969, 2006.
  • Patnaik P.R.Neural network configurations for filtering of feed stream noise from oscillating continuous microbial fermentations. Bioautomation, 4, 45-56, 2006.
  • Ha, S.W.; Tetsuo, A. and Kishore, R.Distinctive influence of two hexafluoro solvents on the structural stabilization of Bombyx mori silk fibroin protein and its derived peptides: 13C NMR and CD studies. Biomacromolecules, 7, 18-23, 2006.
  • Thakur, A.K. and Kishore, R.Characterization of b-turn and Asx-turn mimicry in a model peptide: Stabilization via C-H….O interaction. Biopolymers, 81, 440-449, 2006.
  • Saha, S and Raghava, G.P.S.AlgPred: Prediction of allergenic proteins and mapping of IgE Epitopes. Nucleic Acids Research, 34, W202-209, 2006.
  • Saha, S. and Raghava, G.P.S. VICMpred: SVM-based method for the prediction of the functional proteins of gram-negative bacteria using amino acid patterns and composition. Genomics Proteomics and Bioinformatics, 4, 42-47, 2006.
  • Kaur, H. and Raghava, G.P.S.Prediction of C∝-H...O and C∝-H...π interactions in proteins using recurrent neural network. In Silico Biol., 6, 11, 2006.
  • Basu,J.M.; Mookerjee, A; Sen, P.; Bhaumik, S.; Sen, Pradip; Banerjee, S.; Naskar, K.; Choudhuri, S.K.; Saha,B.; Raha,S. and Roy, S.Sodium antimony gluconate induces generation of reactive oxygen species and nitric oxide via phosphoinositide 3-kinase and mitogen-activated protein kinase activation in Leishmania donovani-Infected mcrophages. Antimicrob Agents Chemotherapy, 50, 1788-97, 2006.
  • Mayilraj, S.; Krishnamurthi, S.; Saha, P. and Saini, H.S.Kitasatospora sampliensis sp. nov., a novel actinobacterium isolated from soil of a sugar-cane field in India. Int J Syst Evol Microbiol., 56, 519-522, 2006.
  • Mayilraj, S.; Krishnamurthi, S.; Saha, P. and Saini, H.S.Rhodococcus kroppenstedtii sp. nov., a novel actinobacterium isolated from a cold desert of the Himalayas, India. Int J Syst Evol Microbiol., 56, 979-982, 2006.
  • Sonavane, V.C.Enzymatic modifications of cephalosporins by cephalosporin acylase and other enzymes. Crit. Rev. Biotechnol., 26, 1-26, 2006.
  • Raychaudhuri, S.; Jain, V. and Donger, M.Identification of a constitutively active variant of LuxO that affects production of HA/protease and biofilm development in a non-O1, non-O139 Vibrio cholerae O110. Gene, 369, 126-133, 2006.
  • Mehta, R.K. and Singh, J.A truncated derivative of nmt1 promoter exhibits temperature-dependent induction of gene expression in Schizosaccharomyces pombe. Yeast, 23, 55-65, 2006.
  • Kumar, M.; Verma, R. and Raghava, G.P.S.Prediction of mitochondrial proteins using support vector machine and hidden markov model. J. Biol. Chem., 281, 5357-5363, 2006.
  • Singh, M.K.; Srivastava, S.; Raghava, G.P.S. and Varshney, G.C.HaptenDB: A comprehensive database of haptens, carrier proteins and anti- hapten antibodies. Bioinformatics, 22, 253-255, 2006.
  • Au, T.K.; Agrawal, P. and Harshey, R. M.Chromosomal integration mechanism of infecting Mu virion DNA. J. Bacteriol., 188, 1829-1834, 2006.
  • Patnaik, P.R.Synthesizing cellular intelligence and artificial intelligence for bioprocesses. Biotech. Adv., 24, 129-133, 2006.
  • Patnaik, P.R.Hybrid filtering to rescue stable oscillations from noise-induced chaos in continuous of budding yeast. FEMS Yeast Res., 6, 129-138, 2006.
  • Biswas, K. and Prasad.G.S. Molecular methods for characterization of yeasts associated with fermented foods and beverages. In: Frontiers in Plant Sciences. (Ed. Mukherjee, K.G. et al..) I.K. International Publishing House, New Delhi, India. 355-372
  • G.S.Prasad. Sequence analysis of internal transcribed spacer regionfor phylogenetic assessment of ascomycetous yeasts. In: Microbial Diversity: Current Perspectives and Potential Applications. (Ed. Satyanarayana.T. and Johri.B.N.) I.K. International Publishing House, New Delhi, India. 149-164.

2005

  • Singla, A.K.;Mayilraj, S.; Kudo Takuji; Krishnamurthi, S.; Prasad, G.S. and Vohra, R.M.Actinoalloteichus spitiensis sp. nov., a novel actinobacterium isolated from a cold desert of the Indian Himalayas. Int J Syst Evol Microbial, 55, 2561-2564, 2005.
  • Saha, S., Bhasin, M and Raghava, G.P.S (2005)Bcipep: A database of b-cell epitope. BMC Genomics, 6(1): 79.
  • Deshpande, A.; Nimsadkar, S. and Mande S.C.Effect of alcohols on protein hydration - crystallographic analysis of hen egg-white lysozyme in the presence of alcohols. Acta Crystallographica d-biological crystallography, 61, 1005-1008, 2005.
  • Vats, P.; Bhattacharyya, M.S. and Banerjee,U.C.Use of phytases (myo-inositolhexakisphosphate phosphohydrolases) for combating environmental-pollution - a biological approach. Crit. Rev. Env. Sci. Technol., 35, 469-486, 2005.
  • Rai, H.S.; Bhattacharyya,M.S.; Singh,J.; Bansal,T.K.; Vats,P. and Banerjee,U.C.Removal of dyes from the effluent of textile and dyestuff manufacturing-industry - a review of emerging techniques with reference to biological treatment. Crit. Rev. Env. Sci. Technol., 35, 219-238, 2005.
  • Baghel, V.S.; Tripathi, R.D.; Ramteke, P.W.; Gopal, K.; Dwivedi, S.; Jain, R.K. Rai,U.N. and Singh, S.N.Psychrotrophic proteolytic bacteria from cold environment of gangotri glacier, western himalaya, India. Enz. Microbial Technol., 36, 654-659, 2005.
  • Bhasin, M. and Raghava, G.P.S. MHCBN: A comprehensive database of MHC/TAP binders/non-binders and T-cell epitopes. Nucleic Acids Res. (online; http://www3.oup.co.uk/nar/database/summary/702) 2005.
  • Singh, M.K.; Srivastava, S.; Raghava, G.P.S. and Varshney, G.C. HaptenDB: A database of hapten molecules. Nucleic Acids Res. (online; http://www3.oup.co.uk/nar/database/summary/682) 2005.
  • Shivaji, S.; Reddy, G.S.N.; Suresh, K.; Gupta, P.; Chintalapati, S.; Schumann, P.; Stackebrandt, E. and Matsumoto, G.I. Psychrobacter vallis sp. nov. and Psychrobacter aquaticus sp. nov. from Antarctica. Int. J. Syst. Evol. Microbiol, 55, 757-762, 2005.
  • Shivaji, S.; Chaturvedi, P.; Reddy, G.S.N. and Suresh, K. Pedobacater himalayenisis sp. nov., from Hamta glacier located in the Himalayan mountain ranges of India. Int. J. Syst. Evol. Microbiol, 55, 1053-1088, 2005.
  • Kroppestedt, R. and Mayilraj Eight new species of the genus Micromonosproa, M. cirea sp. nov. M. echinaurantica sp. nov. M. echinofusca sp. nov., M. fulviviridis sp. nov., M. inyonensis sp.nov., M.peucltica sp. nov., M.sagamiensis sp. nov., and M. viridifaciens sp. nov. syst. Appl. Microbiol, 28, 328-339, 2005.
  • Saxena, R. and Chakraborti, P.K. The carboxy-terminal end of the peptide deformylase from Mycobacterium tuberculosis is indispensable for its enzymatic activity. Biochem. Biophys. Res. Commun., 332, 418-425, 2005.
  • Patnaik, P. R. Application of the lyapunov exponent to detect noise-induced chaos in oscillating microbial cultures. Chaos Solitons Fractals, 26, 759-765, 2005.
  • Labana, S.; Singh, O.V.; Basu, A.; Pandey, G. and Jain, R.K. A microcosm study on bioremediation of p-nitrophenol contaminated soil using Arthrobacter protophormiae RKJ100. Appl. Microbiol. Biotechnol.,68, 417-424, 2005.
  • Garg, A.; Kaur. H. and Raghava, G.P.S. Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure. Proteins: Structure, Function and Bioinformatics, 61, 318-324, 2005.
  • Saxena, R. and Chakraborti, P.K. Identification of regions involved in enzymatic stability of peptide deformylase of Mycobacterium tuberculosis. J. Bacteriol., 187, 8216-8220, 2005.
  • Patnaik, P.R.Perspectives in the modeling and optimization of PHB production by pure and mixed cultures. Critical Reviews in Biotechnology, 25, 153-171, 2005.
  • Sahoo, D.K. and Gupta, R. Evaluation of ligninolytic microorganisms for efficient decolorization of a small pulp and paper mill effluent. Process Biochem, 40, 1573-1578, 2005.
  • Bhasin, M. and Raghava, G.P.S.Pclavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences. Nucleic Acids Res., 33, W202-7, 2005.
  • Kumar, M.; Bhasin, M.; Natt, N.K. and Raghava, G.P.S.BhairPred: Prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques. Nucleic Acids Res., 33, W154-9, 2005.
  • Asakura, T.; Ohgo, K.; Ishida, T.; Taddei, P.; Monti, P. and Kishore, R.Possible implications of serine and tyrosine residues and intermolecular interactions on the appearance of silk I structure of Bombyx mori silk fibroin-derived synthetic peptides: high resolution 13C cross-polarization/magic-angle spinning NMR study. Biomacromolecules, 6, 468-474, 2005.
  • Patnaik, P.R.Who wants biochemical engineers. Curr. Science, 88, 1019-1019, 2005.
  • Vats, P. and Baneerjee, U.C.Biochemical characterisation of extracellular phytase (myo-inositol hexakisphosphate phosphohydrolase) from a hyper-producing strain of Aspergillus niger van Teighem. J Ind Microbiol Biotechnol, 32, 141-147, 2005.
  • Shafiani, S.; Sharma, P.; Vohra, R.M. and Tiwari, R.Cloning and characterisation of aspartate-beta-semialdehyde dehydrogenase from Mycobacterium tuberculosis H37 Rv. J Appl Microbiol, 98, 832-838, 2005.
  • Sharma, P.; Meena, N.; Aggarwal, M. and Mondal, A.K.Debaryomyces hansenii, a highly osmo-tolerant and halo-tolerant yeast, maintains activated Dhog 1p in the cytoplasm during its growth under severe osmotic stress.Curr. Genet., Aug. 10, 1-9, 2005.
  • Saha, S.; Bhasin, M. and Raghava, G.P.S. BCIpep: A database of B-cell epitopes. Nucleic Acids Res. (online; http://www3.oup.co.uk/nar/database/summary/642), 6(1), 79, 2005.
  • Bhasin, M. and Raghava, G.P.S. GPCRsclass: A web tool for classification of amine type of G-protein coupled receptors. Nucleic Acids Res., 33, W143-7, 2005.
  • Saha, P.; Krishnamurthi, S.; Mayilraj, S.; Prasad, G.S. and Chakrabarti, T. Aquimonas voraii gen. nov., sp. nov., a new gamma proteobacterium isolated from a warm spring of Assam, India. Int. J. Syst. Evol. Microbiol., 55, 1491-5, 2005.
  • Gupta, S.; Chakraborti, P.K. and Sarkar, D. Nucleotide induced conformational change in the catalytic subunit of the phosphate specific transporter from M. tuberculosis: Implications for the ATPase structure. Biochem. Biophys. Acta, 1750, 112-121, 2005.
  • Labana, S.; Pandey. G.; Paul, D.; Basu, A. and Jain, R.K. Pot and field studies on bioremediation of p-nitrophenol contaminated soil using Arthrobacter protophormiae RKJ100. Environ. Sci. Technol., 39, 3330-7, 2005.
  • Srikanth, C.V.; Vats, P.; Bourbouloux, A.; Delrot, S. and Bachhawat, A.K. Multiple cis-regulatory elements and the yeast sulphur regulatory network are required for the regulation of the yeast glutathione transporter, Hgt1p. Curr. Genet., 47, 345-58, 2005.
  • Ganduri, V.S.R.K.; Ghosh, S. and Patnaik, P. R. Optimal mixing to improve the performance of batch and continuous fermentations with recombinant Escherichia coli. J. Chem. Technol. Biotechnol., 80, 361-370, 2005.
  • Patnaik, P. R. The external kalman filter as a noise modulator for continuous yeast cultures under monotonic, oscillating and chaotic conditions. Chem. Engg. J., 108 , 361-370, 2005.
  • Praveen Kumar; Verma, A.; Saini, A.K.; Chopra, P.; Chakraborti, P.K.; Singh, Y. and Chowdhury, S. Nucleoside diphosphate kinase from Mycobacterium tuberculosis cleaves single strand DNA within the human c-myc promoter in an enzyme-catalyzed reaction. Nucleic Acids Research, 33, 2707-14, 2005.
  • Bhasin, M.; Garg, A. and Raghava, G.P.S. PSLpred: Prediction of subcellular localization of bacterial proteins, Bioinformatics, 21, 2522-4, 2005.
  • Johri B.N., Ganguly B.N., Goel S.K., Virdi J.S., Tripathi A.K., Jain R.K., Kamra D.N. and Bhatnagar A.Microorganism diversity: Strategy and action plan. Current Science, 89, 151-154, 2005.
  • Jain, R.K.; Kapur, M., Labana, S.; Lal, B., Sarma, P.M., Bhattacharya, D. and Thakur, I.S.Microbial Diversity: Application on micro-organisms for the biodegradation of xenobiotics. Current Science, 89, 101-112, 2005.
  • Brains, J.S.; Dhuna, V.; Singh, J.; Kamboj, S.S.; Nijjar, K.K. and Agrewala, J.N.Novel lectins from rhizomes of two Acorus species with mitogenic activity and inhibitory potential towards murine cancer cell lines. Int Immunopharmacol, 9, 1470-8, 2005.
  • Brains, J.S.; Singh, J.; Kamboj, S.S.; Nijjar, K.K.; Agrewala, J.N.; Kumar, V.; Kumar, A. and Saxena, A.K.Mitogenic and anti-proliferative activity of a lectin from the tubers of Voodoo lily (Sauromatum Venosum). Biochim Biophys acta, 1723, 163-74, 2005.
  • Patnaik, P.R.Process analysis in a disturbed environment during oscillatory metabolism of Saccharomyces cerevisiaeInd. J. Biotechnol., 80, 361-370, 2005.
  • Sonawane, V.C.A mini-scale method for assay of D-amino acid oxidase activity in Trigonopsis variabilis against cephalosporin C.Biocatalysis Biotransformation, 23, 1-5, 2005.
  • Paul, D.; Pandey, G.; Pandey, J. and Jain, R.K. Accessing microbial diversity for bioremediation and environmental restoration. Trends Biotechnol., 23, 135-42, 2005.
  • Labana, Sumeet; Pandy, G. and Jain, R.K. Desulfurization of dibenzothiophene and diesel oils by bacteria. Lett. Appl. Microbiol., 40, 159-63, 2005.
  • Paul, D.; Pandey, G. and Jain, R.K. Suicidal of genetically engineered microorganisms for bioremediation: Need and perspective. Bioessays, 27, 563-73, 2005.
  • Dahiya, M.; Rajamohan, G. and Dikshit, K.L. Enhanced plasminogen activation by staphylokinase in the presence of streptokinase b-/bg domains: Plasminogen kringles play a role. FEBS Lett., 579, 1565-72, 2005.
  • Garg, A.; Bhasin, M. and Raghava, G.P.S. SVM-based method for subcellular localization of human proteins using amino acid compositions, their order and similarity search J. Biol. Chem., 280, 14427-32, 2005.
  • Pimenta, R.S.; Alves, P.D.D.; Correa, A. Jr.; Lachance, M.A., Prasad, G.S.; Rajaram, B.R.; Sinha, R.P. and Rosa, C.A. Geotrichum silvicola sp. nov., a novel asexual arthroconidial yeast species related to the genus Galactomyces. Int. J. Syst. Evol. Microbiol., 55, 497-501, 2005.
  • Pandey. G.; Paul, D. and Jain, R.K. Conceptualizing “suicidal genetically engineered microorganisms” for bioremediation applications. Biochem. Biophys. Res. Commun., 327, 637-9, 2005).
  • Mayilraj, S.; Prasad, G.S.; Suresh, K.; Saini, S.H.; Shivaji, S. and Chakrabarti, T. Planococcus stackebrandtii sp. nov.; isolated from a cold desert of the Himalayas, India. Int. J. Syst. Evol. Microbiol., 55, 91-94, 2005.
  • Prasad, G.S.; Mayilraj, S.; Sood, N.; Singh, V.; Biswas, K. and Lal, B. Candida digboiensis sp. nov., a novel anamorphic yeast species from an acidic tar sludge-contaminated oilfield. Int. J. Syst. Evol. Microbiol., 55, 967-972, 2005.
  • Prabagaran, S.R.; Suresh, K.; Manorama, R.; Delille, D. and Shivaji, S. Marinomonas ushuaiensis sp. nov., isolated from coastal sea water in Ushuaia, Argentina, sub-Antarctica. Int. J. Syst. Evol. Microbiol., 55, 309-313, 2005.
  • Radha Kishan, K.V.; Vohra, R.M.; Ganesan, K.; Agrawal, V.; Sharma, V.M. and Sharma, R. Molecular structure of D-hydantoinase from Bacillus sp. AR9: Evidence for mercury inhibition. J. Mol. Biol., 347, 95-105, 2005.
  • Srikanth, C.V.; Chakraborti, A.K. and Bachhawat, A.K. Acetaminophen toxicity and resistance in the yeast Saccharomyces cerevisiae. Microbiology, 151, 99-111, 2005.
  • Ganduri, V.S.R.K.; Ghosh, S. and Patnaik, P. R. Mixing control as a device to increase PHB production in batch fermentations with co-cultures of L. delbrueckii and R. eutropha. Process Biochem, 40, 257-264, 2005.
  • Verma, S.; Patel, S.; Kaur, R.; Stark, B.C.; Dikshit, K.L. and Webster, D.A. Mutational study of the bacterial hemoglobin distal heme pocket. Biochem. Biophys. Res. Commun., 326, 290-7, 2005.
  • Sharma, P. and Mondal, A.K. Evidence that C-terminal non-kinase domain of Pbs2p has a role in high osmolarity-induced nuclear localization of Hog1p. Biochem. Biophys. Res. Commun., 328, 906-13, 2005.
  • Aggarwal, M.; Bansal, P.K. and Mondal, A.K. Molecular cloning and biochemical characterization of a 3Â’(2Â’),5Â’-bisphosphate nucleotidase from Debaryomyces hansenii. Yeast, 22, 457-470, 2005.
  • Raghava, G.P.S. and Han, J.H. Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein. BMC Bioinformatics, 6, 59, 2005.
  • Patnaik, P.R. Neural network designs for poly-beta-hydroxybutyrate production optimization under simulated industrial conditions. Biotechnol. Lett., 27, 409-15, 2005.
  • Mukherjee, S. and Guptasarma, P. Direct proteolysis-based purification of an overexpressed hyperthermophile protein from Escherichia coli lysate: A novel exploitation of the link between structural stability and proteolytic resistance. Protein Expr. Purif., 40, 71-6, 2005.
  • Kishan, K.V. and Agrawal, V. SH3-like fold proteins are structurally conserved and functionally divergent. Curr. Protein Pept. Sci., 6, 143-50. 2005.
  • Ghosh AmitExploiting Microbial Diversity in Biodiversity: Status and Prospects. Ed. Tandon, P.; Sharma, M. and Swarup, R. Narosa Publishing House, New Delhi, 2005.
  • Ghosh AmitEmergence and Reemergence of Infectious Diseases: The Cholera Paradigm, in Glimpses of the work on Environment and Development in India (ed. Singh, J.S. and Sharma, V.P.), Angkor Publishers Pvt. Ltd., Noida, pp. 273-291, 2005.
  • Nandanwar, H.; Hoondal, G.S. and Vohra, R.M. Enzymatic production of D-amino acids. Chapter 5, pp. 91-104, Series: Methods in Biotechnology, volume 17, Humana Press, USA.

2004

  • Saha, S., and Raghava, G.P.S. BcePred: Prediction of Continous b-cell Epitopes in Antigenic Sequences using Physico-chemical Properties. In G. Nicosia, V. Cutello; P.J. Bentley and J. Bentley and J.Tinis(Eds). ICARIS 2004, 2NCS 3239, 197-204, Springer,2004.
  • Issac, B. and Raghava, G.P.S.EGPred: Prediction of eukaryotic genes using ab initio methods after combining with sequence similarity approaches. Genome Research, 14, 1756-66, 2004.
  • Bhasin, M., and Raghava, G.P.S. ESLpred: SVM Based Method for Subcellular Localization of Eukaryotic Protein s using Dipeptide Composition and PSI-BLAST. Nucleic Acids Research, 32, 414-9, 2004.
  • Bhasin, M., and Raghava, G.P.S. GPCRpred: An SVM based method for prediction of families and subfamilies of G-protein coupled receptors. Nucleic Acids Research, 32, W383-9, 2004.
  • Kaur, H. and Raghava, G. P.S. Prediction of b-turns in proteins using PSI-BLAST profiles and secondary structure information. Proteins, 55, 83-90, 2004.
  • Bhasin, M. and Raghava, G.P.S. SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence. Bioinformatics, 12, 421-3, 2004.
  • Tiwari, Sangeeta; Radha Kishan, K.V.; Chakrabarti, T. and Chakraborti, P.K. Amino acid residues involved in autophosphorylation and phosphotransfer activities are distinct in nucleoside diphosphate kinase from Mycobacterium tuberculosis. J. Biol. Chem., 279, 43595-43603, 2004.
  • Bhasin, M. and Raghava, G.P.S. Classification of nuclear receptors based on amino acid composition and dipeptide composition. J. Biol. Chem., 279, 23262-6, 2004.
  • Bhasin, M. and Raghava, G.P.S. Analysis and prediction of affinity of TAP binding peptides using Cascade SVM. Protein Science, 13, 596-607, 2004.
  • Sharma, D.; Issac, B.; Raghava, G.P.S. and Ramaswamy, R. Spectral Repeat Finder (SRF): Identificatgion of repetitive sequences using fourier transformation. Bioinformatics, 20, 1405-1412, 2004.
  • Natt, N.K.; Kaur, H. and Raghava, G.P.S. Prediction of transmembrane regions of beta-barrel proteins using ANN and SVM based method. Proteins: Structure, Function and Bioinformatics, 56, 11-8, 2004.
  • Vats, P. and Banerjee, U.C. Production studies and catalytic-properties of phytases (myo-inositolhexakisphosphate phosphohydrolases)- An overview. Enzyme Microbial. Technol., 35, 3-14, 2004.
  • Bhasin, M. and Raghava, G.P.S. Prediction of CTL epitopes using QM, SVM and ANN techniques. Vaccine, 22, 3195-204, 2004.
  • Kaur, H. and Raghava, G.P.S. Role of evolutionary information in prediction of aromatic-backbone NH interactions in proteins. FEBS letters, 564, 47-57, 2004.
  • Singh, Pooja and Cameotra, Swaranjit Singh. Potential applications of microbial surfactants in biomedical sciences. Trends Biotechnol., 22, 142-146, 2004.
  • Sharma, N. and Agrewala, J.N. Potent role of the vaccines prepared from macrophages infected with live bacteria in protection against M. tuberculosis and S. typhimurium infections. J. Infect. Dis., 190, 107-114, 2004.
  • Bhadbhade, M.M. and Kishore, R. An observation of non-superimposible stereogeometrical features in non-chiral one-component b-Ala model peptide. Biochem. Biophys. Res. Commun., 316, 1029-1036, 2004.
  • Shukla, A. and Guptasarma, P. Folding of b/a-unit scrambled forms of S. cerevisiae triosephosphate isomerase: Evidence for autonomy of substructure formation and plasticity of hydrophobic and hydrogen bonding interactions in core of (b/a)8-barrel. Proteins, 55, 548-557, 2004.
  • Singh, Pooja; Suri, C.R. and Cameotra, Swaranjit Singh. Isolation and characterization of a bacterial strain capable of degrading atrazine. Biochem. Biophys. Res. Commun., 317, 697-702, 2004.
  • Kundu, B.; Shukla, A.; Chaba, R. and Guptasarma, P. The excised heat-shock domain of alpha-B crystallin is a folded, proteolytically susceptible trimer with significant surface hydrophobicity and a tendency to self-aggregate upon heating. Protein Expr. Purif., 36, 263-271, 2004.
  • Singh, K.V.S.; Kaur, J.; Varshney, G.C.; Raje, M. and Suri, C.R. Synthesis and characterisation of hapten-protein conjugates for antibody production against small molecules. Bioconjugate Chem., 15, 168-73, 2004.
  • Kaur, J.; Singh, K.V.; Raje, M.; Varshney, G.C. and Suri, C.R. Strategies for direct attachment of hapten to a polystyrene support for applications in enzyme-linked immunosorbent assay (ELISA). Analytica Chimica Acta, 506, 133-135, 2004.
  • Kaur, J.; Singh, K.V.S.; Schmid, A.H.; Varshney, G.C.; Suri, C.R. and Raje, M. Atomic force spectroscopy-based study of antibody pesticide interactions for characterisation of immunosensor surface. Biosensors Bioelectronics, 20, 284-293, 2004.
  • Moniaux, N.; Varshney, G.C.; Chauhan, S.C.; Copin, M.C.; Jain, M.; Wittel, U.A.; Andrianifahanana, M.; Aubert, Jean-Pierre and Batra, S.K. Generation and characterisation of anti-MUC4 monoclonal antibodies reactive with normal and cancer cells in humans. J. Histochem. Cytochem., 52, 253-261, 2004.
  • Shukla, A.; Mukherjee, S.; Sharma, S.; Agrawal, V.; Radha Kishan K.V. and Guptasarma, P. A novel UV laser-induced visible blue radiation from protein crystals and aggregates: Scattering artifacts or fluorescence transitions of peptide electrons delocalized through hydrogen bonding? Archives Biochem. Biophys., 428, 144-153, 2004.
  • Kaur, H. and Raghava, G.P.S. A neural network method for prediction of beta-turn types in proteins using evolutionary information. Bioinformatics, 20, 2751-8, 2004.
  • Singh, Pooja and Cameotra, Swaranjit Singh. Enhancement of metal bioremediation by use of microbial surfactants. Biochem. Biophys. Res. Commun., 319, 291-297, 2004.
  • Cameotra, Swaranjit Singh and Makkar, R.S. Recent applications of biosurfactants as biological and immunological molecules. Current Opinion Microbiol., 7, 262-266, 2004.
  • Patnaik, P.R. Influence of fluid mixing on oscillations in recombinant fermentations with variable plasmid loss. A preliminary study. React. Kinet. Catal. Lett., 83, 261-268, 2004.
  • Patnaik, P.R. Neural and hybrid neural modelling and control of fed-batch fermentation for streptokinase: Comparative evaluation under nonideal conditions. Can. J. Chem. Engng., 82, 599-607, 2004.
  • Patnaik, P.R. A lyapunov comparison of noise-filtering methods for oscillating yeast cultures. A. I. Ch. E. J., 50, 1640-1646, 2004.
  • Patnaik, P.R. How effective is the extended kalman filter for continuous yeast cultures affected by both inflow and measurement noise?. Current Sci., 86, 999-1007, 2004.
  • Sutar, R.; Joseph K. David; Ganesan, K.; Ghosh, A.K.; Singhi, S.; Chakrabarti, A. and Bachhawat, A.K. Comparison of ITS and IGS1 region for strain typing of clinical and non-clinical isolates of Pichia anomala. J. Med. Microbial., 53, 119-23, 2004.
  • Kohli, D.; Srikanth, C.V. and Bachhawat, A.K. A search tool for identification and analysis of conserved sequence patterns in Saccharomyces sp. orthologous promoters. In Silico Biology, 3, 34, 2004.
  • Zhang, M.Y.; Bourbouloux, A.; Cagnac, O.; Srikanth, C.V.; Rentsch, D.; Bachhawat, A.K. and Delrot, S. A novel family of transporters mediating the transport of glutathione derivatives in plants. Plant Physiology, 134, 482-91, 2004.
  • Taneja, V.; Paul, S. and Ganesan, K. Directional ligation of long-flanking homology regions to selection cassettes for efficient targeted gene-disruption in Candida albicans. FEMS Yeast Res., 4, 841-847, 2004.
  • Singh, Jasvir; Vohra, R.M. and Sahoo, D.K. Enhanced production of alkaline proteases by Bacillus sphaericus using fed-batch culture. Process Biochem., 39, 1093-1101, 2004.
  • Kaul, P.; Banerjee, A.; Mayilraj, S. and Banerjee, U.C. Screening for enantioselective nitrilases: Kinetic resolution of racemic mandelonitrile to R-(-) mandelic acid by new bacterial isolates. Tetrahedron: A symmetry, 15, 207-211, 2004.
  • Vats, P.; Sahoo, D.K. and Banerjee, U.C. Studies on the production of phytases (myoinositolhexakisphosphate phosphohydrolases) by Aspergillus niger van teigham in laboratory fermenter. Biotechnology Progress, 20, 737-743, 2004.
  • Paul, D.; Chauhan, A.; Pandey, G. and Jain, R.K. Pathway for the degradation of p-hydroxybenzoate in Arthrobacter protophormiae RKJ100 and Burkholderia cepacia RKJ200. Current Science, 87, 1263-1268, 2004.
  • Kapur, M. and Jain, R.K. Microbial diversity: Exploring the unexplored. World Federation of Culture Collection (WFCC) Newsletter, 39, 12-16, 2004.
  • Jain, R.K. Bioremediation of pesticide contaminated soils and its effect on soil functionality. Indian Network for Soil Contaminated Research (INSCR) Newsletter, 4, 1-3, 2004.
  • Rani, S.; Swarupa, I.; Kunwar, K.; Prasad, G.S. and Manoharachary, C. Glomus hyderabadensis, a new species: Its taxonomy and phylogenetic comparison with related species. Mycotaxon, 89, 245-253, 2004.
  • Kishore, R.b-Ala containing peptides: Potentials in design and construction of bioactive peptides and protein secondary structure mimics. Current Protein Peptide Sciences, 5, 435-455, 2004.
  • Kumar, R. and Singh, J. Expression and secretion of a prokaryotic protein streptokinase without glycosylation and degradation in Schizosaccharomyces pombe. Yeast, 21, 1343-58, 2004.
  • Yao, Juming; Ohgo, K.; Sugino, R.; Kishore, R. and Asakura, T. Structural analysis of Bombyx mori silk fibroin peptides with formic acid treatment using high-resolution solid-state 13C NMR strectroscopy. Biomacromolecules, 5, 1763-1769, 2004.
  • Dash, P.K.; Parida, M.M.; Saxena, P.; Kumar Manoj; Rai, A.; Pasha, S.T. and Jana, A.M. Emergence and continued circulation of dengue-2 (genotype IV) virus strains in northern India. J. Med. Virol., 74, 314-322, 2004.
  • Kumar Manoj; Pasha, S.T.; Mittal, V.; Rawat, D.S.; Arya, S.C.; Agarwal, N.; Bhattacharya, D.; Shiv Lal and Rai, A. Unusual emergence of guate98-like molecular subtype of DEN-3 during 2003 dengue outbreak in Delhi. Dengue Bulletins, 28, 161-167, 2004.
  • Suresh, K.; Reddy, G.S.N.; Sengupta, S. and Shivaji, S. An arsenic resistance bacteria Deinococcus sp. nov., indicus from an aquifer from West Bengal. Int. J. Syst. Evol. Microbiol., 54, 457-461, 2004.
  • Suresh, K.; Prabagaran, S.R.; Sengupta, S. and Shivaji, S. An arsenic resistance bacteria Bacillus indicus sp. nov., from an aquifer from West Bengal. Int. J. Syst. Evol. Microbiol., 54, 1369-1375, 2004.
  • Singh, B. PepBuild: A web server for building structure data of peptides / proteins. Nucleic Acid Research, 32, 559-561, 2004.
  • Luthra-Guptasarma, M. and Singh, B. HLA-B27 lacking associated beta2-microglobulin rearranges to auto-display or cross-display residues 169-181: A novel molecular mechanism for spondyloarthropathies. FEBS Lett., 575, 1-8, 2004.
  • Pathania, R.; Rajamohan, G. and Dikshit, K.L. Novel hemoglobis of M. Tuberculosis : Role in pathogenicity and cellular metabolism. In “Deep Roots Open Skies: New Biology in India” Eds Basu, S.K., Batra, K.K. and Salunake, D.M., pp. 163-166, 2004.
  • Ghosh AmitClass I Integrons, SXT Elements, gyrA mutations and plasmid carriage in antibiotic resistance starins of V. fluvialis, isolated in Calcutta. (Virk, R. and Srinivasan, V.) Proceedings of the 40th Anniversary Meeting of the US-Japan Co-op Medical Sciences programme, Kyoto, Japan, 2004.
  • Issac, B. and Raghava, G.P.S. FASTA servers for sequence similarity search. Proteomics Handbook, edited by John N. Walker and published by Humana press, 2004.

2003

  • Patnaik, P.R.On the performances of noise filters in the restoration of oscillatory behaviour in continuous yeast cultures. Biotech. Lett., 25, 681-685, 2003.
  • Warren, D.; Sam, M.D.; Manley, K.; Sarkar, D.; Lee, S.Y.; Abbani, M.; Wojciak, J.M.; Clubb, R.T. and Landy, A.Identification of the lamdba integrase surface that interacts with Xis reveals a residue that is also critical for Int dimer formation. Proc. Natl. Acad. Sci., 100, 8176, 8181, 2003.
  • Shishodia, S.; Majumdar, S.; Banerjee, S. and Aggarwal, B.B. Ursolic acid inhibits nuclear factor-kB activation induced by carcinogenic agents through suppression of IkBa kinase and p65 phosphorylation: Correlation with down-regulation of cyclooxygenase 2, matrix metalloproteinase 9, and cyclin D1. Cancer Research, 63, 4375-4381, 2003.
  • Kohli, D.K. and Bachhawat, A.K.CLOURE: Clustal Output Reformatter, a program for reformatting Clustal X/ Clustal W outputs for SNP analysis and molecular systematics. Nucleic Acids Research, 31, 3501, 2003.
  • Bhasin, M.; Singh, H. and Raghava, G.P.S.MHCBN: A comprehensive database of MHC binding and non-binding peptide. Bioinformatics, 19, 665, 2003.
  • Naresh Alpana; Saini Sharanjot & Singh JagmohanIdentification of Uhp1, a ubiquitinated histone-like protein, as a target / mediator of Rhp6 in mating-type silencing in fission yeast. J. Biol. Chem., 278, 9185-9194, 2003.
  • Shukla, A.; Raje, M. & Guptasarma, P. A backbone-reversed form of an all-beta alpha-crystallin domain from a small heat-shock protein (retro-sHSP12.6) folds and assembles into structured multimers. J. Biol. Chem., 278, 26505-26510, 2003.
  • Vasudha Sundram; Jagpreet S. Nanda; K. Rajagopal; Jayeeta Dhar; Anita Chaudhary and Girish Sahni.Domain truncation studies reveal that the Streptokinase-Plasmin activator complex utilizes long-range protein-protein Interactions with macromolecular substrate to maximize catalytic turn-over. J. Biol. Chem., 278, 30569, 2003.
  • Gullion, T.; Kishore, R. & Asakura, T.Determination of dihedral angles and local structural in peptides by 13C-2H REDOR. J. Am. Chem. Soc., 125, 7510-7511, 2003.
  • Majumdar Sekhar and Aggarwal, B.B. Adenosine suppresses activation of nuclear factor-kB selectively induced by tumor necrosis factor in different cell types. Oncogene, 22, 1206-1218, 2003.
  • Sahni, GirishNewer products from old proteins: the case of streptokinase. Med. Chem. Res., 12, 189, 2003.
  • Amita; Chowdhury, Soumya Roy; M. Thungapathra; Ramamurthy, T.; Balakrish Nair, G. & Ghosh Amit.Distribution of class I integrons and SXT elements in Vibrio cholerae 01 EI Tor strains isolated in Calcutta, India, before and after the Vibrio cholerae 0139 outbreak. Emerging Infectious Diseases, 9, 500-502, 2003.
  • Singh, H. and Raghava, G.P.S. ProPred1: Prediction of promiscuous MHC class-I binding sites. Bioinformatics, 19, 1009-14, 2003.
  • Agarwal, M.; Sahi, C.; Katiyar-Agarwal, S.; Agarwal, S.; Young, T.; Gallie, D.R.; Sharma, V.M.; Ganesan, K. & Grover, A. Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types. Plant Mol. Biol., 51, 543-53, 2003.
  • Kaur, H. & Raghava, G.P.S.Prediction of b-turns in proteins from multiple alignment using neural network. Protein Science, 12, 627-634, 2003.
  • Sarin, J.; Raghava, G.P.S. & Chakraborti, P.K.Intrinsic contributions of polar amino acid residues towards thermal stability of an ABC-ATPase of mesophilic origin. Protein Science, 12, 2118-2120, 2003.
  • Kaur, H. & Raghava, G.P.S.A neural-network based method for prediction ofg-turns in proteins from multiple sequence alignment. Protein Science, 12, 923-929, 2003
  • Shukla, A.; Raje, M. & Guptasarma, P.A backbone-reversed all-beta polypeptide (retro-CspA) folds and assembles into amyloid nanofibres. Protein Engg., 16, 875-879, 2003.
  • Chakrabarti, A.; Ghosh, A.; Prasad, G.S.; David J.K.; Gupta, S.; Das, A.; Sakhuja, V.; Panda, N.K.; Singh, S.K.; Das S. and Chakrabarti, T.Apophysomyces elegans: An emerging zygomycete in India. J. Clin. Microbiol., 41, 783-788, 2003.
  • Kumar, C.; Sharma, R. and Bachhawat, A.K. Investigations into the polymorphisms at the ECM38 locus of two widely used S.cerevisiae S288C strains, YPH499 and BY4742. Yeast, 20, 857-63, 2003.
  • Patnaik, P.R.Oscillatory metabolism of Saccharomyces cerevisiae: An overview of mechanisms and models. Biotechnol. Adv., 21, 183-192, 2003.
  • Lachance, M.A.; Daniel, H.M.; Meyer, W.; Prasad, G.S.; Gautam, S.P. and Mills, K.B.The D1/D2 domain of the large subunit rDNA of the yeast species Clavispora lusitaniae is unusually polymorphic. FEMS Yeast Res., 4, 253-258, 2003.
  • Agarwal, V. & Kishan, K.V.R.OB fold: Growing bigger with functional consistency. Current Protein Peptide Science, 4, 195-206, 2003.
  • Kaur, H. & Raghava, G.P.S.BTEVAL: A server for evaluation of b-turn prediction methods. J. Bioinformatics Computational Biology, 1, 495-504, 2003.
  • Singh, K.V.S.; Kaur, J.; Varshney, G.; Raje, M. & Suri, C.R.An ELISA based approach to optimise elution conditions for screening antibodies against hapten. Analytical Bioanalytical Chem., 377, 220-224, 2003.
  • Kaur, R. & Raje, M.A solid phase method for evaluation of gold conjugate used in quantitative detection of antigen by immunogold labeling electron microscopy. J. Immunological Methods, 279, 33-40, 2003.
  • Zhao, Chenhua; Yao, Juming; Masuda, Hiromi; Kishore, R. and Asakura, T.Structural characterisation and artificial fiber formation of Bombyx mori silk fibroin in hexafluoro-Iso-propanol solvent system. Biopolymers, 69, 253-259, 2003.
  • Singh, O.V.; Jain, R.K. & Singh, R.P.Gluconic acid production under varying fermentation conditions by Aspergillus niger. J. Chem. Technol. Biotechnol., 78, 208-212, 2003.
  • Singh, O.V.; Labana, S.; Pandey, G.; Budhiraja, R. & Jain, R.K.Phytoremediation: An overview of metallic ion decontamination from soil. Appl. Microbiol. Biotechnol., 61, 405-412, 2003.
  • Singh, O.V. & Jain, R.K.Phytoremediation of toxic aromatic pollutants from soil. Appl. Microbiol. Biotechnol., 63, 128-135, 2003.
  • Moghadam, M.F.; Tandon, C.; Aggarwal, S.; Singla, S.K.; Singh, S.K.; Sharma, S.K.; Varshney, G.C. & Jethi, R.K.Concentration of a potent calcium oxalate monohydrate crystal growth inhibitor in the urine of normal persons and kidney stone patients by ELISA-based assay system employing monoclonal antibodies. J. Cellular Biochem., 90, 1261-1275, 2003.
  • Moniaux, N.; Varshney, G.C.; Chauhan, S.C.; Copin, M.C.; Jain, M.; Wittel, U.A.; Andrianifahanana, M. & Aubert, Jean-Pierre.Generation and characterisation of anti-MUC4 monoclonal antibodies reactive with normal and cancer cells in humans. J. Histochem. Cytochem., 52, 1-9, 2003.
  • Pandey, G.; Paul, D. & Jain, R.K.Branching of nitrobenzoate degradation pathway in Arthrobacter protophormiae RKJ100: Identification of new intermediates. FEMS Microbiology Lett., 229, 231-236, 2003.
  • Awasthi, N.; Singh, A.K.; Jain, R.K.; Khangarot, B.S. & Kumar, A.Degradation and detoxification of endosulfan isomers by a defined co-culture of two Bacillus strains. Appl. Microbiol. Biotechnol., 62, 279-283, 2003.
  • Suvas, S.; Vohra, H. and Agrewala, J.N. Modulation of the expression of M150 on macrophages by Th1/Th2 cytokines and co-stimulatory molecules CD40, B7-1, B7-2 and ICAM-1. Clin. Exp. Immunol., 134,232-7, 2003.
  • Agrewala, J.N.; Suvas, S.; Singh, V. and Vohra, H. Delivery of antigen in allogeneic cells preferentially generates CD4+ Th1 cells. Clin. Exp. Immunol., 134, 13-22, 2003.
  • Mukherjee, S.; Shukla, A. & Guptasarma, P. Single-step purification to homogeneity of the SlyD peptidyl prolyl isomerase (PPI) from Escherichia coli cytoplasmic extracts. Biotech. Appl. Biochem., 37, 183-186, 2003.
  • Kundu, B.; Shukla, A. & Guptasarma, P. Peptide scanning-based identification of regions of gamma-II crystallin involved in thermal aggregation: Evidence of the involvement of structurally-analogous helix-containing loops from the two double Greek key domains of the molecule. Arch. Biochem. Biophys., 410, 69-75, 2003.
  • Kumar, C.; Sharma, R. and Bachhawat, A.K. Utilization of glutathione as an exogenous sulphur source is independent of g-glutamyl transpeptidase in the yeast Saccharomyces cerevisiae: Evidence for an alternative gluathione degradation pathway. FEMS Microbiology Letters, 219, -187-94, 2003.
  • Sharma, K.G.; Kaur, R. and Bachhawat, A.K.The glutathione-mediated detoxification pathway in yeast: An analysis using the red pigment that accumulates in certain adenine biosynthetic mutants of yeast reveals the involvement of novel genes. Archives Microbiol., 180, 108-17, 2003.
  • Ganguly, D.; Srikanth, C.V.; Kumar, C.; Vats, P. and Bachhawat, A.K.Why is glutathione (a tripeptide) synthesized by specific enzymes while TSH releasing hormome (TRH or thyroliberin), also a tripeptide, is produced as part of a prohormone protein? [Is there an answer?]. IUBMB Life, 55, 553-554, 2003.
  • Pruthi, V. & Cameotra, S.S.Effect of nutrients on optimal production of biosurfactant by Pseudomonas putida- a Gujarat oil field isolate. J. Surfactants Detergents, 6, 6568, 2003.
  • Radha Kishan, K.V.SH3-fold proteins are structurally conserved and functionally divergent. Current Protein Peptide Science, 4, 195-206, 2003.
  • Raghava, G.P.S.; Searle, S.M.; Audley, P.C.; Barber, J.D. and Barton G.J. OXBench: Evaluation of protein multiple sequence alignment. BMC Bioinformatics, 4, 2003.
  • Patnaik, P.R.An integrated hybrid neural system for noise filtering, simulation and control of a fed-batch recombinant fermentation. Biochem Engng J, 15, 165-175, 2003.
  • Patnaik, P.R.Effect of fluid dispersion on cybernetic control of microbial growth on substitutable substrates. Bioproc. Biosyst. Engng., 25, 315-321, 2003.
  • Bhasin, M. and Raghava, G.P.S.Prediction of promiscuous and high affinity mutated MHC binders. Hybrid. Hybridomics, 22, 229-234, 2003.
  • Singh, Swaranjit and Bollag, Jean-MarcBiosurfactant enhanced bioremediation of polyaromatic hydrocarbons. CRC Rev. Environ. Sc. Technol., 30, 111-126, 2003.
  • Swaranjit SinghSynthesis of surface active compounds by microorganisms. In Biotechnology of microbes and sustainable utilization, ed. R.C. Rajak, Scientific Publishers, chapter 30, 208-215, 2003.
  • Raghava, G.P.S.; Solanki, R.J.; Soni, V. and Agrawal, P.Fingerprinting methods for phylogenetic classification and indentification of microorganisms based on variation in 16S rRNA gene sequences. Page 373-82, Chapter 44, BioComputing: Computer Tools for Biologists. Edited By Staurt M. Brown, 2003.
  • C Raman SuriImmunosensors for pesticide monitoring. Advances in Biosensors (Elsevier publication), eds. A.P.F. Turner and B.D. Malhotra, vol. 5, 161-178, 2003.

2002

  • Banerjee, P.P.; Vinay, D.S.; Mathew, A.; Raje, M.; Parekh, V.; Prasad, D.V.; Kumar, A.; Mitra, D. and Mishra, G.C.Evidence that glycoprotein 96 (b2), a stress protein, functions as a th2-specific costimulatory molecule. J. Immunol., 169, 3507-3518, 2002.
  • Majumdar, Sekhar; Lamothe Betty and Aggarwal, B.B. Thalidomide suppresses NF-kB activation induced by TNF and H2O2, but not that activated by ceramide, lipopolysaccharides, or phorbol ester. J. Immunol., 168, 2644-2651, 2002.
  • Ashikawa, K.; Majumdar, Sekhar; Banerjee, S; Bharti, A.C.; Shishodia, S. and Aggarwal, B.B.Piceatannol Inhibits TNF-induced NF-kB activation and NF-kB-Mediated gene expression through suppression of IkB a kinase and p65 phosphorylation. J. Immunol., 169, 6490-6497, 2002.
  • Dhar, Jayeeta; Pande, Abhay, H.; Sundram, Vasudha; Nanda, J.S.; Mande, S.C. and Sahni, G.Involvement of a nine-residue loop of streptokinase in the generation of macromolecular substrate-specificity by the activator complex through interaction with substrate kringle domains. J. Biol. Chem., 277, 13257-13267, 2002.
  • Pathania, Ranjana; Navani, N.K.; Rajamohan, G. and Dikshit, K.L.Mycobacterium tuberculosis hemoglobin HbO associates with membranes and stimulates cellular respiration of recombinant E. coli. J. Biol. Chem., 277, 15293-15302, 2002.
  • Suvas, S.; Singh, V.; Sahdev, S.; Vohra, H. and Agrewala, J.N.Distinct roles of CD80 & CD86 in the regulation of the activation of B cell & B cell lymphoma. J. Biol. Chem., 277, 7766-7775, 2002.
  • Patnaik, P.R.Can imperfections help to improve the performances of bioreactors?. Trends Biotechnol., 20, 135-137, 2002.
  • Samanta, S.K.; Singh, O.V. and Jain, R.K.Polycyclic aromatic hydrocarbons: Environmental pollution and bioremediation. Trends Biotechnol., 20, 243-248, 2002.
  • Pathania, R.; Navani, N.K.; Gardner, A.M.; Gardner, P.R. and Dikshit, K.L.Nitric oxide scavenging and detoxification by the Mycobacterium tuberculosis hemoglobin, HbN in Escherichia coli. Mol. Microbiol., 45, 1303-1314, 2002.
  • Sarkar, Dibyendu; Azaro, M.A.; Aihara, H.; Papagiannis, C.V.; Tirumalai, R.; Nunes-Duby, S.E.; Johnson, RC.; Ellenberger, T. and Landy, Arthur Differential affinity and cooperativity functions of the amino-terminal 70 residues of g-integrase. J. Mol. BioI., 324, 775-789, 2002.
  • Issac, B.; Singh, H.; Kaur, H. and Raghava, G.P.S.Locating probable genes using fourier transform. Bioinformatics, 18, 196-197, 2002.
  • Kaur, H. and Raghava, G.P.S.BetaTPred: Prediction of beta-turns in a protein using statistical algorithms. Bioinformatics, 18, 498-499, 2002.
  • Kaur, H. and Raghava, G. P. S. An Evaluation of b-Turn Prediction Methods. Bioinformatics, 18, 1508-14,2002.
  • Rajamohan, G.; Dahiya, M.; Mande, S.C. and Dikshit, K.L.Function of 90-loop (Thr90-Glu100) region of staphylokinase in plasminogen activation probed through site-directed mutagenesis and loop deletion. Biochem J., 365, 379-389, 2002.
  • Thungapathra, M.; Amita; Sinha, K.K.; Chaudhuri, S.R.; Garg, Pallavi; Ramamurthy, T.; Nair, G.B. and Ghosh, AmitOccurrence of antibiotic resistance gene cassettes aac(6Â’)-Ib, drfA5, dfrA12 and ereA2 in class I integrons in non-01, non-0139 vibrio cholerae in India. Antimicrob. Agents Chemother., 46, 2948-2955, 2002.
  • Asakura, T.; Sugino, R.; Yao, J.; Takashima, H. and Kishore, R. Comparative structure analysis of tyrosine and valine residues in unprocessed silk fibroin (Silk I) and in the processed silk fiber (Silk II) from Bombyx mori using solid-state 13C, 15N and 2H NMR. Biochemistry, 41, 4415-4424, 2002.
  • Johnson, G.R.; Jain, R.K. and Spain, J.C.Origins of the 2,4-dinitrotoluene pathway. J. Bacteriol., 184, 4219-4232, 2002. Ramandeep; Pathania, Ranjana; Sharma, V.; Mande, S.C. and Dikshit, K.L.Chimeric Vitreoscilla hemoglobin (VHb) carrying flavoreductase domain relieves nitrosative stress in E. coli: New insight into the functional role of VHb. Appl. Environ. Microb., 68, 152-160, 2002.
  • Mehta, N.; Vater, Joachim and Cameotra, Swaranjit Singh. Matrix assisted laser desorption / ionization mass spectrometry of lipopeptide biosurfactants in whole cells and culture filtrates of Bacillus subtilis C-1 isolated from petroleum sludge. Appl. Environ. Microb., 68, 6210-6219, 2002.
  • Pandey, G. and Jain, R.K. Bacterial chemotaxis toward environmental pollutants: Role in bioremediation. Appl. Environ. Microb., 68, 5789-5795, 2002.
  • Kundu, B.; Shukla, A. and Guptasarma, P. Manipulation of unfolding-induced protein aggregation by peptides selected for aggregate-binding ability through phage display library screening. Biochem. Biophys. Res. Commun., 291, 903-907, 2002.
  • Kundu, B. and Guptasarma, P. Use of a hydrophobic dye to indirectly probe the structural organization & conformational plasticity of molecules in amorphous aggregates of carbonic anhydrase. Biochem. Biophys. Res. Commun., 293, 572-577, 2002.
  • Swartz, M.J.; Batra, S.K.; Varshney, G.C., Hollingsworth, M.A.; Yeo, C.J.; Cameron, J.L.; Wilentz, R.E.; Hruban, R.H. and Argani, PedramMUC4 expression increases progressively in pancreatic intraepithelial neoplasia (PanIN). Am. J. Clinical Pathology, 117, 791-796, 2002.
  • Chaba, Rachna; Raje, M. and Chakraborti, P.K. Evidence that a eukaryotic-type serine / threonine protein kinase from Mycobacterium tuberculosis regulates morphological changes associated with cell division. Eur. J. Biochem., 269, 1078-1085, 2002.
  • Leelavathi, Sadhu; Gupta, Naveen; Maiti, Sankar; Ghosh, Amit and Reddy, Vanga Siva. Overproduction of an alkali- and thermo-stable xylanase in tobacco chloroplasts and efficient recovery of the enzyme. Mol. Breeding, 2002.
  • Khorrami, A.K.; Choudhury, A.; Andrianifahanana, M.; Varshney, G.C.; Bhattacharyya, S.N.; Hollingsworth, M.A.; Kaufman, Bernard and Batra, S.K. Purification and characterization of a human pancreatic adenocarcinoma mucin. J. Biochem., 131, 21-29, 2002.
  • Sahoo, D.K. and Agarwal, G.P. Effect of oxygen transfer on glycerol biosynthesis by an osmophilic yeast Candida magnoliae I2B. Biotechnol. Bioeng., 78, 545-555, 2002.
  • Ramandeep; Dikshit, K.L. and Raje, M. Optimization of immunogold labeling TEM: An ELISA-based method for evaluation of blocking agents for quantitative detection of antigen. J. Histochem. Cytochem., 50, 863-873, 2002.
  • Suri, C.R.; Raje, M. and Varshney, G.C. Immunosensor for pesticide analysis: Antibody production and sensor development. Crit. Reviews Biotechnol., 22, 15-32, 2002.
  • Ashish and Kishore, R. Folded conformation of an immunostimulating tetrapeptide rigin: High temperature molecular dynamics simulation study. Bioorgan. Med. Chem., 10, 4083-4090, 2002.
  • Makkar, R.S. and Cameotra, Swaranjit Singh. An update on the use of unconventional substrates for biosurfactant production and their new applications. Appl. Microbiol. Biotechnol., 58, 428-434, 2002.
  • Mukhopadhyay, U.K. and Sahni, G. High level production and purification of biologically active recombinant buffalo and goat growth hormones. J. Biotechnol., 97, 199-212, 2002.
  • Bisht, H.; Chugh, D.; Raje, M.; Swaminathan, S. and Khanna, N. Recombinant dengue virus type 2 envelope / hepatitis B surface antigen hybrid protein expressed in Pichia Pastoris can function as a bivalent immunogen. J. Biotechnol., 99, 97, 2002.
  • Kaur, R.; Dikshit, K.L. and Raje, M. Pre-screening for antigen detectability in cells: A TEM based solid phase digital immunogold detection method utilizing ultra low volumes of reagents. J. Microsc., 208, 100-107, 2002.
  • Saha, Satish; Raje, M. and Suri, C.R. Sandwich microgravimetric immunoassay: Sensitive and specific detection of low molecular weight analytes using piezoelectric quartz crystal. Biotechnol. Lett., 24, 711-716, 2002.
  • Patnaik, P.R. Condition number analysis for a preliminary evaluation of recombinant fermentation performance. Biotechnol. Lett., 24, 115-119, 2002.
  • Vats, P. and Banerjee, U.C. Studies on the production of phytase by a newly isolated strain of Aspergillus niger var teigham obtained from rotten wood-logs. Process. Biochem., 38, 211-217, 2002.
  • Mukhopadhyay, U.K. and Sahni, G. Cloning, characterization and expression studies in E. coli of growth hormone cDNAs from Indian Zebu cattle, Reverine Buffalo and Beetal Goat. Anim. Biotechnol., 13, 179-193, 2002.
  • Patnaik, P.R. Comparative evaluation of batch and fed-batch bioreactors for GAPDH production by recombinant Escherichia coli with distributed plasmid copy number. Chemical Eng. J., 87, 357-366, 2002.
  • Mittal, J.; Dogra, N.; Das, R. and Majumdar, S. vitro cts cAMP-elevating agents and glucocorticoid either alone or in combination on the production of nitric oxide, interleukin-12 and interleukin-10 in IFN- g- and LPS-activated mouse peritoneal macrophages. Folia Microbiol., 47, 709-716, 2002.
  • Patnaik, P.R.Temperature optima of enzymes: Sifting fact from fiction. Enzyme Microb. Technol., 31, 198-200, 2002.
  • Patnaik, P.R. Steady state performance and sensitivity of a continuous recombinant fermentation with plasmid copy number multiplicity. Indian J. Biotechnol. 1, 263-269, 2002.
  • Batra, N.; Singh, J.; Banerjee, U.C.; Patnaik, P.R. and Sobti, R.C. Thermostable b -galactosidase from Bacillus coagulans RCS3: Production and characterisation. Biotechnol. Appl. Biochem., 36, 1-6, 2002.
  • Patnaik, P.R.Neural optimization of fed-batch streptokinase fermentation in a nonideal bioreactor. Can. J. Chem. Engng., 80, 920, 2002.
  • Kumar, NareshWorking through laboratory/industry linkages: Creating an enabling mechanism in CSIR India. Phys. Scripta, T97, 67-72, 2002.
  • Agrawal, V. and Radhakishan, K.V. Promiscuous binding nature of SH3 domains to their target proteins. Protein Peptide Lett., 9, 185-193, 2002.
  • Maiti, S.; Luthra-Guptasarma, M. and Guptasarma, P. Phenomenological perspectives on the folding of beta / alpha barrel domains through the modular formation and assembly of smaller structural elements. IUBMB Life, 54, 213-221, 2002.
  • Mukhopadhyay, U.K. and Sahni, G. An insight into the possible mechanism of working of two-cistronic gene expression systems and rational designing of newer systems. J. Biosci., 27, 219-231, 2002.
  • Rao, G.S.; Bachhawat, A.K. and Gupta, C.M. Two-hybrid-based analysis of protein-protein interactions of the yeast multidrug resistance protein, Pdr5p. Funct. Integ. Genomics, 1, 357-366, 2002.
  • Goyal, N.; Jain, S.C. and Banerjee, U.C. Comparative studies on microbial adsorption of heavy metals. Adv. Environ. Res., 2002.
  • Sharma, K.G.; Mason, D.L.; Liu, G.; Rea, P.A.; Bachhawat, A.K. and Michaelis, S. Localization, regulation and substrate transport properties of BpT1p, a Saccharomyces cerevisiae MRP-type ABC transporter. Eukaryotic Cell, 1, 391-400, 2002.
  • Makkar, R.S. and Cameotra, Swaranjit Singh. Effects of various nutritional supplements on biosurfactant production by a strain of Bacillus subtilis at 45 ?C. J. Surfactants Detergents, 5, 11-17, 2002.
  • Budhiraja, R.; Basu, A. and Jain, R.K. Microbial diversity: Significance, conservation and application. Science Lett., 25, 189-201, 2002.
  • Agrawal, V.; Sharma, R.; Vohra, R.M. and Radha Kishan, K.V. Crystallization and preliminary X-ray diffraction analysis of a thermostable D-hydantoinase from the mesophilic Bacillus sp. AR9. Acta Cryst., 58, 2002.
  • Issac, B. and Raghava, G.P.S. GWFASTA: A server for FASTA search in Eukaryotic and Microbial genomes. Biotechniques, 33, 548-56, 2002.
  • Singh, H. and Raghava, G.P.S. Detection of Orientation of MHC Class II Binding Peptides Using Bioinformatics Tools. Biotech Software Internet Report, 3, 146, 2002.
  • Pandey, G.; Chauhan, A.; Samanta, S.K. and Jain, R.K. Chemotaxis of a Ralstonia sp. SJ 98 toward co-metabolizable nitroaromatic compounds. Biochem. Biophys. Res. Commun., 299, 404-409, 2002.
  • Asakura, T.; Kato, H.; Yao, J.; Kishore, R. and Shirai, M. Design, expression and structural characterization of hybrid proteins of Samia cynthia ricini and Bombyx mori silk fibroin. Polymer J., 34, 936-943, 2002.
  • Swain, S.L.; Agrewala, J.N.; Brown, D.M. and Roman, E. Regulation of memory CD4 T cells: Generation, localization & persistence. Adv. Exp. Med. BioI., 512, 113-20, 2002.
  • Sharma, R; Soni, S.K.; Vohra, R.M.; Gupta, L.K. and Gupta, J.K. Purification and characterization of a thermostable alkaline lipase from a new thermophilic Bacillus sp. RSJ-1. Process Biochem., 37, 1075-1084,2002.
  • Pandey, K.K.; Mayilraj, S. and Chakrabarti, T. Pseudomonas indica so. nov., a novel butane utilizing species. Int. J. Syst. Evol. Microbiol., 52, 1559-1567, 2002.
  • Ananthapadmanaban, D. Non-deposit of voucher cultures. Mycological Res., 106, 641, 2002.
  • Batra, N.; Singh, J.; Banerjee, U.C.; Patnaik, P.R. & Sobti, R.C. Thermostable b -galactosidase from Bacillus coagulans RCS3: Production and characterisation. Biotechnol. Appl. Biochem., 36, 1-6, 2002.
  • Sharma, R.; Soni, S.K.; Vohra, R.M.; Jolly, R.S.; Gupta, L.K. and Gupta, J.K. Production of an extracellular alkaline lipase from a new Bacillus sp. RSJ1 and its application in ester hydrolysis. Indian J. Microbiol., 42, 49-54. 2002.
  • Patnaik, P.R. Exploiting the nonideal features of bioreactors for more efficient resource utilization. Utilization of Bioresources, Allied Pub., New Delhi, 297, 2002.

2001

  • Khatri N.,Nichani A.K.,Sharma R.D.,Khatri M. and Malhotra D.V. Effect of vaccination in the field with the Theileria annulata (Hisar) cell culture vaccine on young calves born during the winter season Veterinary Research Communications, 25(3), 179-88, 2001.
  • Singh S.,Nichani A.K.,Khatri N.,Manuja A.,Sharma R.D. and Malhotra D.V. Impact of field vaccination with a Theileria annulata schizont cell culture vaccine on the epidemiology of tropical theileriosis. Veterinary Parasitology, 101(2), 91-100, 2001.
  • Mazumdar, Sekhar and Aggarwal, B.B. Methotrexate suppresses NF- a kB activation through inhibition of IkB a phosphorylation and degradation. J. Immunol., 167, 2911-2920, 2001.
  • Sharma, V.M.; Chopra, R. and Ganesan, K. Quantitative target display: A method to screen yeast mutants conferring quantitative phenotypes by ‘mutant-DNA fingerprintsÂ’. Nucleic Acids Res., 29, 86-6, 2001.
  • Mukerjee, K.; Seetharaman, P.; Raje, M. and Mukhopadhyay, A.SopE acts as a Rab5 specific nucleotide exchange factor and recruits non-prenylated Rab5 on Salmonella containing phagosomes to promote fusion with early endosome. J. Biol. Chem., 276, 23607-23615, 2001.
  • Ramandeep; Hwang, Kwang-Woo; Raje, M.; Kim, Kyung-Jin, Stark, C. Benjamin; Dikshit, Kanak, L. and Webster, Dale A.Vitreoscilla Hemoglobin: Intracellular localization and binding to membranes. J. Biol. Chem., 276, 24781-24789, 2001.
  • Sarin, Jyoti; Aggarwal, Sita; Chaba, Rachna; Varshney, G.C. and Chakraborti, P. K. B subunit of phosphate specific transporter from Mycobacterium tuberculosis is a thermostable ATPase. J. Biol. Chem., 276, 44590-44597, 2001.
  • Ahmed, Shakil; Saini, Sharanjot; Arora, Sumit and Singh, JagmohanChromodomain protein Swi6-mediated role of DNA polymerase ? in establishment of silencing in fission yeast. J. Biol. Chem., 276, 47814-47821, 2001.
  • Gutgsell, N.S.; Campo, M.D.; Chaudhuri, Saumya Ray and Ofengand, J.A second function for pseudouridine synthases: A point mutant of RluD unable to form pseudouridines 1911, 1915 and 1917 in Escherichia coli 23S ribosomal RNA restores normal growth to an RluD-minus strain. RNA, 7, 990-998, 2001.
  • Radha Kishan, K.V.; Mewcomer, M.E.; Rhodes, T.H. and Guilliot, S.D.Effect of pH and salt bridges on structural assembly: Molecular structures of monomer and intertwined dimer of eps8 sh3 domain. Protein Sci., 10, 1046-1055, 2001.
  • Singh, H. and Raghava, G.P.S. ProPred: Prediction of HLA-DR binding sites. Bioinformatics, 17, 1236-1237, 2001.
  • Ish Kumar and Jolly, R.S. A thioesterase for chemoselective hydrolysis of S-acyl sulfanylalkanoates. Org. Lett., 3, 607-610, 2001.
  • Chauhan, R. and Mande, S.C. Characterisation of Mycobacterium tuberculosis H37Rv AhpC points to the importance of ionic interactions in oligomerization and activity. Biochem. J., 354, 209-215, 2001.
  • Wittel, U.; Goel, A.; Varshney, G.C. and Batra, S.K. Mucin antibodies- New tools in diagnosis and therapy of cancer. Frontiers Bioscience, 6, 1296-1310, 2001.
  • Jain, Maneesh; Karan, D.; Batra, S.K. and Varshney, G.C. Mucins in protozoan parasites. Frontiers Bioscience, 6, 1276-1283, 2001.
  • Bansal, P.K.; Sharma, P. and Mondal, Alok. A minisatellite sequence in the upstream region of DURA3 gene from halotolerant yeast Debaryomyces hansenii. Yeast, 18, 1301-1307, 2001.
  • Bansal, P.K.; Sharma, P. and Mondal, Alok. A PBS2 homologue from Debaryomyces hansenii shows differential effect on calcoflour and polymyxin B sensitivity in Saccharomyces cerevisiae. Yeast, 18, 1207-1216, 2001.
  • Padda, R.S.; Pandey, K.K.; Kaul, S.; Nair, V.D.; Jain, R.K.; Basu, S.K. and Chakrabarti, T. A novel gene encoding a 54 kDa polypeptide is essential for butane utilization by Pseudomonas sp. IMT37. Microbiol., 147, 2479-2491, 2001.
  • Ramandeep; Dikshit, K.L and Raje, M. Optimization of immunogold labelling TEM. An ELISA based method for convenient simulation of processing conditions for quantitative detection. J. Histochem. Cytochem., 49, 355-368, 2001.
  • Thakur, A.K. and Kishore, R. Crystallographic characterisation of novel ?-turn like folds in a model peptide: Stabilisation by main-chain to side-chain interactions. Tetrahedron Lett., 42, 4691-4692, 2001.
  • Raghavendra, V.; Singh, V.; Shaji, A.V.; Vohra, H.; Kulkarni, S.K. and Agrewala, J.N. Melatonin provides signal 3 to unprimed CD4+ T cells but failed to stimulate LPS primed B cell. Clin. Exp. Immunol., 124, 414-422, 2001.
  • Taneja, B. and Mande, S.C. Metal ions modulate the plastic nature of M. tuberculosis chaperonin-10. Prot. Eng., 14, 391-395, 2001.
  • Patnaik, P.R. Microbial metabolism as an evolutionary response: The cybernetic approach to modelling. Crit. Reviews Biotechnol., 21, 155-175, 2001.
  • Raghavendra, V.; Singh, V.; Kulkarni, S.K. and Agrewala, J.N. Melatonin enhances Th2 mediated immune response: Lack of sensitivity to reversal by naltrexone or benzodiazepine receptor antagonists. Mol. Cell. Biochem., 221, 57-62, 2001.
  • Sareen, D.; Sharma, R. and Vohra, R.M. Chaperone-assisted overexpression of an active D-carbamoylase from Agrobacterium tumefaciens AM10. Prot. Expres. Puri., 23, 374-379, 2001.
  • Chakraborty, S.; Garg, P.; Ramamurthy, T.; Thungapathra, M.; Gautam, J.K.; Kumar, C.; Maiti, S.; Yamasaki, S.; Shimada, T.; Takeda, Y.; Ghosh, Amit and Nair, G.B. Comparison of antibiogram, virulence genes, ribotypes and DNA fingerprints of V. cholerae matching serogroups isolated from hospitalized diarrhoea cases and from the environment during 1997-98 in Calcutta, India. J. Med. Microbiol., 50, 879-888, 2001.
  • Samanta, S.K.; Bhushan, B. and Jain, R.K. Efficiency of naphthalene and salicylate degradation by a recombinant Pseudomonas putida mutant strains defective in glucose metabolism. Appl. Microbiol. Biotechnol., 55, 627-631, 2001.
  • Thakur, A.K. and Rishore, R. Influence of the hydrophobic interactions on the conformational adaptability of the b -Ala residue. J. Peptide Res. 57, 455-461, 2001.
  • Singh, J.; Vohra, R.M. and Sahoo, D.K.Purification & characterisation of two extracellular alkaline proteases from a newly isolated obligate alkalophilic Bacillus sphaericus. J. Indus. Microbiol. Biotechnol., 26, 387-393, 2001.
  • Patnaik, P.R. A sensitivity approach to manipulated variable selection for control of a continuous recombinant fermentation. Chem. Eng. Sci., 56, 3311-3314, 2001.
  • Sahoo, D.K. and Agarwal, G.P. An investigation on glycerol biosynthesis by an osmophilic yeast in a bioreactor. Process Biochem., 36, 839-846, 2001.
  • Patnaik, P.R. Investigation of induction effect on the steady state performance of a continuous fermentation for recombinant b -galactosidase. Process Biochem., 36, 1069-1074, 2001.
  • Patnaik, P.R.Further enhancement of fed-batch streptokinase yield in the presence of inflow noise by coupled neural networks. Process Biochem., 37, 145-157, 2001.
  • Patnaik, P.R. A simulation study of dynamic neural filtering and control of a fed-batch bioreactor under nonideal conditions. Chem. Eng. J., 84, 533-541, 2001.
  • Ahmed, S. and Singh, J. An imprinting function of DNA polymerase a in establishment of silencing in Schizosaccharomyces pombe. Curr. Sci., 80, 1337-1343, 2001.
  • Patnaik, P.R. Enhancement of protein activity in a recombinant fermentation by optimising fluid dispersion and initial plasmid copy number distribution. Biochem. Eng. J., 9, 111-118, 2001.
  • Patnaik, P.R. Hybrid neural simulation of a fed-batch bioreactor for a nonideal recombinant fermentation. Bioprocess Biosystems Eng., 24, 151-161, 2001.
  • Patnaik, P.R. Architectures for hybrid neural networks in their applications to biological reactors. Biotech. J. Intl., 6, 16-18, 2001.
  • Makkar, R.S. and Cameotra, Swaranjit Singh. Enhanced biosurfactant production by Bacillus subtilis at thermophilic conditions by foam fractionation. J. Surfactants Detergents, 4, 355-357, 2001.
  • Banat, I.M.; Makkar, R.S. and Cameotra, Swaranjit Singh. Potential commercial applications of microbial surfactants. Appl. Microbiol. Biotechnol., 53, 495-508, 2001.
  • Agrawal, V. and Radhakishan, K.V. Functional evolution of two subtly different (similar) folds. Biomedcentral Structural Biology, 2001.
  • Mittal, J.; Dogra, N.; Vohra, H. and Mazumdar, S. Effects of prostaglandin E2 and nitric oxide inhibitors on the expression of interleukin-10, interleukin-12 and MHC class-II molecules in Mycobacterium microti-infected and interferon-gamma treated mouse peritoneal macrophages. Folia Microbiol., 46, 259-64, 2001.
  • Owais, M.; Masood, A.K.; Agrewala, J.N.; Bisht, D. and Gupta, C.M. Use of liposomes as an immunopotentiating delivery system: In perspective of vaccine development. Scand. J. Immunol., 54, -32, 2001.
  • Raghava, G.P.S. PDSB: Public domain software in biology. Biotech Software and Internet Report, 2, 154-156, 2001.
  • Raghava, G.P.S. and Agrewala, J.N. A web based method for computing endpoint titer and concentration of antibody/antigen. Biotech Software and Internet Report, 2, 196-7, 2001.
  • Raghava, G.P.S. PDWSB: Public domain web servers in biology. Biotech Software and Internet Report, 2, 152-153, 2001.
  • Raghava, G.P.S. A web server for computing size of DNA/Protein fragment using graphical method. Biotech Software and Internet Report, 2, 198-200, 2001.
  • Raghava, G.P.S. A graphical web server for the analysis of protein sequences and alignment. Biotech Software and Internet Report, 2, 255-258, 2001 .
  • Ish, Kumar; Kavita, Manju and Jolly, R.S. A new biocatalyst for the preparation of enantiomerically pure 2-arylpropanoic acids. Tetrahedron: Asymmetry, 12, 1431-34. 2001.
  • Chauhan, A.; Samanta, S.K. and Jain, R.K. Degradation of nitrophenolic compounds by microorganisms. In: Environmental Pollution and Management of Wastewaters by Microbial Technique. (Ed. By G.R. Pathade and P.K. Goel), pp. 219-232, 2001, ABD Publishers, Jaipur, India.

2000

  • Khatri N., Nichani A.K., Sharma R.D. and Khatri M.Suitability of gelatin for preservation of in vitro propagated Theileria annulata schizonts. Indian Veterinary Journal, 77, 479-482, 2000.
  • Mukerjee, Konark; Siddiqi, Shadab, A.; Hashim, Shehla; Raje, M.; Basu, S.K. and Mukhopadhyay, AmitabhaLive Salmonella recruits NSF on phagosomal membrane & promotes fusion with early endosome, J. Cell Biol., 148, 741-753, 2000.
  • Bachhawat, N. and Mande, S.C. Complex evolution of the inositol-1-phosphate synthase among archaea and eubacteria. Trends Genet., 16, 111-113, 2000.
  • Hashim, Shehla; Mukherjee, Konark; Raje, Manoj; Basu, S.K. and Mukhopadhyay, A. Live Salmonella modulate expression of rab proteins to persist in a specialised compartment and escape transport to lysosomes. J. Biol. Chem., 275, 16281-16288, 2000.
  • Bourbouloux, Andree; Shahi, Puja; Chakladar, Abhijit; Delrot, Serge and Bachhawat, A.K. Hgt1p, a high affinity glutathione transporter from the yeast Saccharomyces cerevisaie, J. Biol. Chem., 275, 13259-13267, 2000.
  • Ho, Siew, C.; Chaudhuri, Subhra; Bachhawat, A.K. and Pillai, Shiv.Accelerated proteasomal degradation of membrane immunoglobulin heavy chains, Immunol., 164, -4719, 2000.
  • G, Rajamohan and Dikshit, K.L. Role of the N-terminal region of Staphylokinase (SAK): Evidence for the participation of the N-terminal region of SAK in the enzyme-substrate complex formation. S Lett., 474,-158, 2000.
  • Gupta, N.; Reddy, Vanga Shiva; Maiti, Sankar and Ghosh, Amit. Cloning, expression and sequence analysis of the gene encoding the alkali stable thermostable endoxylanase from the alkalophilic mesophilic Bacillus sp. NG-27. Appl. Environ. Microbiol., 66, 2631-2635, 2000.
  • Ashish; Grover, Arvinder and Kishore, R. Characterisation of a novel type VII beta-turn conformation for a bio-active tetrapeptide rigin: A synergy between theoretical and experimental results, Eur. J. Biochem., 267, 1455-1463, 2000.
  • Bhatt, Kamlesh; Banerjee, S.K. and Chakraborti, P.K. Evidence that phosphate specific transporter is amplified in a fluoroquinolone resistant Mycobacterium smegmatis. Eur. J. Biochem., 267, 4028-4032, 2000.
  • Mande, S.C. and Sobhia ElizabethStructural characterization of the protein-denaturant interactions: Crystal structures of hen egg white lysozyme in complex with guanidinium chloride and DMSO. Prot. Eng., 13, 133-141, 2000.
  • Chauhan, Ashvini and Jain, R.K. Degradation of o-nitrobenzoate via anthranilic acid (o-aminobenzoate) by Arthrobacter protopharmiae: A plasmid encoded new pathway. Biochem. Biophys. Res. Commun., 267, 236-244, 2000.
  • Chauhan, Ashvini; Chakraborti, A.K. and Jain, R.K. Plasmid-encoded degradation of p-nitrophenol and 4-nitrocatechol by Arthrobacter protopharmiae. Biochem. Biophys. Res. Commun., 270, 733-740, 2000.
  • Samanta, S.K.; Bhushan, B.; Chauhan, A. and Jain, R.K. Chemotaxis of a Ralstonia sp. SJ98 towards different nitroaromatic compounds (NACs) and their degradation. Biochem. Biophys. Res. Commun., 269, 117-123, 2000.
  • Bhushan, B.; Chauhan, A.; Samanta, S.K. and Jain, R.K. Kinetics of biodegradation of p-nitrophenol by different bacteria. Biochem. Biophys. Res. Commun., 274, 626-630, 2000.
  • Bhushan, B.; Samanta, S.K.; Chauhan, A.; Chakraborti, A.K. and Jain, R.K. Chemotaxis and biodegradation of 3-methyl-4-nitrophenol by Roastonia sp. SJ98. Biochem. Biophys. Res. Commun., 275, 129-133, 2000.
  • Thakur, A.K.; Venugopalan, P. and Kishore, R. Collateral existence of a folded and an extended conformations of the beta-Ala moiety in a model peptide. Biochem. Biophys. Res. Commun., 273, 492-498, 2000.
  • Banerjee, S.K.; Bhatt, K.; Misra, P. and Chakraborti, P.K. Involvement of a natural transport system in the process of efflux mediated drug resistance in Mycobacterium smegmatis. Mol. Gen. Genet., 262, 949-956, 2000.
  • Johnson, G.R.; Jain, R.K. and Spain, J.C. Properties of the trihydroxytolune oxygenase from Burkholderia cepacia R34: An extradiol dioxygenase from the 2,4-dinitrotolune pathway. Arch. Microbiol., 173, 86-90, 2000.
  • Bansal, P.K. and Alok, MondalIsolation & sequence of the >HOG1 homologue from Debaromyces hansenii by complementation of hog1 Δ strain of Saccharomyces cerevisiae. Yeast, 16, 81-88, 2000.
  • Ingavale, S.S.; Sharma, K.G. and Bachhawat, A.K. Construction of novel vectors for use in the fission yeast Schizosaccharomyces pombe. Yeast, 16, 1345-1350, 2000.
  • Thakur, A.K. and Kishore, R. Stabilization of novel b -turn like motif by non-conventional intramolecular hydrogen bonding interactions in a model peptide incorporating B-alanine. Biopolymers, 53, 447-454, 2000.
  • Patnaik, P.R.Penicillin fermentation: Mechanisms & models for industrial-scale bioreactors. Crit. Rev. Biotechnol., 20, 1-15, 2000.
  • Raghavendra, V.; Agrewala, J.N. and Kulkarni, S.K.Melatonin reversal of lipopolysaccharide-induced thermal behavioral hyperalgesia in mice. Eur. J. Pharmacol., 395, 15-21, 2000.
  • Sharma, K.G.; Sharma, V.; Bourbouloux, A.; Delrot, S. and Bachhawat, A.K.Glutathione depletion leads to a delayed growth stasis in Saccharomyces cerevisiae: A partially overlapping role played by thioredoxin. Current Genetics, 38, 71-77, 2000.
  • Raghava, G.P.S.; Solanki, R.J.; Soni, V. and Agrawal, P. A fingerprinting method for phylogenetic classification & identification of microorganisms based on variation in 16S rRNA gene sequences. Biotechniques, 29, 108-116, 2000.
  • Mande, S.S.; Gupta, N.; Ghosh, A. and Mande, S.C. Homology modelling of a novel xylanase: Molecular basis of high thermostability and alkaline stability. J. Biomol. Struct. Dyn., 18, 137-144, 2000.
  • Banat, I.M.; Makkar, R.S. and Cameotra, S.S. Potential commercial application of microbial surfactants. Appl. Microbiol. Biotechnol., 53, 495-508, 2000.
  • Patnaik, P.R. Are microbes intelligent beings? An assessment of cybernetic modelling. Biotechnol. Adv., 18, 267-288, 2000.
  • Puri, M. and Banerjee, U.C. Production, purification and characterization of debittering enzyme: naringinase. Biotechnol. Adv., 18, 207-217, 2000.
  • Patel, M.; Stark, B.C.; Hwang, K.; Dikshit, K.L. and Webster, D.A. Cloning and expression of Vitreoscilla hemoglobin gene in Burkholderia sp. Strain DNT for enhancement of 2,4-Dinitrotoluene degradation. Biotechnol. Prog., 16, 26-30, 2000.
  • Pratap, J.; Rajamohan, G. and Dikshit, K.L. Characterization of glycosylated streptokinase secreted from Pichia pastoris: Enhanced resistance of SK to proteolysis by glycosylation. Appl. Microbiol. Biotechnol., 53, 468, 2000.
  • Karmakar, B.; Vohra, R.M.; Nandanwar, H.S.; Sharma, P.; Gupta, K.G. and Sobti, R.C. Rapid degradation of ferulic acid via 4-vinylguiacol and vanillin by a newly isolated strain of Bacillus coagulans. J. Biotechnol., 80, 195-202, 2000.
  • Sareen, D.; Sharma, R.; Nandanwar, H.S. and Vohra, R.M. Two step purification of D(-)-specific carbamoxylase from Agrobacterium tumefaciens AM10. Protein Express. Purif., 21, 170-175, 2000.
  • Naresh, A. and Singh, J. Identification of four genes involved in suppression of the pre-mRNA splicing defect in the sng1-1/rhp6- mutant of fission yeast J. Genet., 79, 83-90, 2000.
  • Patnaik, P.R. An evaluation of models for the effect of plasmid copy number on bacterial growth rate. Biotechnol. Lett., 22, 1719-1725, 2000.
  • Patnaik, P.R. Principal component analysis for minimal model identification of a noise-affected fermentation: Application to streptokinase. Biotechnol. Tech., 22, 393-397, 2000.
  • Mazumdar, S.; Gupta, R. and Dogra, N. Interferon- g - and lipopolysaccharide-induced tumor necrosis factor- a is required for nitric oxide production: Tumor necrosis factor- a and nitric oxide are independently involved in the killing of Mycobacterium microti in interferon- g and lipopolysaccharide-treated J774A.1 cells. Folia Microbiol., 45, 457-463, 2000.
  • Patnaik, P.R.Fractal measures of fluid mixing and filtering of inflow noise in a biological reactor. React. Kinet. Catal. Lett., 71, 301-306, 2000.
  • Patnaik, P.R. Dynamic sensing of intra-cellular variables in an imperfectly mixed bioreactor by a recurrent neural network. Ind. J. Chem. Technol., 7, 318-325, 2000.
  • Thakur, A.K.; Venugopalan, P. and Kishore, R. Entrapping unusual folding characteristics of the B-Ala residues in a model peptide: Boc-BAla-Aib-BAla-NHCH3. J. Peptide Res., 56, 55-58, 2000.
  • Thakur, A.K. and Rishore, R. Influence of the hydrophobic interactions on the conformational adaptability of the b -Ala residue. J. Peptide Res. 57, 1-8, 2000.
  • Chakraborti, S.; Sani, R.K.; Banerjee, U.C. and Sobti, R.C.Production and partial characterization of a novel b -galactosidase from Bacillus sp. J. Indust. Microbiol. Biotechnol., 24, 58-63, 2000.
  • Mazumdar, S.; Kaur, H.; Vohra, H. and Varshney, G.C.Membrane surface of Mycobacterium microti-infected macrophages antigenically differs from that of uninfected macrophages. FEMS Immunol. Med. Microbiol., 28, 71-77, 2000.
  • Chauhan, A.; Samanta, S.K. and Jain, R.K. Degradation of 4-nitrocatechol by Burkholderia capacia: A plasmid encoded novel pathway, J. Appl. Microbiology, 88, 764-772, 2000.
  • Samanta, S.K. and Jain, R.K. Evidence for plasmid-mediated chemotaxis of Pseudomonas putida towards naphthalene and salicylate, Can. J. Microbiol., 46, 1-6, 2000.
  • Bhushan, B.; Samanta, S.K. and Jain, R.K. Indigo production by naphthalene degrading bacteria. Lett. Appl. Microbiol., 31, 5-9, 2000.
  • Patnaik, P.R. On the improvement of bacterial growth on complementary substrates by partial segregration in the broth. J. Chem. Technol. Biotechnol., 75, 229-236, 2000.
  • Patnaik, P.R. Principal component analysis for minimal model identification of a noise-affected fermentation: Application to streptokinase. Biotechnol. Lett., 22, 393-397, 2000.
  • Patnaik, P.R. Plasmid stability analysis in a non-homogeneous bioreactor for a recombinant fed-batch fermentation. Can. J. Chem. Eng., 77, 602-607, 2000.
  • Patnaik, P.R. Optimizing initial plasmid copy number distribution for improved protein activity in a recombinant fermentation. Biochem. Engng. J., 5, 101-107, 2000.
  • Raghava, G.P.S. Fingerprinting methods for phylogenetic classification and indentification of microorganisms based on variation in 16S rRNA gene sequences. Biotechniques, 29, 108-115, 2001.
  • Pruti, Vikas and Swaranjit SinghNovel sucrose lipid produced by Serratia marcescens and its application in enhanced oil recovery. J. Surfactants Detergents, 3, 533-37, 2000.
  • Agrawal, Pushpa. Fingerprinting method for phylogenetic classification and identification of microorganisms based on variation in 16S rRNA gene sequences (Biotechniques, 29, 108-116, 2000). In: 'BioComputing' to be published as a volume in BioFocus Update Series.
  • Ashish and Kishore, R. Further support for the conformation preferences of a type VII b -turn structure in bioactive tetrapeptides: tuftsin and rignin. Proceedings of the 6th Chinese Peptide Symposium 2000.
  • Cameotra, Swaranjit Singh.Microbial culture collections: Their activities and importance. In Microbes: Agriculture, Industry & Environment, pp. 261-269, 2000.

1999

  • Sengupta, Shantanu; Tripathi, Jalaj; Tandon, Ruchi; Raje, Manoj; Roy, R.P.; Basu, S.K. and Mukhopadhyay, A. Hemoglobin endocytosis in Leishmania is mediated through a 46-KDa protein located in the flagellar pocket. J. Biol. Chem., 274,, 2758-2765, 1999.
  • Rana, Seema; Bisht, Deepa and Chakraborti, P.K. Synergistic activation of yeast expressed rat androgen receptor by modulators of protein kinase-A. J. Mol. Biol., 286, 669-681, 1999.
  • Bachhawat, N. and Mande, S.C. Identification of the INO1 gene of M. tuberculosis H37Rv reveals a novel class of inositol-1-phosphate synthase enzyme. J. Mol. Biol., 291, 531-536, 1999.
  • Agrewala, J.N. and Wilkinson, R.J. Influence of HLA-DR on the phenotype of CD4+ T lymphocytes specific for an epitope of the 16-kD alpha-crystalline antigen of Mycobacterium tuberculosis. Eur. J. Immunol., 29, 1753-1761, 1999.
  • Kundu, B. and Guptasarma, P. A Hydrophobic dye inhibits aggregation of molten carbonic anhydrase during thermal unfolding and refolding. Proteins, 37, 321-324, 1999.
  • Chaudhary, Anita; Vasudha, S.; Rajgopal, K.; Sudha-Komath, Sneha; Garg, N.; Yadav, Mahavir; Mande, S.C. and Sahni, G. Function of the central domain of Streptokinase in substrate plasminogen docking and processing revealed by site-directed mutagenesis. Protein Sci., 8, 2791-2805, 1999.
  • Walia, K.; Ghosh, S.; Singh, H.; Nair, G.B.; Ghosh, Amit; Sahni, G.; Vohra, H. and Ganguly, N.K. Purification and characterisation of novel toxin produced by V. cholerae 01. Infect. Immun., 67, 5215-5222, 1999.
  • Thakur, A.K.; Ashish & Kishore, R. Novel hydrogen bonding ring motifs in a model peptide: Crystal & molecular confirmation. Chem. Comm., 1643-1644, 1999.
  • Chopra, Rohini; Sharma, Vishva Mitra and Ganesan, K. Elevated growth of Saccharomyces cerevisiae ATH1 null mutants on glucose is an artifact of non-matching auxotrophies of mutant and reference strains, Appl. Environ. Microbiol., 65, 2267-2268, 1999.
  • Taneja, B. and Mande, S.C. Conserved structural features and sequence patterns in the GroES fold family. Prot. Eng., 12, 815-818, 1999.
  • Das, G.; Vohra, H.; Saha, B.; Agrewala, J.N. and Mishra, G.C.Apoptosis of Th1-like cells in experimental tuberculosis. Clin. Exp. Immunol., 115, 324-328, 1999.
  • Thakur, A. and Kishore, R. An all-anti conformation of the b -Ala moiety in crystalline state. Tetrahedron Lett., 40, 5091-5094, 1999.
  • Kaur, Rupinder and Bachhawat, A.K. The yeast multidrug resistance pump, Pdr5p, confers reduced drug resistance in erg mutants of Saccharomyces cerevisiae, Microbiology, 145, 809-818, 1999.
  • Ingavale, S.S. and Bachhawat, A.K. Restoration of inositol prototrophy in fission yeast Schizosaccharomyces pombe. Microbiology, 1999.
  • Ashish; Banumathi, S.; Velmurugan, D.; Anushree and Kishore, R. Induced conformational preferences in a non-chiral b -Ala residue: X-ray diffraction, 1H NMR, FT-IR and CD studies of Boc- b -Ala-D-Ala-NHCH3 and Boc- b -Ala-L-Ala-NHCH3. Tetrahedron, 55, 1999, 13791-13804.
  • Chakraborti, P.K.; Bhatt, K.; Banerjee, S.K. and Misra, P.Role of ABC imposter in Mycobacterial drug resistance. Bioscience Rep., 19, 293-300, 1999.
  • Mehta, R.K. and Singh, J. A bridge-overlap extension PCR method for constructing chimeric genes. Biotechniques, 26, 1080-1086, 1999.
  • Jyot, Jeevan; Gautam, J.K.; Raje, Manoj and Ghosh, Amit. Localization of DNAK & GroEL in Vibrio cholerae. FEMS Microbiol. Lett., 172, 165-171, 1999.
  • Patnaik, P.R. Application of neural networks to the recovery of biological products. Biotechnol. Adv., 17, 477-488, 1999.
  • Thungapathra, M.; Sharma, C.; Gupta, N.; Ghosh, R.K.; Mukhopadhyay, A.; Kole, H.; Nair, G.B. and Ghosh, Amit. Construction of a recombinant live oral vaccine from a non- toxigenic strain of V. cholerae 01 serotype Inaba biotype EL Tor and assessment of reactogenicity and immunogenecity in the rabbit model. Immunol. Lett., 68, 219-227, 1999.
  • Samanta, S.K.; Chakraborti, A.K. and Jain, R.K.Degradation of phenanthrene by different bacteria: Evidence for novel transformation sequences involving the formation of 1- naphthal. Appl. Microbiol. Biotechnol., 53, 97-108, 1999.
  • Sani, R.K. and Banerjee, U.C.Decolorization of triphenylmethane dyes and textile and dye-stuff effluents by Kurthia sp. Enzy. Microbial Tech., 24, 433-437, 1999.
  • Raghavendra, V.; Agrewala, J.N. and Kulkarni, S.K. Role of centrally administered melatonin and inhibitors of COX and NOS in LPS-induced hyperthermia and adipsia. Prostaglan. Leuko. Ess. Fatty Acids, 60, 249-253, 1999.
  • Goel, Apollina; Harpeet, Vohra and Varshney, Grish C. Strain specific recognition of live Leishmania donovani promastigotes by homologous antiserum raised against a crude membrane fraction of infected macrophages. Parasitol. Res., 85, 19-24, 1999.
  • Banerjee, U.C.; Sani, R.K.; Azmi, Wamik and Soni, Raman. Thermostable alkaline protease from Bacillus brevis and its characterization as a laundry detergent additive. Process Biochem., 1999.
  • Patnaik, P.R. Penicillin fermentation revisited: A topological analysis of kinetic multiplicity. Process Biochem., 34, 737-743, 1999.
  • Patnaik, P.R. Improvement of the microbial production of streptokinase by controlled filtering of process noise. Process Biochem., 35, 309-315, 1999.
  • Singh, Jasvir; Vohra, R.M. and Sahoo, D.K. Alkaline protease from a new obligate alkalophilic isolate of Bacillus sphaericus. Biotechnol. Lett., 21, 921-924, 1999.
  • S, Jasvir; Gill, N.; Devasahayam, G. and Sahoo, D.K. Studies on alkaline protease produced by Bacillus sp. NG312. Appl. Biochem. Biotechnol., 76, 57-63, 1999.
  • Patnaik, P.R. Spectral analysis of a nonideal bioreactor for a recombinant fermentation with run-away plasmids. Bioprocess Engng., 20, 31- 36, 1999.
  • Patnaik, P.R. Transient sensitivity analysis of a cybernetic model of microbial growth on two substrates. Bioprocess Engng., 21, 135-140, 1999.
  • Awasthi, N.; Kumar, A.; Makkar, R. and Cameotra, Swaranjit Singh. Biodegradation of soil-applied endosulfan in the presence of a biosurfactant. J. Environ. Sci. Health, 34, 793-803, 1999.
  • Nayak, D.P. and Vyas, V.V. Stability and expression of a recombinant shuttle plasmid in Escherichia coli during fedbatch cultivation. World J. Microbiol. Biotechnol., 1999.
  • Banumathi, S.; Velmurugan, D.; Subramanian, E.; Ashish & Kishore, R. Tert-Butoxycarbonyl-L-Leucyl-L-threonin-amide. Acta. Cryst. C 55, 78-79, 1999.
  • Patnaik, P.R. Coupling of a neural filter and a neural controller for improvement of fermentation performance. Biotechnol. Tech., 13, 735-738, 1999.
  • Sani, R.K.; Chakraborti, S.; Sobti, R.C.; Patnaik, P.R. and Banerjee, U.C. Characterization and some reaction engineering aspects of thermostable extracellular b -galactosidase from a new Bacillus sp. Folia Microbiologica, 44, 121-125, 1999.
  • Singh, J.Mating type switching in fission yeast- A unique model for devlopment & differentiation. Current Science, 77, 1262-1272, 1999.
  • Guptasarma, P. Proposing T-independent B-cell activation by prion rods. Could disease result from ‘chaperoningÂ’ of nascent prions by PrPsc-cognate immunoglobulins?. Current Science, 77, 508-514, 1999.
  • Patnaik, P.R. Plasmid stability in a non-homogeneous bioreactor for a recombinant fed-batch fermentation. Can. J. Chem. Engng., 77, 602-607, 1999.
  • Kothekar, V.; Ashish; Gupta, D. and Kishore, R. Theoretical study of conformational flexibility of tuftsin in vaccum and in aqueous environment. Ind. J. Biochem. Biophy., 36, 14-28, 1999.
  • Patnaik, P.R. Reactive extraction with liquid emulsion membranes: The finite reaction zone concept. React. Kinet. Catal. Lett.,68, 347-354, 1999.
  • Patnaik, P.R. Fractal analysis of a recombinant fermentation with imperfect mixing and disturbances. Hung. J. Ind. Chem., 27, 175-178, 1999.
  • Kumar, Ish and Jolly, R.S. Effect of alpha-methyl substituent on chemoselectivity in esterase catalyzed hydrolysis reaction. Org. Lett., 1, 607-610, 1999.
  • Makkar, R.S. and Cameotra, Swaranjit Singh. Biosurfactant production by microorganisms on unconventional carbon sources. J. Surfactants Detergents, 2, 237-241, 1999.
  • Makkar, R.S. and Cameotra, Swaranjit Singh. Structural characterization of a biosurfactant produced by Bacillus subtilis at 45? C. J. Surfactants Detergents, 2, 367-372, 1999.
  • Kumar, R.; Jolly, R.S. and Banerjee, U.C. Reduction of gentian violet dye by Kurthia sp. and evaluation of toxicity. Adv. Environ. Res., 368, 1999.
  • Stark, B.C.; Webster, D.A. and Dikshit, K.L. Vitreoscilla hemoglobin molecular biology, biochemistry and practical applications. Rec. Res. Dev. Biotechnol. Bioeng., 2, 155-174, 1999.
  • Sani, R.K. and Banerjee, U.C. Decolorization of Acid Green 20, a textile dye by white rot fungus, Phanerochaete chrysosporium in low cost medium. Adv. Environ. Res., 2, 485-495, 1999.
  • Sani, R.K. and Banerjee, U.C. Screening of organisms applicable to the decolorization of triphenylmethane dyes and optimization of biotransformation conditions in stirred tank reactor. Ind. J. Env. Ecoplan., 2, 1-9, 1999.
  • Azmi, Wamik and Banerjee, U.C. Decolorization of triphenylmethane dyes by the growing and resting cells of Bacillus sp. Ind. J. Env. Ecoplan, 2, 241-246, 1999.
  • Sani, R.K.; Jolly, R.S. and Banerjee, U.C. Reduction of gentain violet to leucogentian violet by Kurthia sp. and assessment of toxicity. Adv. Environ. Res., 3, 368-377, 1999.
  • Naresh KumarLife form patenting: A case for setting up International Depositary Authorities in India. J. Intellec. Prop. Rights, 4, 8-15, 1999.
  • Patnaik, P.R. Bistability of stationary states during competition between plasmid-bearing and plasmid-free cells under selection pressure. Trans. Inst. Chem. Engrs., 77, Part-C, 243-247, 1999.
  • Patnaik, P.R. Neural control of an imperfectly mixed fed-batch bioreactor for recombinant beta-galactosidase. Biochem. Engng. J., 3, 113-120, 1999.
  • Goel, A.; Jain, M. and Varshney, G.C. Homologous antiserum raised against crude membrane fraction of Leishmania donovani infected macrophages inhibits promastigote growth in vitro. J. Parasitic Diseases, 23, 133-134, 1999.
  • Garg, P.; Basu, A.; Ramamurthy, T.; Sharma, C.; Maiti, S.; Ghosh, Amit; Bhattacharyya, S.K.; Takeda, Y. and Nair, G.B. Emerging clones of V. cholerae and multi drug resistance. In “Emerging and re-emerging diseases” (Mahajan, R.C. and Therwath, A. eds.), Indian National Science Academy, New Delhi, pp. 31-42.
  • Ghosh, Amit; Thungapathra, M.; Sharma, C.; Gupta, N.; Ghosh, R.K.; Mukhopadhyay, A.; Kole, H. and Nair, G.B. Efforts towards the development of oral cholera vaccines in India against the backdrop of global endeavours in “Diarrhoeal Diseases- Research Perspectives” (Appaji Rao, N. and Ganguly, N.K. eds), Indian National Science Academy and Narosa Publishing House, New Delhi, pp. 1-16.
  • P. Savita; Raha, K.; Annapurna, P.S.; Kaur, S.; Islam, Najmul; Zaman, S.; Raje, M.; Dubey, A.B.; Jain, N.K.; Kothekar, V.; Tyagi, J.S. and Prasad, H.K. Chapter on “DNA binding protein HLPMt of Mycobacterium tuberculosis: A target of human immune response”. In Immunomodulation, ed. S.N. Upadhyay, Narosa Publishing House, New Delhi, 1999.
  • Chakraborti, P.K.; Banerjee, S.K.; Bhatt, K.; Misra, P. and Rana, S. Mechanism of drug resistance: Novel role of phosphate specific transporter. In Drug Resistance: Mechanisms and Management. (eds. R.L. Singhal and O.P. Sood), Communicore, Ranbaxy Science Foundation, New Delhi, India, pp. 22-25, 1999.
  • Sobti, R.C.; Kaushal, A. and Banerjee, U.C. Textile dyes: Their toxicity and the role of natural and genetically engineered microbes in their biodegradation. In Trends in Environmental Mutagenesis, Tausco Book Publishers, New Delhi, 1999.

1998

  • Kimsey, Harvey, H.; Nair, G. Balakrish; Ghosh, Amit and Waldor, Matthew, K. Diverse CTXfs and evolution of new pathogenic Vibrio cholerae. Lancet, 352, 457-458, 1998.
  • Singh, J.; Goel, Vintoo and Klar, Amar J.S. A novel function of the DNA repair gene rhp6 in mating type silencing by chromatin remodeling in fission yeast. Mol. Cellular Biol., 18, 5511-5522, 1998.
  • Agrewala, Javed N.; Suvas, S.; Verma, R.K. and Mishra, G.C. Differential effect of anti-B7.1 and anti-M150 antibodies in restricting the delivery of costimulatory signals from B cells and macrophages. J. Immunol., 160, 1067-1077, 1998.
  • Nihalani, D.; Kumar, R.; Rajagopal, K. and Sahni Girish. Role of the amino-terminal region of streptokinase in the generation of a fully functional activator complex probed with synthetic peptides. Protein Science, 7, 637-648, 1998.
  • Sharma, Charu; Ghosh, Amit; Dalsgaard, A.; Forslund, A.; Ghosh, R.K.; Bhattacharyya, S.K. and Nair, G.B. Molecular evidence that a distinct V. cholerae 01 biotype E1 Tor strain in Calcutta may have spread to the African Continent. J. Clin. Microbiol., 36, 843-844, 1998.
  • Sharma, Charu; Thungapathra, M; Ghosh, A.; Mukhopadhyaya, A.K.; Basu, A.; Mitra, R.; Basu, I.; Bhattacharya, S.K.; Shimada, T.; Ramamurthy, T.; Takeda, T.; Yamasaki, S.; Takeda, Y. and Nair, G.B. Molecular analysis of non-01, non-0139 V. cholerae associated with an unusual upsurge of the incidence of cholera like disease in Calcutta, India. J. Clin. Microbiol., 36, 756-763, 1998.
  • Mukhopadhyay, A.K.; Basu, A.; Garg, P.; Ghosh, Amit; Bhattacharyya, S.K.; Takeda, Y. and Nair, G.B. Molecular epidemiology of the re-emerged Vibrio cholerae 0139 Bengal in India. J. Clin. Microbiol., 36, 2143-2152, 1998.
  • Ingavale, S.S.; Kaur, Rupinder; Aggarwal, Parul and Bachhawat, A.K. A minisatellite sequence within the propeptide region of the vacuolar carboxypeptidase Y gene of Schizosaccharomyces pombe. J. Bacteriol., 180, 3727-3729, 1998.
  • Banerjee, S.K.; Misra, P.; Bhatt, K.; Mande, S.C. and Chakraborti, P.K. Identification of an ABC transporter gene that exhibits m-RNA level overexpression in fluoroquinolone resistant Mycobacterium smegmatis. FEBS Lett., 425, 151-156, 1998.
  • Joshi, M.; Mande, S.C. and Dikshit K.L. Hemoglobin biosynthesis in Vitreoscilla stercoraria DW: Cloning, expression and characterisation of a new homolog of bacterial globin gene. Appl. Environ. Microbiol., 64, 2220-2228, 1998.
  • Pratap, J. and Dikshit, K.L. Effect of signal peptide changes on the extracellular processing of streptokinase from E.coli: Requirement of secondary structure at the cleavage junction. Mol. Gen. Genet., 258, 326-333, 1998.
  • Agrewala, Javed N.; Kumar, B. and Vohra, H. Potential role of B7.1 and CD28 molecules in immunosuppression in leprosy. Clin. Exp. Immunol., 111, 56-63, 1998.
  • Shaji, A.V.; Kulkarni, S.K. and Agrewala, Javed N. Regulation of secretion of IL-4 and IgG1-isotype by melatonin stimulated ovalbumin specific T cells. Clin. Exp. Immunol. 111, 181-185, 1998.
  • Agrewala, J.N. and Wilkinson, R.J. Differential regulation of Th1 and Th2 cells by p91-110 and p21- 40 peptides of the 16-kd alpha-crystalline antigen Mycobacterium tuberculosis. Clin. Exp. Immunol., 114, 392-397, 1998.
  • Dikshit, K.L.; Orri, N.; Navani, N.; Patel, S.; Stark, B.C. and Webster, D.A. Site directed mutagenesis of bacterial hemoglobin: Role of glutamine (E7) in oxygen binding in the distal heme pocket. Arch. Biochem. Biophys., 349, 161-166, 1998.
  • Kishore, R. and Thakur, A. An Observation of a folded b-Ala Conformation in a model peptide: Boc-L-Pip-b-Ala-NHCH3, X-ray diffraction study. Tetrahedron Lett., 39, 9553-9556, 1998.
  • Kumar, Kamal and Jolly, R.S. Catalysis of intramolecular [4+2] cycloaddition by palladium complexes. Tetrahedron Lett., 39, 3047-3050, 1998.
  • Rana, S.; Bisht, D. and Chakraborti, P.K. Activation of rat androgen receptor by androgenic ligands is unaffected by antiandrogens in Saccharomyces cerevisiae. Gene, 209, 247-254, 1998.
  • Agrewala, J.N.; Suvas, S.; Joshi, A.; Bhatanagar, A.; Vinay, D.S. and Mishra, G.C. M150 modulates the costimulatory signals delivered by B cells to T cells and enhances their ability to help B cells.J. IFN. Cyto. Res., 18, 297-304, 1998.
  • Basu, A.; Mukhopadhyay, A.K.; Sharma, C.; Jeevan Jyot; Gupta, N.; Ghosh, Amit; Bhattacharya, S.K.; Takeda, Y.; Faruque, A.S.G.; Albert, M.J. and Nair, G.B. Heterogeneity in the organization of the CTX genetic element in strains of V. cholerae 0139 Bengal isolated from Calcutta, India and Dhaka, Bangladesh and the possible link to the dissimilar incidence of 0139 cholerae in the two locally. Microbial Pathogenesis, 24, 175-183, 1998.
  • Bag, P.K.; Maiti, S.; Sharma, C.; Ghosh, Amit; Mukhopadhyay, A.K.; Basu, A.; Mitra, R.; Takeda, Y.; Bhattacharyya, S.K. and Nair, G.B. Rapid spread of the new clone of V. cholerae 01 EL Tor in cholera epidemic cases in India. Epidemiol. Infection, 121, 245-251, 1998.
  • Mohapatra, B.R.; Banerjee, U.C. and Bapuji, M. Characterization of a fungal amylase from Mucor sp. associated with the marine sponge Spirastrella sp. J. Biotechnol., 60, 113- 117, 1998.
  • Das, G.; Vohra, H.; Saha, B.; Agrewala, J.N. and Mishra, G.C. Leishmania donovani infection of a susceptible host result in apoptosis of Th1-like cells: rescue of anti-leishmanial CMI by providing Th1-specific bystander costimulation. Microbiol. Immunol., 42, 795-801, 1998.
  • Samanta, S.K.; Mamta Rani and R.K. Jain. Segregational and structural instability of a recombinant plasmid carrying genes for naphthalene degradation. Lett. Appl. Microbiol., 26, 265-269, 1998.
  • Makkar, Randhir S. and Cameotra Swaranjit S. Production of biosurfactant at mesophilic and thermophilic conditions by a strain of Bacillus subtilis. J. Ind. Microbiol. Biotechnol., 20, 48-52, 1998.
  • Sani, Rajesh Kumar; Azmi, Wamik and Banerjee U.C. Comparison of static and shake cultures in the decolourisation of textile dyes and dye effluent by Phanerochaete chrysosporium. Folia Microbiologica, 43, 85-88, 1998.
  • Mohapatra, B.R.; Bapuji, M. and Banerjee, U.C. Production and properties of L-asparaginase from Mucor sp. associated with the marine sponge Spirastrella sp. Cytobios, 92, 165-173, 1998.
  • Azmi, Wamik; Sani, R.K. & Banerjee, U.C. Biodegradation of triphenylmethane dyes. Enzy. Microbial. Tech., 22, 185-191, 1998.
  • Agrewala, J.N.; Upma and Banyal, H.S. A 24,000g sediment of Plasmodium berghei induces IL-1 response in mice and exhibits protection against malaria infection. Parasit. Hung., 31, 13-21, 1998.
  • Chaudhary, Anita; Gupta, L.K.; Gupta, J.K. & Banerjee, U.C. Levanase- a better control of slime problem in paper industry. Biotechnol. Adv., 16, 899-9122, 1998.
  • Patnaik, P.R. Dispersion-induced behavior in sub-critical operation of a recombinant fed-batch fermentation with run-away plasmids. Bioprocess Engng., 18, 219-226, 1998.
  • Patnaik, P.R. Analysis of the effect of interruptions in substrate inflow on a fed-batch fermentation with recombinant bacteria. Biochem. Eng. J., 1, 121-129, 1998.
  • Patnaik, P.R. A sufficiency analysis of asymptotic stability in continuous recombinant fermentation with auxotrophic mutants. Biochem. Engng. J., 2, 157-160, 1998.
  • Swaranjit Singh and Makkar, R.S. Synthesis of biosurfactants in thermophilic conditions. Appl. Microbiol. Biotechnol., 50, 520-529, 1998,
  • Singh, V.; Raje, M.; Nain, C.K. and Singh, K. Routes of transmission in the hepatitis E epidemic of Saharanpur. Trop Gastroenterol., 19, 107-9, 1998.
  • Raje, Manoj and Mishra, G.C. Autoradiography. Invited chapter in Encyclopedia of Immunology. 2nd Edition, ed. Peter J. Deves and Ivan M. Roitt. Academic Press Ltd., 296-300, 1998.
  • Patnaik, P.R. Recovery of biological products by liquid emulsion membranes. Bioseparation & Bioprocessing, Wiley-VCH (1998) Ch. 11.
  • Patnaik, P.R. Neural network applications to fermentation processes. Bioseparation & Bioprocessing, Wiley-VCH (1998) Ch. 14.

1997

  • Kaur, A.; Ingavale, S.S. and Bachhawat, A.K. PCR-mediated direct gene disruption in Schizosaccharomyces pombe. Nucleic Acid Res., 25, 1080-1081, 1997.
  • Vandana Sharma; Manoj Raje and Krishnasastry, M.V. The role of the amino terminus in the kinetics and assembly of alpha-hemolysin of Staphylococcus aureus. J. Biol. Chem., 272, 24858-24863, 1997.
  • Sharma, Charu; Nair, G.B.; Mukhopadhyay, A.K.; Bhattacharya, S.K.; Ghosh, R.K. and Ghosh, Amit. Molecular characterization of Vibrio cholerae 01 Biotype ElTor strain isolated between 1992 and 1996 in Calcutta India: Evidence for the emergfence of a new clone of the ElTor biotype. J. Infect. Dis., 175, 1134-1141, 1997.
  • Chaudhuri, B; Ingavale, S.S. and Bachhawat, A.K. apdl+, a gene required for red pigment formation in ade6 mutant of Schizosaccharomyces pombe encodes an enqyme required for glutathione biosynthesis: A role for glutathione and a glutathione-conjugate pump. Genetics, 145, 75-83, 1997.
  • D. Nihalani; G.P.S. Raghava and Girish Sahni. Mapping of the plasminogen binding site of streptokinase with short synthetic peptides. Protein Science, 6, 1284-1292, 1997.
  • Sharma, Charu; Maiti, Sankar; Mukhopadhyay, A.K.; Basu, A.; Basu, I.; Nair, G.B.; Mukhopadhyaya, R.; Das, B.; Kar, S.; Ghosh, R.K. and Ghosh, Amit. Unique organization of the CTX genetic element in V. cholerae 0139 strains which reemerged in Calcutta, India in September 1996. J. Clin. Microbiol., 35, 3348-3350, 1997.
  • Ashish and Kishore, R. Thermodynamic characterizations of an intramolecularly hydrogen bonded C5-structure across proteinogenic residue. FEBS Lett., 417, 97-100, 1997.
  • Sharma, R. and Vohra, R.M. A thermostable D-hydantoinase isolated from a mesophilic Bacillus sp. AR9. Biochem. Biophys. Res. Commun., 234, 485-488, 1997.
  • Agrewala, J.N.; Deacock, S.; Jurcevic, S. and Wilkinson, R. Peptide recognition by T cell clones of HLA-DRB1*1501/*0901 heterozygous donor is promiscuous only between parental alleles is limited to parental HLA-DR alleles. Human. Immunol., 55, 34- 38, 1997.
  • Ashish and Kishore, R. 1H NMR spectroscopic signatures of an intraresidue hydrogen bonded C5 structure. Tetrahedron Lett., 38, 2767-2770, 1997.
  • Pitchappan, R.M.; Agrewala, J.N.; Dheenadhayalan, V. and Ivanyi, J. Major histocompatibility complex restriction in tuberculosis susceptibility. J. Biosci., 221, 47-57, 1997.
  • Vikas Pruthi and Cameotra, Swaranjit Singh. Identification of biosurfactant production by bacterial strains using cell surface hydrophobicity techniques. Biotechnol. Techniques, 11, 671-674, 1997.
  • Randhir S. Makkar and Cameotra, Swaranjit Singh. Utilization of molasses for biosurfactant production by two Bacillus strains at thermophilic conditions. J. American Oil Chemists Society, 74, 887-889, 1997.
  • Pruthi, V. and Cameotra, Swaranjit Singh. Production of a biosurfactant exhibiting excellent emulsification and surface active properties by Serratia marcescens. World J. Microbiol. Biotechnol., 13, 137-139, 1997.
  • Pruthi, V. and Cameotra, Swaranjit Singh. Production and properties of a biosurfactant synthesized by Arthrobacter protophormiae- an Antarctic strain. World J. Microbiol. Biotechnol., 13, 133-135, 1997.
  • P.R. Patnaik Influence of Macromixing on Plasmid Stability during Batch Fermentation with Recombinant Bacteria. Ind. J. Chem. Technol., 4, 291-297, 1997.
  • P.R. PatnaikA recurrent neural network for a fed-batch fermentation with recombinant E.coli subject to inflow disturbances. Process Biochemistry, 32, 391-400, 1997.
  • P.R. PatnaikSpectral analysis of the effect of inflow noise on a fed-batch fermentation for recombinant beta-Galactosidase. Bioprocess Engng., 17, 93-97, 1997.
  • P.R. PatnaikArtificial intelligence as a tool for automatic state estimation and control of bioreactors. Lab Robotics Automation, 9, 297-304, 1997.
  • P.R. PatnaikPrincipal component analysis of the effect of inflow disturbances on recombinant beta-galactosidase fermentation. Hung. J. Indl. Chem., 25, 261-264, 1997.
  • P.R. PatnaikApplication of fuzzy logic for state estimation of a microbial fermentation with dual inhibition and variable kinetics. Trans. Inst. Chem. Engrs. Part-C, 75, 239-246, 1997.
  • Chaudhary, Anita; Gupta, L.K.; Gupta, J.K. and Banerjee, U.C. Study of slime forming organisms of a paper mill-slime production, characterization and control. J. Indus. Microbiol. Biotech., 18, 348-352, 1997.
  • Mudgal, P.S.; Varshney, G.C. and Anand, S.R. Histone kinase activity of buffalo sperm chromatin. Arch. Androl., 38, 191-200, 1997.
  • Choudhury, A.; Goel, A.; Raje, M.; Vohra, H. and Varshney, G.C. Recognition of the parasite infected cell surface determinants by homologous antiserum raised against infected cell membranes. Parasitol. Res., 83, 747-754, 1997.
  • Makkar, R.S. and Cameotra, Swaranjit Singh. Biosurfactant production by a thermophilic Bacillus subtilis strain. J. Ind. Microbiol. Biotechnol., 18, 37-42, 1997.
  • Guptasarma, P. Resolving multiple protein conformers in equilibrium unfolding reactions : A time-resolved emission spectroscopic study of azurin. Biophys. Chem., 65, 221-228, 1997.
  • Radha Kishan, K.V.; Giorgio, Scita; William, T. Wong; Pier Paolo Di Fiore and Marcia, E. Newcomer.The SH3 domain of Eps8 exists as a novel intertwined dimmer. Nature Str. Biol., 4, 739–743, 1997.
  • Sidhu, G.S.; Sharma, P.; Chakrabarti, T. and Gupta, J.K. Strain improvement for the production of a thermostable a-amylase. Enz. Microbial. Technol., 21, 525-530, 1997.
  • Bhui, A.J.; Bureau, J.P.; Parikh, V.A.; Scherrer, K.; Kukreti, R.; Mondal, A.K. and Therwat. A. Proliferation markers and cell cycle associated expression of prosomes in breast cancers of Parsis and non-Parsis. Int. J. Oncology, 11, 297-304, 1997.
  • Verlinde, C.L.M.J.; Kin, H.; Bernstein, B.; Mande, S.C. and Hol, W.G.J.Antitrypanosomiasis drug development based on structures of glycolytic enzymes. In:Structure-based drug design (Ed.) P. Veerapandian, Marcel Dekker Inc., New York, pp. 365-394, 1997.

1996

  • Agrawal, P.; Latha, S. and MahadevanA. Utilization of phenylalanine and phenylacetic acid by Pseudomonas solanacearum. App. Biochem. Biophysics, 61, 379-391, 1996.
  • Agrewala, J.N.; Owais, M.; Gupta, C.M. and Mishra,G.C. Antigen incorporation into liposomes results in the enhancement of IL-4 and IgG-1 secretion: An evidence for preferential expansion of Th-2 cells. J. Cytokine Mol. Ther., 2, 59-65, 1996.
  • Ananthapadmanaban, D. Commentary on: "Thermostability of B-xylosidase from Aspergillus sydowii MG49 by M. Ghosh and G. Nanda, FEBS Letters, 330, 275-278 (1993)" FEBS Letters, 385, 244, 1996.
  • Arora, A. and Gupta, C.M. Glycerol backbone conformation in phosphatidylcholines is primarily determined by the intramolecular stacking of the vicinally arranged acyl chains. Biochim. Biophys. Acta, 1324, 47-60, 1996.
  • Arora, A. and Gupta, C.M. Novel thermal phase transition properties of phosphatidylcholine analogs containing 1,2,4-butanetriol as their backbone. Biochim. Biophys. Acta, 1324, 61-68, 1996.
  • Weller, U.; Muller, L.; Messer, M.; Valeva, A.; Tranum-Jensen, J.; Agrawal, P.; Biermann, C.; Biermann, C.; Bobereiner, A.; Kohoe, M.A. and Bhakdi, S. Expression of active streptolysin-O in E. coli as a maltose binding protein Streptolysin-O fusion protein. Eur. J. Biochem., 236, 34-39, 1996.
  • Balasubramanian, K. and Gupta, C.M. Transbilayer phosphatidylethanolamine movements in yeast plasma membrance. Evidence for protein-mediated energy dependent mechanism(s). Eur. J. Biochem., 240, 798-806, 1996.
  • Sharma, C.; Nair, G.B.; Mukhopadhyay, A.K.; Bhattacharya, S.K.; Ghosh, R.K. and Ghosh, Amit. Molecular characterization of Vibrio cholerae 01 Biotype EITor strain isolated between 1992 and 1995 in Calcutta, India: Evidence for the emergence of a new clone of the EITor biotype. J. Infect. Dis., 175, 1134-1141, 1996.
  • Bandhu, H.K.; Puri, Sanjiv; Shahi, J.S.; Garg, M.L.; Nirmal Singh; Mandal P.C.; Suri, C.R. & Trehan, P.N. An evaluation of the sources of air pollution in the city of Chandigarh, India. Nucl. Inst. Meth. B, 141, 341-344, 1996.
  • Banerjee, U.C. and Patnaik, P.R. Kinetic analysis of the enzymatic conversion of rifamycin B to rifamycin S. Indian Chem. Engr., 38, 28-30, 1996.
  • Banerjee, Sanjiban K.; Bhatt, Kamlesh; Rana Seema; Misra, Parimal and Chakraborti, P.K. Involvement of an efflux system in mediating high level of fluoroquinolone resistance in Mycobacterium smegmatis. Biochem. Biophys. Res. Commun., 226, 362-368, 1996.
  • Chaudhary, Anita; Gupta, L.K.; Gupta, J.K. and Banerjee, U.C. Production of levanase-a slime hydrolyzing enzyme by Rhodotorula sp. Folia Microbiologica, 41, 353-356, 1996.
  • Chaudhary, Anita; Gupta, L.K.; Gupta, J.K. and Banerjee, U.C. Purification and properties of levanase from Rhodotorula sp. J. Biotech., 46, 55-61, 1996.
  • Ghei, S.K.; Sengupta, U.; Agrewala, J.N.; Kailash, S. (et. al.) Association of HLA antigens with leprosy,p. 273-278. In Singh, J.(eds), Current Concepts in Human Genetics. Guru Nanak Dev University, Amritsar, 1996.
  • Ghosh, A., Thungapatra, M. and Ghosh, R.K. Strategies for production of a potential candidate vaccine for cholera. Indian J. Med. Res., 104, 60-75, 1996.
  • Gupta, Reena; Dogra, Nisha; Raje, Manoj and Majumdar, Sekhar. Attempts to characterize the mechanisms involved in the growth inhibition of Mycobacterium microti in interferon-g or tumor necrosis factor-a activated J774A.1 cells. FEMS Microbiol. Lett., 140, 171-178, 1996.
  • Jain, R.K. The molecular cloning of genes specifying some enzymes of the 3,5-xylenol degradative pathway. Applied Microbiol. Biotechnol., 45, 502-508, 1996.
  • Jitesh Pratap; Jagdeep Kaur; Rajamohan, G.; Dawinder Singh & Dikshit, K.L. Role of N-terminal domain of streptokinase in protein transport. Biochem. Biophys. Res. Commun., 227, 303-310, 1996.
  • Jurcevic, Stipo; Travers, P.J.; Hills, A.; Agrewala, J.N.; Morena, C. and Ivanyi, J. Distinct conformations of a peptide bound to HLA-DR1 or DRB5*0101 suggested by molecular modelling. Intern. Immunol., 8, 1807-1814, 1996.
  • Kar, S.; Ghosh, R.K.; Ghosh, A.N. and Ghosh, Amit. Integration of a novel filamentous bacteriophage VSK from V. cholerae 0139 into the host chromosomal DNA. FEMS Microbiol. Lett., 145, 17-22, 1996.
  • Kishore Raghuvansh. Identification of novel stereogeometrical features in B-Ala residue. Tetrahedron Lett., 37, 5747-5750, 1996.
  • Mainfroid Veronique; Terpstra, Peter; Beauregard, March Frere; Jean-Marie; Mande, S.C.; Hol, Wim G.J.; Martial, Joseph A. and Goraj, Karine. Three hTIM mutants that provide new insights on why TIM is a Dimer. J. Mol. Biol., 257, 441-456, 1996.
  • Maingroid, Veronique; Mande, S.C.; Hol, Wim G.J.; Martial, Joseph A. and Goraj, Karine. Stabilization of human triosephosphate isomerase by improvement of the stablilty of individual- Helices in dimeric as well as monomeric forms of the protein. Biochem., 35, 4110-4117, 1996.
  • Mamta Rani; Prakash Dhan; Sobti, R.C. and Jain R.K. Plasmid mediated degradation of o-phthalate and salicylate by Moraxella sp. Biochem. Biophys. Res. Commun., 220. 377-381, 1996.
  • Mande Sekhar C.; Mehra, Vijay; Bloom, Barry R., Hol. Wim G.J. Structure of the heat shock protein chaperonin-10 of Mycobacterium leprae. Science, 271, 203-207, 1996.
  • Mohapatra, B.R.; Sani, R.K. and Banerjee, U.C. Characterization of L-asparaginase from Bacillus sp. isolated from intertidal marine alga (Sargassum sp.). Lett. Appl. Microbiol., 21, 380-383, 1996.
  • Moo-Young, M.; Chisti, Y.; Zhang, Z.; Garrido, F.; Banerjee, U.C. and Vlach, D. Recombinant DNA Biotechnolgy III: The integration of Biological and Engineering Sciences, Edited by Juan A. Asenjo and Barbara A. Andrews, The New York Academy of Sciences,New York, USA. Annals of the New York Academy of Sciences, 782, 391-401, 1996.
  • Navani, Naveen K.; Joshi, Meenal A. and Dikshit K.L. Genetic transformation of Vitreoseilla sp. Gene, 117, 265-266, 1996.
  • Panda, S.K.; Nanda, S.K.; Ghosh, Amit; Sharma, C.; Shivaji, S. et. al. The 1994 plague epidemic of India: Molecular diagnosis and characterization of Y. pestis isolates from Surat and Beed. Curr. Sci., 71, 794-799, 1996.
  • Patnaik, P.R. Incomplete mixing in large bioreactors- A study of its role in the fermentative production of streptokinase. Bioprocess Engg., 14, 91-96, 1996.
  • Patnaik, P.R. Neural network applications in the selective separation of biological products. Ind. J. Chem. Tech., 3, 11-16, 1996.
  • Patnaik, P.R. (1996). A Vuietic model for enzymatic couvebconi of rifamycu's by rifamyci oxidase from Curvtara luata. Ted.Chem. engr.38, 28-30.
  • Patnaik, P.R. Preliminary screening of neural network configurations for bioreactor applications. Biotech. Tech., 10, 967-970, 1996.
  • Patnaik, P.R. Imperfect mixing in a batch bioreactor for a class of microbial reactions with dual inhibition performance analysis for two methods of inoculation. Advances in Chemical Engg., Allied Publishers, New Delhi. 335-340, 1996.
  • Patnaik, P.R. On the role of reactive diffusion and pellet shape in the conversion of rifamycin B to rifamycin S by immobilised rifamycin oxidase. Hung J. Indl. Chem., 24, 193-197, 1996.
  • Patnaik, P.R. Neural simulation of an unsteady state continuous recombinant fermentation with imperfect mixing . Biotechnol Tech., 10, 573-578, 1996.
  • Patnaik, P.R. A recurrent neural network for a fed-batch fermentation with recombinant E. coli subject to inflow disturbances. Process Biochem., 37, 391-400, 1996.
  • Patnaik, P.R. Spectral analysis of the effect of inflow noise on a fed batch fermentation for recombinant B-Galactosidase. Bioprocess Engg., 17, 93-97, 1997.
  • Patnaik, P.R. Start-up sensitivity to the initial state of a batch bioreactor for a recombinant E. coli in a complex medium. Bioprocess Engg., 15, 215-219, 1996.
  • Prakash, Dhan; Chauhan, Ashvini and Jain R.K. Plasmid-encoded degradation of p-nitrophenol by Pseudomonas cepacia. Biochem. Biophys. Res. Commun., 224, 375-381, 1996.
  • Sobti, R.C.; Kaushal, A.; Kaushal, M. and Banerjee, U.C. Textile Dyes: Their toxicity and the role of natural and genetically engineered microbes in their biodegradation. Editors Sobti, R.C., Obe, G. and Quillardet, P. Trends in Environmental Mutagaenesis, 315-344, 1996.
  • Sonawane, V.C.; Jolly, R.S. and Vohra, R.M. Cephalosporin modification: An extracellular Glutaryl-7-ACA acylase from Bacillus sp. Biotech. lett., 18, 965-968, 1996.
  • Soni, S.K.; Sandhu, I.K.; Bath, K.S.; Banerjee, U.C. and Patnaik. P.R. Batch cultivation and extracellular amylase production by Saccharomycopsis capsularis, and its evaluation for starch saccharification. Folia Microbiologica, 41 243-248, 1996.
  • Suri, C. Raman and Mishra, G.C. Activating piezoelectric crystal surface by salinization for microgravimetric immunobiosensor application. Biosensors Bioelectronics, 11, 1199-1205, 1996.
  • Varshney, Grish C. and Gupta, C.M. Liposomes mediated drug delivery in infectious diseases. Proc. Natl. Sci. Acad. (India), 66, 1-13, 1996.
  • Vinay, D.S.; Raje, M. and Mishra, G.C. Characterization of novel co-stimulatory molecules: A 155-160 kD cell surface protein provides accessory help to CD4+ T cells to proliferate and differentiate. Mol. Immunol., 33, 1-14, 1996.
  • Xu, M.; Chakraborti, P.K.; Garabedian, M.J.; Yamamoto, K.R.and Simons, S.S. Modular structure of glucocorticoid receptor domains is not equivalent to functional independence. Stability and activity of the steroid binding domain are controlled by sequences in separate domains. J. Biol. Chem., 271, 21430-8, 1996.
  • Bhui, A.J.; Bureau, J.P.; Abbas, A.; Mondal, A.K.; Scherrer, K.; Kurkere, A. and Therwat, A . Novel cellular markers in breast cancer: Differential presence of p23K and p30.33K prosomal antigens in tumors of Parsi and non-Parsi women. Int. J. oncology, 9, 669 – 677, 1996.

1995

  • Agrewala, J.N. and Mishra, G.C. A 38-kDa antigen of Mycobacterium tuberculosis predominantly induces the secretion of interleukin-2, interferon-gamma and IgG2a antibodies. Microbiol. Immunol., 39, 801-808, 1995.
  • Banerjee, U.C.; Chisti, Y. and Moo-Young, M. Protein enrichment of corn Stover using Neurospora sitophila. ICHEME Symposium series No. 137.
  • Mitra, S.N.; Kar, S.; Ghosh, R.K.; Pajni, S. and Ghosh, A. Presence of lysogenic phage in the outbreak strains of V. cholerae 0139. J. Med. Microbial., 42, 399-403, 1995.
  • Mukhopadhyay, A.K.; Garg, S.; Nair, G.B.; Kar, S.; Ghosh, R.K.; Pajni, S.; Ghosh, A.; Shimada, T.; Takeda, T. and Takeda, Y. Biotype traits and antibiotic susceptibility of Vibrio cholerae serogroup 01 before, during and after the emergence of the 1039 serogroup. Epidemiol. Infect., 115, 427-434, 1995.
  • Banerjee, U.C.; Chisti, Y. and Moo-Young, M. Effect of particle size and alkaline pretreatment on protein enrichment by Neurospora sitophila. Resources, Conservation and Recycling, 13, 139-146, 1995.
  • Nihalani, D. and Sahni, G. Streptokinase contains two independent plasminogen binding sites. Biochem. Biophys. Res. Commun., 217, 1245-1254, 1995.
  • Cameotra, Swaranjit Singh. Biosurfactant production by an oil field bacterial strain. J. Microbial. Biotechnol., 10, 8-16, 1995.
  • Jeevanjyot and Ghosh, A. Induction of heat shock response in V. cholerae. Microbiology, 141, 2101-2109, 1995.
  • Kalra, V.K.; Gupta, C.M.; Zachowski, A. & Pomorski, T. Lipid asymmetery of membrances. In: Manual on Membrane Lipids (ed. Prasad, R.), Chapter Vl, pp. 112-143, Springer, 1995.
  • Kaur, R.; Kumar, R. and Bachhawat, A.K. Selective recovery of DNA fragments from silica particles: Effect of A-T content and elution conditions. Nucleic Acids Res., 23, 4932-4933, 1995.
  • Owais, M.; Varshney, G.C.; Choudhury, A.; Chandra, S. and Gupta, C.M. Chloroquine encapsulated in malaria-infected erythrocyte specific antibody bearing liposomes effectively controls chloroquine resistant Plasmodium berghei infections in mice. Antimicrob. Agents Chemother., 39, 180-184, 1995.
  • Pajni, S.; Roy Chowdhury, N.; Ghosh, A.; Kar, S. and Ghosh, R.K. Characterization of phage 0139, a Vibrio cholerae 0139 temperature bacteriophage with cohesive DNA termini. FEMS Microbiol. Lett., 131, 69-74, 1995.
  • Patnaik, P.R. An evaluation of a neural network for the start-up of a continuous recombinant fermentation subject to disturbances. Biotechnol. Tech., 9, 691-696, 1995.
  • Patnaik, P.R. Sensitivity of recombinant fermentation with runaway plasmids: A structured analysis of the effect of dilution rate Chem. Engg. Communication, 131, 125-140, 1995.
  • Patnaik, P.R. Parametric sensitivity of streptokinase fermentation through model reduction by a semi-empirical approach. Hungarian J. Industrial Chem., 23, 47-53, 1995.
  • Patnaik, P.R. Analysis of bifuractions in continuous fermentation using recombinant microorganisms with delayed responses. Bioprocess Engg., 12, 199-203, 1995.
  • Patnaik, P.R. Uniqueness and multiplicity of steady states in monocyclic enzyme cascades: A graph theoretic analysis. J. Theoret. Biol., 177, 67-72, 1995.
  • Patnaik, P.R. Liquid emulsion membranes: Principles, problems and applications in fermentation processes. Biotechnol. Adv., 13, 175-208, 1995.
  • Patnaik, P.R. A heuristic approach to fed-batch optimisation of streptokinase fermentation. Bioprocess Engg., 13, 109-112, 1995.
  • Prasad, H.K.; Annapurna, P.S.; Majumdar, S. and Raje, Manoj. Identification of novel 30 kDa antigen of M. tuberculosis (MTB). J. Cellular Biochem., Supplement 19B, 1995.
  • Pruthy, Vikas and Cameotra, Swaranjit Singh. Rapid method for monitoring maximum biosurfactant production obtained by cretone precipitation. Biotechnol. Techniques, 9, 271-276, 1995.
  • Raghava, G.P.S. DNAOPT: A computer program to aid optimization of gel conditions of DNA gel Electrophoresis and SDS-PAGE. Biotechniques, 18, 276-82, 1995.
  • Gupta, R.; Sharma, P. and V.V.Vyas. Effect of growth environment on the stability of a recombinant shuttle plasmid, pCPPS-31, in E. coli. J. Biotechnol., 41, 29-37. 1995.
  • Saha, Bhaskar; Gobardhan Dass; Vohra, Harpreet; Ganguly, Nirmal K. and Mishra, G.C. Macrophage T-Cell interaction in experimental visceral Leishmaniasis 1. Selective regulation of co-stimulatory molecules on Leishmania infected macrophages and its implications in the suppression of cell mediated immunity. Eur. J. Immunol., 25, 2492-2498, 1995.
  • Suri, C.R.; Jain, P.K. and Mishra, G.C. Development of PZ crystal based microgravimetric immunoassay for determination of insulin concentration. J. Biotechnology, 39, 27-34, 1995.
  • Suri, C.R. and Mishra, G.C. A specific microgravimetric immunosensor for monitoring insulin concentration. Proc. of IEEE Engg. in Medicine Biology, 4, 9.2-9.4, 1995.
  • Vinay, D.S.; Raje, M.; Verma, R.K. and Mishra, G.C. Characterization of novel costimulatory molecules: A Protein of 38-42 kDa from B cell surface is concerned with T cell activation and differentation. J. Biol. Chem., 270, 23429-23436, 1995.
  • Jagath-Reddy, J.; Ganesan, K.; Savithri, H.S.; Datta, A. and Rao, N.A. cDNA cloning, overexpression in Escherichia coli, purification and characterization of sheep liver cytosolic serine hydroxymethyltransferase. Eur. J. Biochem., 230, 533-7, 1995.

1993

  • Agrewala, J.N.; Raghava, G.P.S. and Mishra, G.C. Measurement and computation of murine interleukine-4 and interferon-gamma by exploiting the unique abilities of these lymphokines to induce the secretion of IgG1 and IgG2a. J. Immunoassay, 14, 83-97, 1993.
  • Singh, Arvinder M.; Owais, M. and Varshney, G.C. Use of specific polyclonal antibodies for site specific drug targeting to malaria infected erythrocytes in vivo. Ind. J. Biochem. Biophys., 30, 411-413, 1993.
  • Banerjee, U.C. Characterization of soluble rifamycin oxidase from Curvularia lunata. Lett. Appl. Microbiol., 17, 1-3, 1993.
  • Banerjee, U.C. Studies of rifamycin oxidase immobilized on agar gel. J. General Applied Microbiol., 39, 251-255, 1993.
  • Banerjee, U.C. Evaluation of different biokinetic parameters of Curvularia lunata at different environmental conditions. Biotechnol. Tech., 7, 635-638, 1993.
  • Banerjee, U.C. Effect of stirrer speed, aeration rate and cell concentarion on Volumetric Oxygen Transfer Coefficient (Kca) in the cultivation of Curvularia lunata in a batch reactor. Biotechnol. Tech.,7, 733-738, 1993.
  • Banerjee, U.C. Transformation of rifamycin B with growing and resting cells of Curvularia lunata. Enzyme Microbial.Technol., 15, 1037-1041, 1993.
  • Banerjee, U.C. Transformation of rifamycin B with soluble rifamycin oxidase from Curvularia lunata. J. Biotechnol., 29, 137-143, 1993.
  • Banerjee, U.C. Effect of gulcose and carboxymethyl cellulose on growth and rifamycin oxidase production by Curvularia lunata. Current Microbiol., 26, 261-265, 1993.
  • Banerjee, U.C.; Chisti, Y. and Moo-Young, M. Spectrophotometric determination of Mycelial biomass. Biotechnol. Tech., 7, 313-316, 1993.
  • Banerjee, U.C. and Patnaik, P.R. A comparative study of the deactvation of b-glucosidase from Curvularia lunata immobilised on three matrices. Indian Chem. Engg., 35, 37-39, 1993.
  • Basu, R.; Ghosh, A.N.; Dasgupta, S. and Ghosh, A.Biophysical characterization of Vibrio EL Tor typing phage e5. FEMS Microb.Lett., 106, 9-15, 1993.
  • Das, B.; Ghosh, R.K.; Sharma, C.; Bhasin, N. & Ghosh, A. Tandem repeats of cholera toxin gene in Vibrio cholerae 0139. Lancet, 342, 1173-1174, 1993.
  • Ghei, S.K.; Agrewala, J.N.; Sengupta, U. and Sudhakar, K.S. Group specific component in Erythema Nodosum Leprosum. Ind. J. Lepr. 65, 323-325, 1993.
  • Gudi, T. and Gupta, C.M. HSP 70-like protein in Rhesus rrythrocyte cytosol and its interaction with membrane skeleton under heat and pathologic stress. J. Biol. Chem., 268, 21344-21350, 1993.
  • Gupta, C.M. Phospholipids in disease. In: Phospholipids Handbook (G. Cevc, Ed.), 895-905, Marcel Dekkker, New York, 1993.
  • Naresh Kumar. Recent developments in biotechnology: An Indian perspective. J. Sci. Industrial Res., 52, 308-312, 1993.
  • Naresh Kumar. The Human Genome Project: Impact of patenting of human gene on further development of knowledge of human genome. J. Sci. Industrial Res., 52, 319-322, 1993.
  • Owais, M.; Ahmed, I.; Krishnakumar, B.; Jain, R.K.; Bachhawat, A.K. and Gupta, C.M. Tuftsin-bearing liposomes as drug vehicles in the treatment of experimental aspergillosis. FEBS. Lett., 326, 56-58, 1993.
  • Patnaik, P.R. A simple analytical solution of a model for probabilistic plasmid loss and its implications in continuous cultures. Biotechnol. Tech., 7, 357-360, 1993.
  • Patnaik, P.R. Dependence of process variables on fermentation parameters during start-up of a continuous reactor with recombinant microorganisms. Biotech. Tech., 7, 137-142, 1993.
  • Patnaik, P.R. The effect of macromixing on oscillatory behaviour during recombinant fermentation in a continuous stirred tank reactor. Chem. Engg. Commun., 125, 155-169, 1993.
  • Patnaik, P.R. Steady state multiplicity in enzyme deactivation-application of a simple graph theoretic method. Enzyme Microb.Tech., 15, 162-166, 1993.
  • Patnaik, P.R. Some qualitative features of homogeneous stability and turning instability in two species completion in a batch fermenter. Ind. J. Technol., 31, 692-696, 1993.

1992

  • Bakshi, A.; Gupta J.K. and Patnaik P.R. Pullulanase and a-amylase production by a Bacillus cereus isolate. Lett. Appl. Microbiol.,14, 210-213, 1992.
  • Bakshi, A.; Patnaik, P.R. and Gupta, J.K. Thermostable pullulanase from a mesophilic isolate Bacillus cereus strain and its mutant UV7.4. Biotech. Lett., 14, 689-694, 1992.
  • Banerjee, U.C. and Chakrabarti, S. Production and properties of carboxymethylcellulase (Endo-1, 4-B-glucanase) from Curvularia lunata. World J. Microbiol. 8, 423-424, 1992.
  • Banerjee, U.C. Immobilized B-glucosidase from Curvularia lunata. Folia Microbiol., 37, 250-256, 1992.
  • Banerjee, U.C. and Srivastava, J.P. Effect of pH and glucose concentration on the production of rifamycin oxidase by Curvularia lunata in a batch reactor. J. Biotech., 28, 229-236, 1992.
  • Banerjee, U.C.; Saxena, B. and Chisti,Y. Biotransformations of rifamycins: Process possibilities. Biotechnol. Advances, 10, 577-595, 1992.
  • Mukhopadhyay, G. and Ghosh, A. Purification and properties of DNA gyrase from V. cholerae. Biochem. J., 280, 797-800, 1992.
  • Patnaik, P.R. A geometric interpretation of the feasibility of reactive extraction/reextraction of penicillin G. J. Biotechnol., 23, 95-102, 1992.
  • Patnaik, P.R. Sensitivity analysis of fed-batch fermentation for the production of penicillin G. Biotech. Tech., 6, 9-14, 1992.
  • Raghava, G.P.S.; Joshi, A.K. and Agrewala, J.N. Calculation of antibody and antigen concentrations from ELISA data using graphical method. J. Immunol. Methods, 153, 263-264, 1992.
  • Vohra, R.M. and Vyas, V.V. Rifamycin oxidase immobilized on nylon fibers. Biotech. Tech., 6, 61-64, 1992.
  • Vohra, R.M. Novel assay for screening rifamycin B producing mutants. Appl. Environ. Microbiol., 58, 403-404, 1992.
  • Sudershan R.V.; Prasad, G.S.; Krishna, T.P. and Bhat, R.V. Field level evaluation of aflatoxin detection kit. J. Food Protection, 55, 392-394. 1992.
  • Vyas, V.V. and Patnaik, P.R. A reaction zone approach to analyse reactive extraction with liquid emulsion membranes. ANABIOTEC 92, Noordwijkerhont, Netherlands, 1993.

1990

  • Banerjee, U.C. Production of b-glucosidase (cellobiase) by Curvularia sp. Lett. Appl. Microbiol., 10, 197-199, 1990.
  • Bansal, M.R.; Kaushal, N. and Banerjee, U.C. Effects of oral lead acetate administration on the mouse brain. J. Trace Elements Exp. Med., 3, 235-246, 1990.
  • Basu, S.K. Receptor mediated endocytosis of macromolecular conjugates in selective drug delivery. Biochem. Pharmacol., 40, 1941-1946, 1990.
  • Jain, R.K. Copper-resistant microorganisms and their role in the environment. World J. Microbiol. Biotechnol., 6, 356-365, 1990.
  • Mondal, A.K. and Roy, T.K. Temperature dependence of transcriptional activity of yeast 3-phosphoglycerokinase promoter in Escherichia coli. Biochem. Biophys. Res. Commun., 170, 1-9, 1990.
  • Jolly, R.S.; Gregory, Luedtke; Derek Sheehan and Tom LivinghouseNovel cyclization reactions on transition metal templates. The catalysis of intramolecular [4+2] cycloadditions by low-valent rhodium complexes. J. Am. Chem. Soc., 112, 4965 – 4966. 1990.

1988

  • Ananthapadmanaban, D. and Subramanian, C.V. Paraeutypa, a new genus of the Diatrypaceae. Trans. Br. Mycol. Soc., 90, 337-330, 1988.
  • Ananthapadmanaban, D. Cyptascoma, a new genus of the valsaceae. Trans. Br. Mycol. Soc., 90, 479-482, 1988.
  • Majumdar, S.; Mukhopadhay, Nishit. K.; Ghosh, S.K. and Bose Susil K. Genetic analysis of the Mycobacillin biosynthetic pathway in Bicillus B3. J. Gen. Microbiol., 134, 1147-1153,1988.

1987

  • Arora, D.S. and Sandhu, D.K. Decomposition of angiospermic wood sawdust and laccase production by two Pleurotus species. J. Basic Microbiol., 27, 179-184, 1987.
  • Bhattacharya, B.; Mondal, C.; Basu, S.K. and Sarkar, P.K. Regulation of a - and b-tubulin mRNAs in rat brain during synaptogenesis. Molecular Brain Research, 2, 159-162, 1987.
  • Jain, R.K.; Sayler, G.S.; Wilson, J.T.; Houstow, L. and Pacia, D.Maintenance and stability of genotypes in groundwater aquifer material. Appl.. Environ. Microbiol., 53, 996-1002, 1987.
  • Jain, R.K. and Sayler, G.S. Problems and potential for in situ treatment of environmental pollutants by engineered microorganisms. Microbiological Sciences, 4, 59-63, 1987.
  • Blackburn, J.W.; Jain, R.K. and Sayler, G.S. The molecular microbial ecology of a naphthalene degrading genotype in activated sludge. Environmental Science Technology, 21, 884-890, 1987.
  • Jayasheela, M.; Sharma, V.K.; Mondal, A. and Saxena, S.N. Plasmid mediated enterotoxigenicity in Salmonella strains isolated from patients of gastroenteritis. Indian J. Med. Res., 85, 496-499, 1987.

1986

  • Chakrabarti, T. Molecular biological techniques for taxonomic studies. In “Recent topics in experimental and conceptual plant pathology” (ed.) R.S. Singh. Oxford-IBH Publishing Co., New Delhi, 1986.

1985

  • Nil

2015

  • Kumar, R.; Chaudhary, K.; Sharma, M.; Nagpal, G.; Chauhan, J.S.; Singh, S.; Gautam, A. and Raghava, G.P.S.AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides.  Nucleic Acids Res., 43, D956-62, 2015. (IF 8.808 )
  • Tyagi, A.; Tuknait, A.; Anand, P.; Gupta, S.; Sharma, M.; Mathur, D.; Joshi, A.; Singh, S.; Gautam, A. and Raghava, G.P.S. CancerPPD: a database of anticancer peptides and proteins. Nucleic Acids Res., 43, D837-43, 2015. (IF 8.808)
  • Singh, N. and Kumar, A. Virulence factor sSenX3 is the oxygen-controlledreplication switch of Mycobacterium tuberculosis. Antioxidants and Redox Signalling., 22, 603-613, 2015. (IF 7.667)
  • Chodisetti, S.B.; Gowthaman, U.; Rai, P.K.; Vidyarthi, A.; Khan, N. and Agrewala, J.N.Triggering Through Toll-like Receptor 2 Limits Chronically Stimulated T-helper Type 1 Cells From Undergoing Exhaustion. J. Infect. Dis. 211, 486-496, 2015. (IF 5.778)
  • Kaur, S.; Srivastava, G.; Sharma, R.N. and Jolly, R.S.immunosuppressive agent Caerulomycin A exerts its effect by depleting cellular iron content. Br. J. Pharmacol. 172(9), 2286-2299, 2015. (IF 4.99)
  • Srivastava, G.; Pal, M.; Kaur, S. and Jolly, R.S.A highly efficient designer cell for enantioselective reduction of ketones. Catal. Sci. Technol., 5, 105-108, 2015. (IF 4.76).
  • Dkhar, H.K.; Gopalsamy, A.; Loharch, S.; Kaur, A.; Bhutani, I.; Saminathan, K.; Bhagyaraj, E.; Chandra, V.; Swaminathan, K.; Agrawal, P.; Parkesh, R. and Gupta, P.Discovery of Mycobacterium tuberculosis α-1,4-glucan branching enzyme (GlgB) inhibitors by structure and ligand based virtual screening. J. Biol. Chem., 290(1), 76-89, 2015. (IF 4.60)
  • Nanduri, R.; Mahajan, S.; Bhagyaraj, E.; Sethi, K.; Kalra, R.; Chandra, V. and Gupta, P.The Active Form of Vitamin D Transcriptionally Represses Smad7 Signaling and Activates Extracellular Signal-regulated Kinase (ERK) to Inhibit the Differentiation of a Inflammatory T Helper Cell Subset and Suppress Experimental Autoimmune Encephalomyelitis. J. Biol. Chem.,  290, 12222-12236, 2015. (IF 4.60)
  • Mahajan S, Saini A, Chandra V, Nanduri R, Kalra R, Bhagyaraj E, Khatri N, Gupta P.Nuclear receptor Nr4a2 promotes alternative polarization of macrophages and confer protection in sepsis. J Biol Chem.  (In Press) (IF 4.60)
  • Islam, Z.; Kumar, A.; Singh, S.; Salmon, L. and Karthikeyan, S.Structural Basis for Competitive Inhibition of 3,4-Dihydroxy-2-Butanone-4-Phosphate Synthase from Vibrio cholera. J. Biol Chem., 290(18), 11293-11308, 2015 (IF 4.60)
  • Agrawal, Y.; Khatri, I.; Subramanian, S. and Shenoy, B.D.Genome sequence, comparative analysis and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii. Genome Biol. Evol. 7, 916-930, 2015.  (IF 4.532)
  • Bhatia, R.; Gautam, A.; Gautam, S.K.; Mehta, D.; Kumar, V.; Raghava, G.P.S. and  Varshney, G.C.Assessment of SYBR Green I Dye-Based fluorescence Assay for Screening Antimalarial Activity of Cationic Peptides and DNA Intercalating Agents. Antimicrob Agents Chemother. 59, 2886-2889, 2015. (IF 4.451)
  • Das, S.; Ghosh, A.K.; Singh, S.; Saha, B.; Ashish and Das, P.UnmethylatedCpG-motifs in the L. donovani DNA regulate TLR9-dependent delay of programmed cell death in macrophages J Leuk Biol., 97(2), 363-378, 2015. (IF 4.304)
  • Gautam, A.; Sharma, M.; Vir, P.; Chaudhary, K.; Kapoor, P.; Kumar, R.; Nath, S.K. and Raghava, G.P.S. Identification and characterization of novel protein derived arginine-rich cell penetrating peptides. Eur. J. Pharm. Biopharm., 89, 93-106., 2015. (IF 4.245)
  • Dixit, P.;  Mehta, A.; Gahlawat, G.; Prasad, G.S. and Choudhury, A.R.Understanding the effect of interaction among aeration, agitation and impeller positions on mass transfer during pullulan fermentation by  AUREOBASIDIUM PULLULANS.  RSC ADVANCES, 5, 38984-38994, 2015.
  • Singh, P.K.; Solanki, V.; Sharma, S.; Thakur, K.G.; Krishnan, B. and Korpole, S.The intramolecular disulfide-stapled structure of laterosporulin, a class IIdbacteriocin, conceals a human defensin-like structural module. FEBS J., 282(2), 203-214, 2015. (IF 3.986)
  • Mushtaq, K.; Sheikh, J.A.;  Md. Amir; Khan, N.; Singh, B. and  Agrewala, J.N. Rv2031c of Mycobacterium tuberculosis: a master regulator of Rv2028-Rv2031 (HspX) operon.  Frontiers in Microbiology. (In press) (IF 3.941)
  • Siddiqui, K.F.; Amir, M.; Khan, N.; Gurram, R.K.; Sheikh, J.A.; Rajagopal, K. and Agrewala, J.N. Prime-boost vaccination strategy utilizing BCG and latency associated protein Acr1 reinvigorates BCG potency. J. Clin. Exp. Immunol. (In press) (IF  )
  • Stark, B.; Pagilla, K. and Dikshit, K. L. Recent applications of Vitreoscilla haemoglobin technology in bio-product sysnthesis and bioremediation. Appl. Microb. Biotechnol. 99, 1627-1636, 2015. (IF 3.811)
  • Kaur, G. and Subramanian, S.The insertion domain 1 of class IIA dimeric glycyl-tRNA synthetase is a rubredoxin-like zinc ribbon.  J. Struct. Biol. S1047-8477(15)00035-0., 2015. (IF 3.369)
  • Bhutani I, Loharch S, Gupta P, Madathil R, Parkesh R.Structure, dynamics, and interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 examined by molecular modeling, simulation, and electrostatic studies. PLoS One.,  10:e0119771, 2015.
  • Loharch, S.; Bhutani, I.; Jain, K.; Gupta, P.; Sahoo, D.K. and Parkesh, R.EpiDBase: a manually curated database for small molecule modulators of epigenetic landscape. Database (Oxford). 2015.  
  • Dhar, J.; Chakrabarti, P.; Saini, H.; Raghava, G.P. and Kishore, R.ω-Turn: A novel β-turn mimic in globular proteins stabilized by main-chain to side-chain CH···O interaction. Proteins. 83, 203-214, 2015. (IF 2.921)
  • Singh, H.; Singh, S. and Raghava, G.P.S.In silico platform for predicting and initiating β-turns in a protein at desired locations.Proteins. 83, 910-921, 2015 (IF 2.921)
  • Panwar, B. and  Raghava, G.P.S.Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides.  Genomics., 105, 197-203, 2015.  (IF 2.793)
  • Kachhapa, S and Singh, B. Role of DNA conformation & energetic insights in Msx-1-DNA recognition as revealed by molecular dynamics studies on specific and nonspecific complexes. J. Biomol. Struct. Dyn.,1-14, 2015.  (IF 2.916).
  • Vaidya, B.; Kumar, R.; Korpole, S.; Tanuku, N.R. and Pinnaka, A.K.Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium of the family Alteromonadaceae isolated from coastal surface sea water. Int J Syst Evol Microbiol. (In press)  (IF 2.798)
  • Gupta, S.; Kapoor, P.; Chaudhary, K.; Gautam, A.; Kumar, R.; Raghava, G.P.S.Peptide toxicity prediction.  Methods Mol Biol., 1268, 143-157, 2015. 
  • Singh, S.; Rathore, Y.S.; Bhando, T.; Hade, M.D.; Ashish and  Dikshit, K.L.Bilobed shape of PadA reveals the connectivity from single to multi-domain bacterial plasminogen activators. Int.  J. Biol. Macromol. 78, 370-378, 2015.
  • Hoque, M.; Nanduri, R.; Gupta, J.; Mahajan, S.; Gupta, P. and  Saleemuddin, M.Oleic acid complex of bovine α-lactalbumin induces eryptosis in human and other erythrocytes by a Ca2+-independent mechanism. Biochim.  Biophys.  Acta. (In press) 

1994

  • Singh, P.; Ganesan, K.; Malathi, K.; Ghosh, D. and Datta, A. ACPR, a STE12 homologue from Candida albicans is a strong inducer of pseudohyphae in Saccharomyces cerevisiae haploids and diploids. Biochem. Biophys. Res. Commun., 205, 1079-85, 1994.
  • Malathi, K.; Ganesan, K. and Datta, A. Identification of a putative transcription factor in Candida albicans that acncomplement the mating defect of Saccharomyces cerevisiae ste12 mutants. J. Biol. Chem., 269, 22945-51, 1994.
  • Vijayakrishnan, L.; Kumar, V.; Agrewala, J.N.; Mishra, G.C. and Rao, K.V. Antigen-specific early primary humoral responses modulate immunodominance of B cell epitopes. J. Immunol., 153, 1613-25, 1994.
  • Raghava, G.P.S. and Sahni, G. GMAP: A multipurpose computer program to aid synthetic gene design, cassette mutagenesis and introduction of potential restriction sites into DNA sequences. Biotechniques, 16, 1116-1123, 1994.
  • Agarwal, A.; Kandpal, H.; Gupta, H.P.; Singh, N.B. and Gupta, C.M. Tuftsin bearing liposomes as rifampicin vehicles in treatment of tuberculosis in mice. Antimicrob. Agents Chemother., 38, 588-593, 1994.
  • Agrewala, J.N.; Vinay, D.S.; Joshi, A. and Mishra, G.C. A 150-kDa molecule of macrophages membrane stimulates interleukin-2 and interferon-gamma production and proliferation of ovalbumin-specific CD4+ T cells. Eur. J. Immunol., 24, 2092-2097, 1994.
  • Bachhawat, A.K.; Susham, I. and Jones, E.W. The yeast homolog of H58, a mouse gene essential for embryogenesis performs a role in the delivery of protein to the vacuole. Genes & Development, 8, 1379-1387, 1994.
  • Garrido, F.; Banerjee, U.C.; Chisti, Y. and Moo-Young, M. Disruption of a recombinant yeast for the release of B-galactosidase. Bioseparation, 4, 319-328, 1994.
  • Jain, R.K.; Dreisback, J.H. and Spain, J.C. Biodegradation of p-nitrophenol via 1,2,4-Benzenetriol by an Arthrobacter sp. Appl. Environ. Microbiol., 60, 3030-3032, 1994.
  • Joshi, Meenal and Dikshit, K.L. Oxygen dependent regulation of Vitreoscilla globin gene: Evidence for positive regulation by FNR. Biochem. Biophys. Res. Commun., 202, 535-542, 1994.
  • Majumdar, Sekhar and Gupta,Reena Effect of interleukin on the intracellular growth of M. Microti within J7774A.1 Cells. FEMS Microbiol.lett., 120, 329-334, 1994.
  • Modarress, K.J.; Cavanaugh, Alice H.; Chakraborti, Pradip K. and Simons, S. Stoney Jr. Metal oxyanion stabilization of the rat glucocorticoid receptor is independant of thiols. J. Biol. Chem., 269, 25621-25628, 1994.
  • Patnaik P.R. Micromixing and the steady state performance of bioreactors using recombinant bacteria-analysis through a reversed two-environment model. J. Chem. Technol. Biotechnol., 61, 337-342, 1994.
  • Patnaik P.R. Fractal characterization of the effect of noise on biological oscillations: The biosynthesis of ethanol. Biotech. Tech., 8, 419-424, 1994.
  • Patnaik, P.R. Dynamic sensitivity of a chemostat for a microbial reaction with substrate and product inhibition. Appl. Mathematical Modelling, 18, 620-627, 1994.
  • Patnaik, P.R. Effect of feed cycling on plasmid stabilization during continuous fermentation: The case of variable plasmid loss probability. Canadian J. Chemical Engg., 72, 929-934, 1994.
  • Patnaik, P.R. Does macromixing affect plasmid stability during continuous fermentation with recombinant bacteria ?. Indian Chemical Engineer, 36, 85-88, 1994.
  • Raghava, G.P.S. Recent excitement about artificial neural networks. Biobytes, 3, 4-5, 1994.
  • Raghava, G.P.S.; Goel, Apollina; Arvinder M. Singh and Varshney, G.C. A Simple Microassay for computing the hemolytic potency of drugs. Biotechniques, 17, 1148-1152, 1994.
  • Raghava,G.P.S. Improved estimation of DNA fragment lengths from gel electrophoresis. Biotechniques, 17, 100-104, 1994.
  • Raghava, G.P.S. and Agrewala, J.N. Method for determining the affinity of monoclonal antibody using non-competitive ELISA: A computer program. J. Immunoassay, 15, 115-128, 1994.
  • Saha, Bhaskar; Dass, Gobardhan; Vohra, Harpreet; Ganguly, Nirmal K. and Mishra, G.C. Macrophage-T Cell inteaction in experimental mycobacterial infection. Selective regulation of co-stimulatory molecules on mycobacterium infected macrophages and its implication in the suppression of cell-mediated immune response. Eur. J. Immunol., 24, 2618-2624, 1994.
  • Suri, C.R.; Raje Manoj and Mishra, G.C. Determination of immunoglobulin concentration by piezoelectric crystal immunobiosensor coated with protamine. Biosensors Bioelect., 9, 325-333, 1995.
  • Banerjee, U.C. Optimization of culture conditions for the production of rifamy-cin oxidase by Curvularia lunanta. World J. Microbiol. Biotech., 10, 462-464, 1994.
  • Banerjee, U.C. Growth and production of rifamycin oxidase by Curvularia lunata. Folia Microbiologica, 39, 49-52, 1994.
  • Vyas, V.V., Gupta, S. and Sharma, P. Stability of a recombinant shuttle plasmid in Bacillus subtilis and E.coli. Enz. Microb.Technol., 16, 240-246, 1994.
  • Sasikala C.H.; Ramana, C.H.V. and Prasad, G.S. Hydrogen production by mixed cultures. World J. Microbiol. Biotechnol., 10, 221-223. 1994.
  • Gupta, C.M. Liposomes in Drug Delivery: In: Tropical Diseases: Molecular Biology, 1994.
  • Control Strategies (Kumar, S.; Sen, A.K.; Dutta, G.P.and Sharma, R.N. eds.), 229-235, Publications & Information Directorate (CSIR), New Delhi.

1991

  • Banerjee, U.C. and Vohra, R.M. Production of Laccase by Curvularia sp. Folia Microbiologica, 36, 343-346, 1991.
  • Basu, S.K. Interfacing biological, physiological and engineering sciences-IMTECH. Curr. Sci., 60, 524-528, 1991.
  • Majumdar, S. and Basu, S.K. Killing of intracellular Mycobacterium tuberculosis by receptor mediated drug delivery. Antimicrob. Agents Chemother., 35, 135-140, 1991.
  • Jain, R.K.; Bayly, R.C. and Skurray R.A. Specific deletion of a large segment of pRA500: A 3, 5-xylenal degradative plasmid. Letters Appl. Microbiol., 12, 216-220. 1991.

1989

  • Chaudhuri, G.; Mukhopadhyay, A. and Basu, S.K. Selective delivery of drugs to macrophages through acetyl low density lipoproteins: An efficient chemotherapeutic approach against leishmaniasis. Biochem. Pharmacol., 38, 2995-3002, 1989.
  • Mukhopadhyay, A.; Chaudhuri, G.; Arora, S.K.; Sehgal, S. and Basu, S.K. Receptor mediated drug delivery to macrophages in chemotherapy of leishmaniasis. Science, 244, 705-707, 1989.
  • Vohra, R.M.; Banerjee, U.C.; Das, S. and Dube, S. Microbial Transformation of Rifamycin B: A new extracellular oxidase from Curvularia lunata. Biotechnol. Lett., 11, 851-854, 1989.
  • Vohra, R.M. and Dube, S. Identification and quantitation of rifamycin by reverse phase high performance liquid chromatography. J. Chromatog., 477, 463-466, 1989.
  • Roy, A. and Roy, T.K. A database management system for recombinant DNA clones and hosts for use in IBM personal computers. Comput. Biol. Med., 5, 321-323, 1989.
  • Patnaik, P.R. Transient analysis of a batch reactor with temperature fluctuations. React. Kinet. Catal. Lett., 39, 305, 1989.
  • Patnaik, P.R. Oscillations induced by inflow noise for sequential reactions in a CSIR. React. Kinet. Catal. Lett., 40, 381, 1989.

1984

  • Roy, P.K.; Roy, U. and Dube, D.K. Immobilised cellulolytic and hemicellulolytic enzymes from M. phaseolina. J. Chem. Tech. Biotechnol., 34 B,165-170, 1984.
  • Chen, Y.M.; Chakrabarti, T. and Lin, E.C. Constitutive activation of L-fucose genes by an unlinked mutation in Escherichia coli. J. Bacteriol., 159, 725-9, 1984.