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PUBLICATIONS DURING 2006


  • Saha, S., Zack, J., Singh, B. and Raghava, G. P. S.
    VGIchan: Prediction and classification of voltage-gated ion channels. Genomics Proteomics Bioinformatics, 4, 253-258, 2006.


  • Jain V.; Dongre M. and Raychaudhuri S.
    Interaction of Vibrio cholerae O139 with an intestinal parasite, Entamoeba
    histolytica. J Med Microbiol., 55, 1755-1756,2006.


  • Luu, R.A.; Gurnani, K.; Dudani, R.; Kammara, Rajagopal; Faassen, H.V.; Sirard, J.C.; Krishnan, L. and Sad, S.
    Delayed expansion and contraction of CD8+ T cell response during infection with virulent Salmonella typhimurium. J. Immunol., 177, 1516-1525 , 2006.


  • Srinivasan, V.B.; Virk, R.K.; Kaundal, A.; Chakraborti, R.; Datta, B.; Ramamurthy, T.; Mukhopadhyay and Ghosh, Amit
    Mechanism of drug resistance in clonally related clinical isolates of Vibrio fluvialis Isolated in Kolkata, India. Antimocrob. Agents Chemother., 50, 2228-2432, 2006.


  • Patnaik, P.R.
    Feasibility and uniqueness of stationary states of nonideal recombinant fermentations React. Kinet. Catal. Lett., 87, 11-18, 2006.


  • Patnaik, P.R.
    External, extrinsic and intrinsic noise in cellular systems: analogies and implications for protein synthesis. Biotechnol. Mol. Biol. Rev., 1, 123-129, 2006.


  • Patnaik, P.R.
    Enhancement of PHB biosynthesis by Ralstonia eutropha in fed-batch cultures by neural filtering and control. Food Bioprod. Process., 84 (C2), 150-156, 2006.


  • Patnaik P.R.
    Fed-batch optimization of PHB synthesis through mechanistic, cybernetic and neural approaches. Bioautomation, 5, 23-38, 2006.


  • Shivaji, S.; Chaturvedi, P.; Suresh, K.; Reddy, C.B.S.; Wainwrite, M.; Narlikar, J.V. and Bhargava, P.M.
    Bicillus aerius sp. nov., Bicillus aerophilus sp. nov., Bacillus stratosphericus sp. nov., and Bacillus altitudinis sp. nov., isolated from cryogenic tubes used for collecting air samples from high altitudes. Int. J. Syst. Evol. Microbiol., 56, 1465-1473, 2006.


  • Pawaria, S.; Gambhir, V.; Rajamohan, G.; Varshney, G.C. and Dikshit, K.L.
    Intracellular growth and survival of Salmonella typhimurium carrying truncated hemoglobins of Mycobacterium tuberculosis. Microbial. Pathog., 42, 119-128, 2007.


  • Kumar, Manoj; Jain, S.K.; Pasha, S.T.; Chhatopadhyay, D.; Shiv Lal and Rai, A.
    Genomic diversity in the regulatory nef gene sequences in Indian isolates of HIV-1: emergence of a distinct subclade and predicted implications. AIDS Research and Human Retroviruses, 22, 1206-1219, 2006.


  • Raje, M.; Dhiman, R.; Majumdar, S.; Dass, T.; Dikshit, K.L. and Kaur, R.
    Charged nylon membrane substrate for convenient and versatile high resolution microscopic analysis of E. coli and mammalian cells in suspension culture. Cytotechnol., 51, 111-117, 2006.


  • Paul, D.; Singh, R.and Jain, R.K.
    Chemotaxis of Ralstonia sp. SJ98 towards p-nitrophenol in soil. Environ Microbiol., 8, 1797-1804, 2006.


  • Manikandan, K.; Bhardwaj, A.; Gupta, N.; Lokanath, N.K.; Ghosh, A.; Reddy, V.S. and Ramakumar, S.
    Crystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp. NG-27: structural insights into alkalophilicity and implications for adaptation to polyextreme conditions. Protein Sci., 15, 1951-1960, 2006.


  • Shahi, P.; Kumar, I.; Sharma, R.; Sanger, S.; and Jolly, R.S.
    Characterization of a novel long-chain acyl-CoA thioesterase from Alcaligenes faecalis. FEBS J., 273, 2374-87, 2006.


  • Sharma, S.; Kulkarni, S.K.; Agrewala, J.N. and Chopra, K.
    Curcumin attenuates thermal hyperalgesia in a diabetic mouse model of neuropathic pain. Eur. J. Pharmacol., 536, 256-261, 2006.


  • Aggarwal, M. and Mondal, A.K.
    Role of N-terminal hydrophobic region in modulating the subcellular localization and enzyme activity of the bisphosphate nucleotidase from Debaryomyces hansenii. Eukaryot. Cell., 5, 262-271, 2006.


  • Thakur, M. and Chakraborti, P.K.
    GTPase activity of mycobacterial FtsZ is impaired due to its transphosphorylation by the eukaryotic type Ser/Thr kinase, PknA. J. Biol. Chem., 281, 40107-40113, 2006.


  • Singh, J.; Paul,D. and Jain, R.K.
    Biofilms: implications in bioremediation. Trends Microbiol., 14, 389-397, 2006.


  • Roychoudhuri, K.; Dasgupta, B.; Sen, Pradip; Laskay, T.; Solbach, W.; De, Tripti and Roy, Syamal
    Evidence of direct interactions between the CC-chemokines CCL3, CCL4 and CCL5 and Leishmania promastigotes. Mol. Biochem. Parasitol., 150, 374-377, 2006.


  • Pandey, G.; Pandey, J. and Jain, R.K.
    Monitoring Arthrobacter protophormiae RKJ100 in a .tag and chase. method during P- Nitrophenol bio-remediation in soil microcosms. Appl. Microbiol. Biotechnol., 70, 757-760, 2006.


  • Raghava, G.P.S. and Barton, G.J.
    Quantification of the variation in percentage identity for protein sequence alignments. BMC Bioinformatics, 7, 415, 2006.


  • Soni, P; Prasad, G.S. and Banerjee, U.C.
    Optimization of physicochemical parameters for the enhancement of carbonyl reductase production by Candida viswanathii. Bioprocess Biosyst. Eng., 29, 149-156, 2006.


  • Saha, P. and Chakrabarti, T.
    Emticicia oligotrophica gen nov., sp. nov., a new member of family .Flexibacteraceae., phylum Bacteroidetes. Int. J. Syst. Evol. Microbiol., 56, 991-995, 2006.


  • Saha, P. and Chakrabarti, T.
    Aeromonas sharmana sp.nov., isolated from a warm spring. Int. J. Syst. Evol. Microbiol., 56,
    1905-1909, 2006.


  • Saha, P. and Chakrabarti, T.
    Flavobacterium indicum sp. nov., isolated from warm spring water in Assam, Insia. Int. J. Syst. Evol. Microbiol., 56, 2617-2621, 2006.


  • Soni, P.; Prasad, G.S. and Banerjee, U.C.
    Optimization of physicochemical parameters for the enhancement of carbonyl reductase production by Candida viswanathii. Bioprocess Biosyst. Eng., 29, 149-156, 2006.


  • Kaundal, Rakesh; Kapoor, A.S. and Raghava, G.P.S.
    Machine learning techniques in disease forecasting: a case study on rice blast prediction. BMC Bioinformatics,7, 485, 2006.


  • Gupta, S. ; Sinha, A. and Sarkar, D.
    Transcriptional autoregulation by Mycobacterium tuberculosis PhoP involves recognition of novel direct repeat sequences in the regulatory region of the promoter. FEBS Letters, 580, 5328-5338, 2006.


  • Swain, S.L.; Agrewala, J.N.; Browm, D.; Gibbs, D.J.; Golesh, S., Huston, G.; Jones, S.; Kamperschroer, C.; Lee, W.H.; McKinstry, K.; Roman, E.; Strutt, T. and Weng, N.P.
    CD4 memory: generation and multi-faceted role for CD4 T cells in protective immunity to influenza. Immunol. Rev., 211, 8-22, 2006.


  • Singh, V. and Agrewala, J. N.
    Regulatory role of pro-Th1 and pro-Th2 cytokines in modulating the activity of Th1 and Th2 cells when B cell and macrophages are used as antigen presenting cells. BMC Immunol., 7, 17, 2006.


  • Kaur, N.; Dhuna, V.; Kamboj, S.S.; Agrewala, J.N. and Singh, J. A.
    Novel antiproliferative and antifungal lectin from Amaranthus viridis linn seeds. Protein Peptide Lett., 13, 897-905, 2006.


  • Ahmad, N.; Deeba, F.; Faisal, S.M.; Khan, A.; Agrewala, J.N.; Dwivedi, V. and Owais, M.
    Role of fusogenic non-PC liposomes in elicitation of protective immune response against experimental murine salmonellosis. Biochimie., 88, 1391-1400, 2006.


  • Rampal, P.; Saini, H.S.; Mayilraj, S. Chimni, S.S. and Chadha, B.S.
    Enantiocomplementary reduction of 3-phenylthiopropan-2-one by Bacillus sp.: Effe ct of medium components. Bioresource Technology, 98, 725-728.


  • Mayilraj, S.; K. Suresh; Kroppenstedt, R.M. and Saini, H.S.
    Dietzia kunjamensis sp. nov., isolated from the Indian Himalayas. Int. J. Syst. Evol. Microbiol., 56, 1667-1671, 2006.


  • Mayilraj, S.; Saha, P., K. Suresh and Saini, H.S.
    Ornithinimicrobium kibberense sp. nov., isolated from the Indian Himalayas. Int. J. Syst. Evol. Microbiol., 56, 1657-1661, 2006.


  • K. Suresh; Mayilraj, S and Chakrabarti, T.
    Effluviibacter roseus gen. nov., sp. nov., isolated from muddy water, belonging to the family .Flexibacteraceae.. Int. J. Syst. Evol. Microbiol., 56, 1703-1707,2006.


  • Kim, J.K.; Raghava, G.P.S.; Bang, S. and Choi, S.
    Prediction of subcellular localization of proteins using pairwise sequence alignment and support vector machin. Pattern Recogn. Lett., 27, 996-1001, 2006.


  • Chandra,R.; Ghosh, A.; Jain, R.K. and Singh, S..
    Isolation and characterization of two potential pentachlorophenol degrading aero bic bacteria from pulp paper effluent sludge. J. Gen. Appl. Microbiol., 52, 125- 130, 2006.


  • Singh,O.V.; Ghai, S.; Paul, D. and Jain R.K.
    Genetically modified crops: success, safety assessment, and public concern. Appl Microbiol Biotechnol., 71, 598-607, 2006.


  • Wang, H.; Nicholas, M.W.; Conway, K.L.; Sen, Pradip; Diz, R.; Tisch, R.M. and Cl arke, S.H.
    EBV latent membrane protein 2A induces autoreactive B cell activation and TLR hy persensitivity. J. Immunol., 177, 2793-2802, 2006.


  • Paul, D.; Pandey, G.; Meier, C.; Meer, J.R. and Jain, R.K.
    Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation. FEMS Microbiol E col., 57, 116-27, 2006.


  • Patnaik, P.R.
    Dispersion optimization to enhance PHB production in fed-batch cultures of Ralstonia eutropha. Bioresource Tech., 97, 1994-2001, 2006.


  • Singh, S.; Kaur, G.; Chakraborti, A.K.; Jain, R.K. and Banerjee, U.C.
    Study of the experimental conditions for the lipase production by a newly isolated strain of Pseudomonas aeruginosa for the enantioselective hydrolysis of (ñ)methyl trans-3(4-methoxyphenyl) glycidate. Bioprocess Biosyst. Eng., 28, 341-348, 2006.


  • Saha, S. and Raghava, G.P.S.
    Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins: Structure, Function and Bioinformatics, 65, 40-48, 2006.


  • Sharma, P. and Mondal, A.K.
    Evidence that the MAPK-docking site in MAPKK Dpbs2p is essential for its function. Biochem. Biophy. Res. Comm., 346, 562-566, 2006.


  • Lama, A.; Pawaria, S. and Dikshit, K.L.
    Oxygen binding and NO scavenging properties of truncated hemoglobin, HbN, of Mycobacterium smegmatis. FEMS Letters, 580, 4031-4041, 2006.


  • Mayilraj, S.; Korpole, S.; Schumann, P.; Kroppenstedt, R.M. and Saini, H.S.
    Agrococcus lahaulensis sp. nov., a new member of the genus Agrococcus, isolated from a cold desert of the Himalayas, India. Int. J. Syst. Evol. Microbiol. 56, 1807-1810, 2006


  • Mayilraj, S.; Kroppenstedt, R.M.; Korpole, S. and Saini, H.S.
    Kocuria himachalensis sp. nov., a novel actinobacterium isolated from the Himalayas, India. Int. J. Syst. Evol. Microbiol. 56, 1971-1975, 2006


  • Ghosh, A.; Paul, D.; Prakash, D.; Mayilraj, S. and Jain R.K.
    Rhodococcus imtechensis sp. nov., a novel species isolated from pesticide contaminated soil. Int. J. Syst. Evol. Microbiol. 56, 1965-1969, 2006.


  • Patnaik P.R.
    Neural network configurations for filtering of feed stream noise from oscillating continuous microbial fermentations. Bioautomation, 4, 45-56, 2006.


  • Ha, S.W.; Tetsuo, A. and Kishore, R.
    Distinctive influence of two hexafluoro solvents on the structural stabilization of Bombyx mori silk fibroin protein and its derived peptides: 13C NMR and CD studies. Biomacromolecules, 7, 18-23, 2006.


  • Thakur, A.K. and Kishore, R.
    Characterization of
    b-turn and Asx-turn mimicry in a model peptide: Stabilization via C-H….O interaction. Biopolymers, 81, 440-449, 2006.


  • Saha, S and Raghava, G.P.S.
    AlgPred: Prediction of allergenic proteins and mapping of IgE Epitopes. Nucleic Acids Research, 34, W202-209, 2006.


  • Saha, S. and Raghava, G.P.S.
    VICMpred: SVM-based method for the prediction of the functional proteins of gram-negative bacteria using amino acid patterns and composition. Genomics Proteomics and Bioinformatics, 4, 42-47, 2006.


  • Kaur, H. and Raghava, G.P.S.
    Prediction of C
    -H...O and C-H...π interactions in proteins using recurrent neural network. In Silico Biol., 6, 11, 2006.


  • Basu,J.M.; Mookerjee, A; Sen, P.; Bhaumik, S.; Sen, Pradip; Banerjee, S.; Naskar, K.; Choudhuri, S.K.; Saha,B.; Raha,S. and Roy, S.
    Sodium antimony gluconate induces generation of reactive oxygen species and nitric oxide via phosphoinositide 3-kinase and mitogen-activated protein kinase activation in Leishmania donovani-Infected mcrophages. Antimicrob Agents Chemotherapy, 50, 1788-97, 2006.


  • Mayilraj, S.; Krishnamurthi, S.; Saha, P. and Saini, H.S.
    Kitasatospora sampliensis sp. nov., a novel actinobacterium isolated from soil of a sugar-cane field in India. Int J Syst Evol Microbiol., 56, 519-522, 2006.


  • Mayilraj, S.; Krishnamurthi, S.; Saha, P. and Saini, H.S.
    Rhodococcus kroppenstedtii sp. nov., a novel actinobacterium isolated from a cold desert of the Himalayas, India. Int J Syst Evol Microbiol., 56, 979-982, 2006.


  • Sonavane, V.C.
    Enzymatic modifications of cephalosporins by cephalosporin acylase and other enzymes. Crit. Rev. Biotechnol., 26, 1-26, 2006.


  • Raychaudhuri, S.; Jain, V. and Donger, M.
    Identification of a constitutively active variant of LuxO that affects production of HA/protease and biofilm development in a non-O1, non-O139 Vibrio cholerae O110. Gene, 369, 126-133, 2006.


  • Mehta, R.K. and Singh, J.
    A truncated derivative of nmt1 promoter exhibits temperature-dependent induction of gene expression in Schizosaccharomyces pombe. Yeast, 23, 55-65, 2006.


  • Kumar, M.; Verma, R. and Raghava, G.P.S.
    Prediction of mitochondrial proteins using support vector machine and hidden markov model. J. Biol. Chem., 281, 5357-5363, 2006.


  • Singh, M.K.; Srivastava, S.; Raghava, G.P.S. and Varshney, G.C.
    HaptenDB: A comprehensive database of haptens, carrier proteins and anti- hapten antibodies. Bioinformatics, 22, 253-255, 2006.


  • Au, T.K.; Agrawal, P. and Harshey, R. M.
    Chromosomal integration mechanism of infecting Mu virion DNA. J. Bacteriol., 188, 1829-1834, 2006.


  • Patnaik, P.R.
    Synthesizing cellular intelligence and artificial intelligence for bioprocesses. Biotech. Adv., 24,
    129-133, 2006.


  • Patnaik, P.R.
    Hybrid filtering to rescue stable oscillations from noise-induced chaos in continuous of budding yeast. FEMS Yeast Res., 6, 129-138, 2006.


  • Biswas, K. and Prasad.G.S.
    Molecular methods for characterization of yeasts associated with fermented foods and beverages. In: Frontiers in Plant Sciences. (Ed. Mukherjee, K.G. et al..) I.K. International Publishing House, New Delhi, India. 355-372


  • G.S.Prasad. Sequence analysis of internal transcribed spacer region
    for phylogenetic assessment of ascomycetous yeasts. In: Microbial Diversity: Current Perspectives and Potential Applications. (Ed. Satyanarayana.T. and Johri.B.N.) I.K. International Publishing House, New Delhi, India. 149-164.




PUBLICATIONS DURING 2005


  • Singla, A.K.;Mayilraj, S.; Kudo Takuji; Krishnamurthi, S.; Prasad, G.S. and Vohra, R.M.
    Actinoalloteichus spitiensis sp. nov., a novel actinobacterium isolated from a cold desert of the Indian Himalayas. Int J Syst Evol Microbial, 55, 2561-2564, 2005.


  • Saha, S., Bhasin, M and Raghava, G.P.S (2005)
    Bcipep: A database of
    b-cell epitope. BMC Genomics, 6(1): 79.


  • Deshpande, A.; Nimsadkar, S. and Mande S.C.
    Effect of alcohols on protein hydration - crystallographic analysis of hen egg-white lysozyme in the presence of alcohols. Acta Crystallographica d-biological crystallography, 61, 1005-1008, 2005.


  • Vats, P.; Bhattacharyya, M.S. and Banerjee,U.C.
    Use of phytases (myo-inositolhexakisphosphate phosphohydrolases) for combating environmental-pollution - a biological approach. Crit. Rev. Env. Sci. Technol., 35, 469-486, 2005.


  • Rai, H.S.; Bhattacharyya,M.S.; Singh,J.; Bansal,T.K.; Vats,P. and Banerjee,U.C.
    Removal of dyes from the effluent of textile and dyestuff manufacturing-industry - a review of emerging techniques with reference to biological treatment. Crit. Rev. Env. Sci. Technol., 35, 219-238, 2005.


  • Baghel, V.S.; Tripathi, R.D.; Ramteke, P.W.; Gopal, K.; Dwivedi, S.; Jain, R.K. Rai,U.N. and Singh, S.N.
    Psychrotrophic proteolytic bacteria from cold environment of gangotri glacier, western himalaya, India. Enz. Microbial Technol., 36, 654-659, 2005.


  • Bhasin, M. and Raghava, G.P.S.
    MHCBN: A comprehensive database of MHC/TAP binders/non-binders and T-cell epitopes. Nucleic Acids Res. (online; http://www3.oup.co.uk/nar/database/summary/702) 2005.


  • Singh, M.K.; Srivastava, S.; Raghava, G.P.S. and Varshney, G.C.
    HaptenDB: A database of hapten molecules. Nucleic Acids Res. (online; http://www3.oup.co.uk/nar/database/summary/682) 2005.


  • Shivaji, S.; Reddy, G.S.N.; Suresh, K.; Gupta, P.; Chintalapati, S.; Schumann, P.; Stackebrandt, E. and Matsumoto, G.I.
    Psychrobacter vallis sp. nov. and Psychrobacter aquaticus sp. nov. from Antarctica. Int. J. Syst. Evol. Microbiol, 55, 757-762, 2005.


  • Shivaji, S.; Chaturvedi, P.; Reddy, G.S.N. and Suresh, K.
    Pedobacater himalayenisis sp. nov., from Hamta glacier located in the Himalayan mountain ranges of India. Int. J. Syst. Evol. Microbiol, 55, 1053-1088, 2005.


  • Kroppestedt, R. and Mayilraj
    Eight new species of the genus Micromonosproa, M. cirea sp. nov. M. echinaurantica sp. nov. M. echinofusca sp. nov., M. fulviviridis sp. nov., M. inyonensis sp.nov., M.peucltica sp. nov., M.sagamiensis sp. nov., and M. viridifaciens sp. nov. syst. Appl. Microbiol, 28, 328-339, 2005.


  • Saxena, R. and Chakraborti, P.K.
    The carboxy-terminal end of the peptide deformylase from Mycobacterium tuberculosis is indispensable for its enzymatic activity. Biochem. Biophys. Res. Commun., 332, 418-425, 2005.


  • Patnaik, P. R.
    Application of the lyapunov exponent to detect noise-induced chaos in oscillating microbial cultures. Chaos Solitons Fractals, 26, 759-765, 2005.


  • Labana, S.; Singh, O.V.; Basu, A.; Pandey, G. and Jain, R.K.
    A microcosm study on bioremediation of p-nitrophenol contaminated soil using Arthrobacter protophormiae RKJ100. Appl. Microbiol. Biotechnol.,68, 417-424, 2005.


  • Garg, A.; Kaur. H. and Raghava, G.P.S.
    Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure. Proteins: Structure, Function and Bioinformatics, 61, 318-324, 2005.


  • Saxena, R. and Chakraborti, P.K.
    Identification of regions involved in enzymatic stability of peptide deformylase of Mycobacterium tuberculosis. J. Bacteriol., 187, 8216-8220, 2005.


  • Patnaik, P.R.
    Perspectives in the modeling and optimization of PHB production by pure and mixed cultures. Critical Reviews in Biotechnology, 25, 153-171, 2005.


  • Sahoo, D.K. and Gupta, R.
    Evaluation of ligninolytic microorganisms for efficient decolorization of a small pulp and paper mill effluent. Process Biochem, 40, 1573-1578, 2005.


  • Bhasin, M. and Raghava, G.P.S.
    Pclavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences. Nucleic Acids Res., 33, W202-7, 2005.


  • Kumar, M.; Bhasin, M.; Natt, N.K. and Raghava, G.P.S.
    BhairPred: Prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques. Nucleic Acids Res., 33, W154-9, 2005.


  • Asakura, T.; Ohgo, K.; Ishida, T.; Taddei, P.; Monti, P. and Kishore, R.
    Possible implications of serine and tyrosine residues and intermolecular interactions on the appearance of silk I structure of Bombyx mori silk fibroin-derived synthetic peptides: high resolution 13C cross-polarization/magic-angle spinning NMR study. Biomacromolecules, 6, 468-474, 2005.


  • Patnaik, P.R.
    Who wants biochemical engineers. Curr. Science, 88, 1019-1019, 2005.


  • Vats, P. and Baneerjee, U.C.
    Biochemical characterisation of extracellular phytase (myo-inositol hexakisphosphate phosphohydrolase) from a hyper-producing strain of Aspergillus niger van Teighem. J Ind Microbiol Biotechnol, 32, 141-147, 2005.


  • Shafiani, S.; Sharma, P.; Vohra, R.M. and Tiwari, R.
    Cloning and characterisation of aspartate-beta-semialdehyde dehydrogenase from Mycobacterium tuberculosis H37 Rv. J Appl Microbiol, 98, 832-838, 2005.


  • Sharma, P.; Meena, N.; Aggarwal, M. and Mondal, A.K.
    Debaryomyces hansenii, a highly osmo-tolerant and halo-tolerant yeast, maintains activated Dhog 1p in the cytoplasm during its growth under severe osmotic stress.Curr. Genet., Aug. 10, 1-9, 2005.


  • Saha, S.; Bhasin, M. and Raghava, G.P.S.
    BCIpep: A database of B-cell epitopes. Nucleic Acids Res. (online; http://www3.oup.co.uk/nar/database/summary/642), 6(1), 79, 2005.


  • Bhasin, M. and Raghava, G.P.S.
    GPCRsclass: A web tool for classification of amine type of G-protein coupled receptors. Nucleic Acids Res., 33, W143-7, 2005.


  • Saha, P.; Krishnamurthi, S.; Mayilraj, S.; Prasad, G.S. and Chakrabarti, T.
    Aquimonas voraii gen. nov., sp. nov., a new gamma proteobacterium isolated from a warm spring of Assam, India. Int. J. Syst. Evol. Microbiol., 55, 1491-5, 2005.


  • Gupta, S.; Chakraborti, P.K. and Sarkar, D.
    Nucleotide induced conformational change in the catalytic subunit of the phosphate specific transporter from M. tuberculosis: Implications for the ATPase structure. Biochem. Biophys. Acta, 1750, 112-121, 2005.


  • Labana, S.; Pandey. G.; Paul, D.; Basu, A. and Jain, R.K.
    Pot and field studies on bioremediation of p-nitrophenol contaminated soil using Arthrobacter protophormiae RKJ100. Environ. Sci. Technol., 39, 3330-7, 2005.


  • Srikanth, C.V.; Vats, P.; Bourbouloux, A.; Delrot, S. and Bachhawat, A.K.
    Multiple cis-regulatory elements and the yeast sulphur regulatory network are required for the regulation of the yeast glutathione transporter, Hgt1p. Curr. Genet., 47, 345-58, 2005.


  • Ganduri, V.S.R.K.; Ghosh, S. and Patnaik, P. R.
    Optimal mixing to improve the performance of batch and continuous fermentations with recombinant Escherichia coli. J. Chem. Technol. Biotechnol., 80, 361-370, 2005.


  • Patnaik, P. R.
    The external kalman filter as a noise modulator for continuous yeast cultures under monotonic, oscillating and chaotic conditions. Chem. Engg. J., 108 , 361-370, 2005.


  • Praveen Kumar; Verma, A.; Saini, A.K.; Chopra, P.; Chakraborti, P.K.; Singh, Y. and Chowdhury, S.
    Nucleoside diphosphate kinase from Mycobacterium tuberculosis cleaves single strand DNA within the human c-myc promoter in an enzyme-catalyzed reaction. Nucleic Acids Research, 33, 2707-14, 2005.


  • Bhasin, M.; Garg, A. and Raghava, G.P.S.
    PSLpred: Prediction of subcellular localization of bacterial proteins, Bioinformatics, 21, 2522-4, 2005.


  • Johri B.N., Ganguly B.N., Goel S.K., Virdi J.S., Tripathi A.K., Jain R.K., Kamra D.N. and Bhatnagar A.
    Microorganism diversity: Strategy and action plan. Current Science, 89, 151-154, 2005.


  • Jain, R.K.; Kapur, M., Labana, S.; Lal, B., Sarma, P.M., Bhattacharya, D. and Thakur, I.S.
    Microbial Diversity: Application on micro-organisms for the biodegradation of xenobiotics. Current Science, 89, 101-112, 2005.


  • Brains, J.S.; Dhuna, V.; Singh, J.; Kamboj, S.S.; Nijjar, K.K. and Agrewala, J.N.
    Novel lectins from rhizomes of two Acorus species with mitogenic activity and inhibitory potential towards murine cancer cell lines. Int Immunopharmacol, 9, 1470-8, 2005.


  • Brains, J.S.; Singh, J.; Kamboj, S.S.; Nijjar, K.K.; Agrewala, J.N.; Kumar, V.; Kumar, A. and Saxena, A.K.
    Mitogenic and anti-proliferative activity of a lectin from the tubers of Voodoo lily (Sauromatum Venosum). Biochim Biophys acta, 1723, 163-74, 2005.


  • Patnaik, P.R.
    Process analysis in a disturbed environment during oscillatory metabolism of Saccharomyces cerevisiaeInd. J. Biotechnol., 80, 361-370, 2005.


  • Sonawane, V.C.
    A mini-scale method for assay of D-amino acid oxidase activity in Trigonopsis variabilis against cephalosporin C.Biocatalysis Biotransformation, 23, 1-5, 2005.


  • Paul, D.; Pandey, G.; Pandey, J. and Jain, R.K.
    Accessing microbial diversity for bioremediation and environmental restoration. Trends Biotechnol., 23, 135-42, 2005.


  • Labana, Sumeet; Pandy, G. and Jain, R.K.
    Desulfurization of dibenzothiophene and diesel oils by bacteria. Lett. Appl. Microbiol., 40, 159-63, 2005.


  • Paul, D.; Pandey, G. and Jain, R.K.
    Suicidal of genetically engineered microorganisms for bioremediation: Need and perspective. Bioessays, 27, 563-73, 2005.


  • Dahiya, M.; Rajamohan, G. and Dikshit, K.L.
    Enhanced plasminogen activation by staphylokinase in the presence of streptokinase
    b-/bg domains: Plasminogen kringles play a role. FEBS Lett., 579, 1565-72, 2005.


  • Garg, A.; Bhasin, M. and Raghava, G.P.S.
    SVM-based method for subcellular localization of human proteins using amino acid compositions, their order and similarity search J. Biol. Chem., 280, 14427-32, 2005.


  • Pimenta, R.S.; Alves, P.D.D.; Correa, A. Jr.; Lachance, M.A., Prasad, G.S.; Rajaram, B.R.; Sinha, R.P. and Rosa, C.A.
    Geotrichum silvicola sp. nov., a novel asexual arthroconidial yeast species related to the genus Galactomyces. Int. J. Syst. Evol. Microbiol., 55, 497-501, 2005.


  • Pandey. G.; Paul, D. and Jain, R.K.
    Conceptualizing “suicidal genetically engineered microorganisms” for bioremediation applications. Biochem. Biophys. Res. Commun., 327, 637-9, 2005).


  • Mayilraj, S.; Prasad, G.S.; Suresh, K.; Saini, S.H.; Shivaji, S. and Chakrabarti, T.
    Planococcus stackebrandtii sp. nov.; isolated from a cold desert of the Himalayas, India. Int. J. Syst. Evol. Microbiol., 55, 91-94, 2005.


  • Prasad, G.S.; Mayilraj, S.; Sood, N.; Singh, V.; Biswas, K. and Lal, B.
    Candida digboiensis sp. nov., a novel anamorphic yeast species from an acidic tar sludge-contaminated oilfield. Int. J. Syst. Evol. Microbiol., 55, 967-972, 2005.


  • Prabagaran, S.R.; Suresh, K.; Manorama, R.; Delille, D. and Shivaji, S.
    Marinomonas ushuaiensis sp. nov., isolated from coastal sea water in Ushuaia, Argentina, sub-Antarctica. Int. J. Syst. Evol. Microbiol., 55, 309-313, 2005.


  • Radha Kishan, K.V.; Vohra, R.M.; Ganesan, K.; Agrawal, V.; Sharma, V.M. and Sharma, R.
    Molecular structure of D-hydantoinase from Bacillus sp. AR9: Evidence for mercury inhibition. J. Mol. Biol., 347, 95-105, 2005.


  • Srikanth, C.V.; Chakraborti, A.K. and Bachhawat, A.K.
    Acetaminophen toxicity and resistance in the yeast Saccharomyces cerevisiae. Microbiology, 151, 99-111, 2005.


  • Ganduri, V.S.R.K.; Ghosh, S. and Patnaik, P. R.
    Mixing control as a device to increase PHB production in batch fermentations with co-cultures of L. delbrueckii and R. eutropha. Process Biochem, 40, 257-264, 2005.


  • Verma, S.; Patel, S.; Kaur, R.; Stark, B.C.; Dikshit, K.L. and Webster, D.A.
    Mutational study of the bacterial hemoglobin distal heme pocket. Biochem. Biophys. Res. Commun., 326, 290-7, 2005.


  • Sharma, P. and Mondal, A.K.
    Evidence that C-terminal non-kinase domain of Pbs2p has a role in high osmolarity-induced nuclear localization of Hog1p. Biochem. Biophys. Res. Commun., 328, 906-13, 2005.


  • Aggarwal, M.; Bansal, P.K. and Mondal, A.K.
    Molecular cloning and biochemical characterization of a 3Â’(2Â’),5Â’-bisphosphate nucleotidase from Debaryomyces hansenii. Yeast, 22, 457-470, 2005.


  • Raghava, G.P.S. and Han, J.H.
    Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein. BMC Bioinformatics, 6, 59, 2005.


  • Patnaik, P.R.
    Neural network designs for poly-beta-hydroxybutyrate production optimization under simulated industrial conditions. Biotechnol. Lett., 27, 409-15, 2005.


  • Mukherjee, S. and Guptasarma, P.
    Direct proteolysis-based purification of an overexpressed hyperthermophile protein from Escherichia coli lysate: A novel exploitation of the link between structural stability and proteolytic resistance. Protein Expr. Purif., 40, 71-6, 2005.


  • Kishan, K.V. and Agrawal, V.
    SH3-like fold proteins are structurally conserved and functionally divergent. Curr. Protein Pept. Sci., 6, 143-50. 2005.


  • Ghosh Amit
    Exploiting Microbial Diversity in Biodiversity: Status and Prospects. Ed. Tandon, P.; Sharma, M. and Swarup, R. Narosa Publishing House, New Delhi, 2005.


  • Ghosh Amit
    Emergence and Reemergence of Infectious Diseases: The Cholera Paradigm, in Glimpses of the work on Environment and Development in India (ed. Singh, J.S. and Sharma, V.P.), Angkor Publishers Pvt. Ltd., Noida, pp. 273-291, 2005.


  • Nandanwar, H.; Hoondal, G.S. and Vohra, R.M.
    Enzymatic production of D-amino acids. Chapter 5, pp. 91-104, Series: Methods in Biotechnology, volume 17, Humana Press, USA.




PUBLICATIONS DURING 2004


  • Saha, S., and Raghava, G.P.S.
    BcePred: Prediction of Continous
    b-cell Epitopes in Antigenic Sequences using Physico-chemical Properties. In G. Nicosia, V. Cutello; P.J. Bentley and J. Bentley and J.Tinis(Eds). ICARIS 2004, 2NCS 3239, 197-204, Springer,2004.


  • Issac, B. and Raghava, G.P.S.
    EGPred: Prediction of eukaryotic genes using ab initio methods after combining with sequence similarity approaches. Genome Research, 14, 1756-66, 2004.


  • Bhasin, M., and Raghava, G.P.S.
    ESLpred: SVM Based Method for Subcellular Localization of Eukaryotic Protein s using Dipeptide Composition and PSI-BLAST. Nucleic Acids Research, 32, 414-9, 2004.


  • Bhasin, M., and Raghava, G.P.S.
    GPCRpred: An SVM based method for prediction of families and subfamilies of G-protein coupled receptors. Nucleic Acids Research, 32, W383-9, 2004.


  • Kaur, H. and Raghava, G. P.S.
    Prediction of
    b-turns in proteins using PSI-BLAST profiles and secondary structure information. Proteins, 55, 83-90, 2004.


  • Bhasin, M. and Raghava, G.P.S.
    SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence. Bioinformatics, 12, 421-3, 2004.


  • Tiwari, Sangeeta; Radha Kishan, K.V.; Chakrabarti, T. and Chakraborti, P.K.
    Amino acid residues involved in autophosphorylation and phosphotransfer activities are distinct in nucleoside diphosphate kinase from Mycobacterium tuberculosis. J. Biol. Chem., 279,
    43595-43603, 2004.


  • Bhasin, M. and Raghava, G.P.S.
    Classification of nuclear receptors based on amino acid composition and dipeptide composition. J. Biol. Chem., 279, 23262-6, 2004.


  • Bhasin, M. and Raghava, G.P.S.
    Analysis and prediction of affinity of TAP binding peptides using Cascade SVM. Protein Science, 13, 596-607, 2004.


  • Sharma, D.; Issac, B.; Raghava, G.P.S. and Ramaswamy, R.
    Spectral Repeat Finder (SRF): Identificatgion of repetitive sequences using fourier transformation. Bioinformatics, 20, 1405-1412, 2004.


  • Natt, N.K.; Kaur, H. and Raghava, G.P.S.
    Prediction of transmembrane regions of beta-barrel proteins using ANN and SVM based method. Proteins: Structure, Function and Bioinformatics, 56, 11-8, 2004.


  • Vats, P. and Banerjee, U.C.
    Production studies and catalytic-properties of phytases (myo-inositolhexakisphosphate phosphohydrolases)- An overview. Enzyme Microbial. Technol., 35, 3-14, 2004.


  • Bhasin, M. and Raghava, G.P.S.
    Prediction of CTL epitopes using QM, SVM and ANN techniques. Vaccine, 22, 3195-204, 2004.


  • Kaur, H. and Raghava, G.P.S.
    Role of evolutionary information in prediction of aromatic-backbone NH interactions in proteins. FEBS letters, 564, 47-57, 2004.


  • Singh, Pooja and Cameotra, Swaranjit Singh.
    Potential applications of microbial surfactants in biomedical sciences. Trends Biotechnol., 22, 142-146, 2004.


  • Sharma, N. and Agrewala, J.N.
    Potent role of the vaccines prepared from macrophages infected with live bacteria in protection against M. tuberculosis and S. typhimurium infections. J. Infect. Dis., 190, 107-114, 2004.


  • Bhadbhade, M.M. and Kishore, R.
    An observation of non-superimposible stereogeometrical features in non-chiral one-component
    b-Ala model peptide. Biochem. Biophys. Res. Commun., 316, 1029-1036, 2004.


  • Shukla, A. and Guptasarma, P.
    Folding of
    b/a-unit scrambled forms of S. cerevisiae triosephosphate isomerase: Evidence for autonomy of substructure formation and plasticity of hydrophobic and hydrogen bonding interactions in core of (b/a)8-barrel. Proteins, 55, 548-557, 2004.


  • Singh, Pooja; Suri, C.R. and Cameotra, Swaranjit Singh.
    Isolation and characterization of a bacterial strain capable of degrading atrazine. Biochem. Biophys. Res. Commun., 317, 697-702, 2004.


  • Kundu, B.; Shukla, A.; Chaba, R. and Guptasarma, P.
    The excised heat-shock domain of alpha-B crystallin is a folded, proteolytically susceptible trimer with significant surface hydrophobicity and a tendency to self-aggregate upon heating. Protein Expr. Purif., 36, 263-271, 2004.


  • Singh, K.V.S.; Kaur, J.; Varshney, G.C.; Raje, M. and Suri, C.R.
    Synthesis and characterisation of hapten-protein conjugates for antibody production against small molecules. Bioconjugate Chem., 15, 168-73, 2004.


  • Kaur, J.; Singh, K.V.; Raje, M.; Varshney, G.C. and Suri, C.R.
    Strategies for direct attachment of hapten to a polystyrene support for applications in enzyme-linked immunosorbent assay (ELISA). Analytica Chimica Acta, 506, 133-135, 2004.


  • Kaur, J.; Singh, K.V.S.; Schmid, A.H.; Varshney, G.C.; Suri, C.R. and Raje, M.
    Atomic force spectroscopy-based study of antibody pesticide interactions for characterisation of immunosensor surface. Biosensors Bioelectronics, 20, 284-293, 2004.


  • Moniaux, N.; Varshney, G.C.; Chauhan, S.C.; Copin, M.C.; Jain, M.; Wittel, U.A.; Andrianifahanana, M.; Aubert, Jean-Pierre and Batra, S.K.
    Generation and characterisation of anti-MUC4 monoclonal antibodies reactive with normal and cancer cells in humans. J. Histochem. Cytochem., 52, 253-261, 2004.


  • Shukla, A.; Mukherjee, S.; Sharma, S.; Agrawal, V.; Radha Kishan K.V. and Guptasarma, P.
    A novel UV laser-induced visible blue radiation from protein crystals and aggregates: Scattering artifacts or fluorescence transitions of peptide electrons delocalized through hydrogen bonding? Archives Biochem. Biophys., 428, 144-153, 2004.


  • Kaur, H. and Raghava, G.P.S.
    A neural network method for prediction of beta-turn types in proteins using evolutionary information. Bioinformatics, 20, 2751-8, 2004.


  • Singh, Pooja and Cameotra, Swaranjit Singh.
    Enhancement of metal bioremediation by use of microbial surfactants. Biochem. Biophys. Res. Commun., 319, 291-297, 2004.


  • Cameotra, Swaranjit Singh and Makkar, R.S.
    Recent applications of biosurfactants as biological and immunological molecules. Current Opinion Microbiol., 7, 262-266, 2004.


  • Patnaik, P.R.
    Influence of fluid mixing on oscillations in recombinant fermentations with variable plasmid loss. A preliminary study. React. Kinet. Catal. Lett., 83, 261-268, 2004.


  • Patnaik, P.R.
    Neural and hybrid neural modelling and control of fed-batch fermentation for streptokinase: Comparative evaluation under nonideal conditions. Can. J. Chem. Engng., 82, 599-607, 2004.


  • Patnaik, P.R.
    A lyapunov comparison of noise-filtering methods for oscillating yeast cultures. A. I. Ch. E. J., 50,
    1640-1646, 2004.


  • Patnaik, P.R.
    How effective is the extended kalman filter for continuous yeast cultures affected by both inflow and measurement noise?. Current Sci., 86, 999-1007, 2004.


  • Sutar, R.; Joseph K. David; Ganesan, K.; Ghosh, A.K.; Singhi, S.; Chakrabarti, A. and Bachhawat, A.K.
    Comparison of ITS and IGS1 region for strain typing of clinical and non-clinical isolates of Pichia anomala. J. Med. Microbial., 53, 119-23, 2004.


  • Kohli, D.; Srikanth, C.V. and Bachhawat, A.K.
    A search tool for identification and analysis of conserved sequence patterns in Saccharomyces sp. orthologous promoters. In Silico Biology, 3, 34, 2004.


  • Zhang, M.Y.; Bourbouloux, A.; Cagnac, O.; Srikanth, C.V.; Rentsch, D.; Bachhawat, A.K. and Delrot, S.
    A novel family of transporters mediating the transport of glutathione derivatives in plants. Plant Physiology, 134, 482-91, 2004.


  • Taneja, V.; Paul, S. and Ganesan, K.
    Directional ligation of long-flanking homology regions to selection cassettes for efficient targeted gene-disruption in Candida albicans. FEMS Yeast Res., 4, 841-847, 2004.


  • Singh, Jasvir; Vohra, R.M. and Sahoo, D.K.
    Enhanced production of alkaline proteases by Bacillus sphaericus using fed-batch culture. Process Biochem., 39, 1093-1101, 2004.


  • Kaul, P.; Banerjee, A.; Mayilraj, S. and Banerjee, U.C.
    Screening for enantioselective nitrilases: Kinetic resolution of racemic mandelonitrile to R-(-) mandelic acid by new bacterial isolates. Tetrahedron: A symmetry, 15, 207-211, 2004.


  • Vats, P.; Sahoo, D.K. and Banerjee, U.C.
    Studies on the production of phytases (myoinositolhexakisphosphate phosphohydrolases) by Aspergillus niger van teigham in laboratory fermenter. Biotechnology Progress, 20, 737-743, 2004.


  • Paul, D.; Chauhan, A.; Pandey, G. and Jain, R.K.
    Pathway for the degradation of p-hydroxybenzoate in Arthrobacter protophormiae RKJ100 and Burkholderia cepacia RKJ200. Current Science, 87, 1263-1268, 2004.


  • Kapur, M. and Jain, R.K.
    Microbial diversity: Exploring the unexplored. World Federation of Culture Collection (WFCC) Newsletter, 39, 12-16, 2004.


  • Jain, R.K.
    Bioremediation of pesticide contaminated soils and its effect on soil functionality. Indian Network for Soil Contaminated Research (INSCR) Newsletter, 4, 1-3, 2004.


  • Rani, S.; Swarupa, I.; Kunwar, K.; Prasad, G.S. and Manoharachary, C.
    Glomus hyderabadensis, a new species: Its taxonomy and phylogenetic comparison with related species. Mycotaxon, 89, 245-253, 2004.


  • Kishore, R.
    b-Ala containing peptides: Potentials in design and construction of bioactive peptides and protein secondary structure mimics. Current Protein Peptide Sciences, 5, 435-455, 2004.


  • Kumar, R. and Singh, J.
    Expression and secretion of a prokaryotic protein streptokinase without glycosylation and degradation in Schizosaccharomyces pombe. Yeast, 21, 1343-58, 2004.


  • Yao, Juming; Ohgo, K.; Sugino, R.; Kishore, R. and Asakura, T.
    Structural analysis of Bombyx mori silk fibroin peptides with formic acid treatment using high-resolution solid-state 13C NMR strectroscopy. Biomacromolecules, 5, 1763-1769, 2004.


  • Dash, P.K.; Parida, M.M.; Saxena, P.; Kumar Manoj; Rai, A.; Pasha, S.T. and Jana, A.M.
    Emergence and continued circulation of dengue-2 (genotype IV) virus strains in northern India. J. Med. Virol., 74, 314-322, 2004.


  • Kumar Manoj; Pasha, S.T.; Mittal, V.; Rawat, D.S.; Arya, S.C.; Agarwal, N.; Bhattacharya, D.; Shiv Lal and Rai, A.
    Unusual emergence of guate98-like molecular subtype of DEN-3 during 2003 dengue outbreak in Delhi. Dengue Bulletins, 28, 161-167, 2004.


  • Suresh, K.; Reddy, G.S.N.; Sengupta, S. and Shivaji, S.
    An arsenic resistance bacteria Deinococcus sp. nov., indicus from an aquifer from West Bengal. Int. J. Syst. Evol. Microbiol., 54, 457-461, 2004.


  • Suresh, K.; Prabagaran, S.R.; Sengupta, S. and Shivaji, S.
    An arsenic resistance bacteria Bacillus indicus sp. nov., from an aquifer from West Bengal. Int. J. Syst. Evol. Microbiol., 54, 1369-1375, 2004.


  • Singh, B.
    PepBuild: A web server for building structure data of peptides / proteins. Nucleic Acid Research, 32, 559-561, 2004.


  • Luthra-Guptasarma, M. and Singh, B.
    HLA-B27 lacking associated beta2-microglobulin rearranges to auto-display or cross-display residues 169-181: A novel molecular mechanism for spondyloarthropathies. FEBS Lett., 575, 1-8, 2004.


  • Pathania, R.; Rajamohan, G. and Dikshit, K.L.
    Novel hemoglobis of M. Tuberculosis : Role in pathogenicity and cellular metabolism. In “Deep Roots Open Skies: New Biology in India” Eds Basu, S.K., Batra, K.K. and Salunake, D.M., pp. 163-166, 2004.


  • Ghosh Amit
    Class I Integrons, SXT Elements, gyrA mutations and plasmid carriage in antibiotic resistance starins of V. fluvialis, isolated in Calcutta. (Virk, R. and Srinivasan, V.) Proceedings of the 40th Anniversary Meeting of the US-Japan Co-op Medical Sciences programme, Kyoto, Japan, 2004.


  • Issac, B. and Raghava, G.P.S.
    FASTA servers for sequence similarity search. Proteomics Handbook, edited by John N. Walker and published by Humana press, 2004.




PUBLICATIONS DURING 2003


  • Patnaik, P.R.
    On the performances of noise filters in the restoration of oscillatory behaviour in continuous yeast cultures. Biotech. Lett., 25, 681-685, 2003.


  • Warren, D.; Sam, M.D.; Manley, K.; Sarkar, D.; Lee, S.Y.; Abbani, M.; Wojciak, J.M.; Clubb, R.T. and Landy, A.
    Identification of the lamdba integrase surface that interacts with Xis reveals a residue that is also critical for Int dimer formation. Proc. Natl. Acad. Sci., 100, 8176, 8181, 2003.


  • Shishodia, S.; Majumdar, S.; Banerjee, S. and Aggarwal, B.B.
    Ursolic acid inhibits nuclear factor-
    kB activation induced by carcinogenic agents through suppression of IkBa kinase and p65 phosphorylation: Correlation with down-regulation of cyclooxygenase 2, matrix metalloproteinase 9, and cyclin D1. Cancer Research, 63, 4375-4381, 2003.


  • Kohli, D.K. and Bachhawat, A.K.
    CLOURE: Clustal Output Reformatter, a program for reformatting Clustal X/ Clustal W outputs for SNP analysis and molecular systematics. Nucleic Acids Research, 31, 3501, 2003.


  • Bhasin, M.; Singh, H. and Raghava, G.P.S.
    MHCBN: A comprehensive database of MHC binding and non-binding peptide. Bioinformatics, 19, 665, 2003.


  • Naresh Alpana; Saini Sharanjot & Singh Jagmohan
    Identification of Uhp1, a ubiquitinated histone-like protein, as a target / mediator of Rhp6 in mating-type silencing in fission yeast. J. Biol. Chem., 278, 9185-9194, 2003.


  • Shukla, A.; Raje, M. & Guptasarma, P.
    A backbone-reversed form of an all-beta alpha-crystallin domain from a small heat-shock protein (retro-sHSP12.6) folds and assembles into structured multimers. J. Biol. Chem., 278, 26505-26510, 2003.


  • Vasudha Sundram; Jagpreet S. Nanda; K. Rajagopal; Jayeeta Dhar; Anita Chaudhary and Girish Sahni.
    Domain truncation studies reveal that the Streptokinase-Plasmin activator complex utilizes long-range protein-protein Interactions with macromolecular substrate to maximize catalytic turn-over. J. Biol. Chem., 278, 30569, 2003.


  • Gullion, T.; Kishore, R. & Asakura, T.
    Determination of dihedral angles and local structural in peptides by 13C-2H REDOR. J. Am. Chem. Soc., 125, 7510-7511, 2003.


  • Majumdar Sekhar and Aggarwal, B.B.
    Adenosine suppresses activation of nuclear factor-kB selectively induced by tumor necrosis factor in different cell types. Oncogene, 22, 1206-1218, 2003.


  • Sahni, Girish
    Newer products from old proteins: the case of streptokinase. Med. Chem. Res., 12, 189, 2003.


  • Amita; Chowdhury, Soumya Roy; M. Thungapathra; Ramamurthy, T.; Balakrish Nair, G. & Ghosh Amit.
    Distribution of class I integrons and SXT elements in Vibrio cholerae 01 EI Tor strains isolated in Calcutta, India, before and after the Vibrio cholerae 0139 outbreak. Emerging Infectious Diseases, 9, 500-502, 2003.


  • Singh, H. and Raghava, G.P.S.
    ProPred1: Prediction of promiscuous MHC class-I binding sites. Bioinformatics, 19, 1009-14, 2003.


  • Agarwal, M.; Sahi, C.; Katiyar-Agarwal, S.; Agarwal, S.; Young, T.; Gallie, D.R.; Sharma, V.M.; Ganesan, K. & Grover, A.
    Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types. Plant Mol. Biol., 51, 543-53, 2003.


  • Kaur, H. & Raghava, G.P.S.
    Prediction of
    b-turns in proteins from multiple alignment using neural network. Protein Science, 12, 627-634, 2003.


  • Sarin, J.; Raghava, G.P.S. & Chakraborti, P.K.
    Intrinsic contributions of polar amino acid residues towards thermal stability of an ABC-ATPase of mesophilic origin. Protein Science, 12, 2118-2120, 2003.


  • Kaur, H. & Raghava, G.P.S.
    A neural-network based method for prediction of
    g-turns in proteins from multiple sequence alignment. Protein Science, 12, 923-929, 2003


  • Shukla, A.; Raje, M. & Guptasarma, P.
    A backbone-reversed all-beta polypeptide (retro-CspA) folds and assembles into amyloid nanofibres. Protein Engg., 16, 875-879, 2003.


  • Chakrabarti, A.; Ghosh, A.; Prasad, G.S.; David J.K.; Gupta, S.; Das, A.; Sakhuja, V.; Panda, N.K.; Singh, S.K.; Das S. and Chakrabarti, T.
    Apophysomyces elegans: An emerging zygomycete in India. J. Clin. Microbiol., 41, 783-788, 2003.


  • Kumar, C.; Sharma, R. and Bachhawat, A.K.
    Investigations into the polymorphisms at the ECM38 locus of two widely used S.cerevisiae S288C strains, YPH499 and BY4742. Yeast, 20, 857-63, 2003.


  • Patnaik, P.R.
    Oscillatory metabolism of Saccharomyces cerevisiae: An overview of mechanisms and models. Biotechnol. Adv., 21, 183-192, 2003.


  • Lachance, M.A.; Daniel, H.M.; Meyer, W.; Prasad, G.S.; Gautam, S.P. and Mills, K.B.
    The D1/D2 domain of the large subunit rDNA of the yeast species Clavispora lusitaniae is unusually polymorphic. FEMS Yeast Res., 4, 253-258, 2003.


  • Agarwal, V. & Kishan, K.V.R.
    OB fold: Growing bigger with functional consistency. Current Protein Peptide Science, 4, 195-206, 2003.


  • Kaur, H. & Raghava, G.P.S.
    BTEVAL: A server for evaluation of
    b-turn prediction methods. J. Bioinformatics Computational Biology, 1, 495-504, 2003.


  • Singh, K.V.S.; Kaur, J.; Varshney, G.; Raje, M. & Suri, C.R.
    An ELISA based approach to optimise elution conditions for screening antibodies against hapten. Analytical Bioanalytical Chem., 377, 220-224, 2003.


  • Kaur, R. & Raje, M.
    A solid phase method for evaluation of gold conjugate used in quantitative detection of antigen by immunogold labeling electron microscopy. J. Immunological Methods, 279, 33-40, 2003.


  • Zhao, Chenhua; Yao, Juming; Masuda, Hiromi; Kishore, R. and Asakura, T.
    Structural characterisation and artificial fiber formation of Bombyx mori silk fibroin in hexafluoro-Iso-propanol solvent system. Biopolymers, 69, 253-259, 2003.


  • Singh, O.V.; Jain, R.K. & Singh, R.P.
    Gluconic acid production under varying fermentation conditions by Aspergillus niger. J. Chem. Technol. Biotechnol., 78, 208-212, 2003.


  • Singh, O.V.; Labana, S.; Pandey, G.; Budhiraja, R. & Jain, R.K.
    Phytoremediation: An overview of metallic ion decontamination from soil. Appl. Microbiol. Biotechnol., 61, 405-412, 2003.


  • Singh, O.V. & Jain, R.K.
    Phytoremediation of toxic aromatic pollutants from soil. Appl. Microbiol. Biotechnol., 63, 128-135, 2003.


  • Moghadam, M.F.; Tandon, C.; Aggarwal, S.; Singla, S.K.; Singh, S.K.; Sharma, S.K.; Varshney, G.C. & Jethi, R.K.
    Concentration of a potent calcium oxalate monohydrate crystal growth inhibitor in the urine of normal persons and kidney stone patients by ELISA-based assay system employing monoclonal antibodies. J. Cellular Biochem., 90, 1261-1275, 2003.


  • Moniaux, N.; Varshney, G.C.; Chauhan, S.C.; Copin, M.C.; Jain, M.; Wittel, U.A.; Andrianifahanana, M. & Aubert, Jean-Pierre.
    Generation and characterisation of anti-MUC4 monoclonal antibodies reactive with normal and cancer cells in humans. J. Histochem. Cytochem., 52, 1-9, 2003.


  • Pandey, G.; Paul, D. & Jain, R.K.
    Branching of nitrobenzoate degradation pathway in Arthrobacter protophormiae RKJ100: Identification of new intermediates. FEMS Microbiology Lett., 229, 231-236, 2003.


  • Awasthi, N.; Singh, A.K.; Jain, R.K.; Khangarot, B.S. & Kumar, A.
    Degradation and detoxification of endosulfan isomers by a defined co-culture of two Bacillus strains. Appl. Microbiol. Biotechnol., 62, 279-283, 2003.


  • Suvas, S.; Vohra, H. and Agrewala, J.N.
    Modulation of the expression of M150 on macrophages by Th1/Th2 cytokines and co-stimulatory molecules CD40, B7-1, B7-2 and ICAM-1. Clin. Exp. Immunol., 134,232-7, 2003.


  • Agrewala, J.N.; Suvas, S.; Singh, V. and Vohra, H.
    Delivery of antigen in allogeneic cells preferentially generates CD4+ Th1 cells. Clin. Exp. Immunol., 134, 13-22, 2003.


  • Mukherjee, S.; Shukla, A. & Guptasarma, P.
    Single-step purification to homogeneity of the SlyD peptidyl prolyl isomerase (PPI) from Escherichia coli cytoplasmic extracts. Biotech. Appl. Biochem., 37, 183-186, 2003.


  • Kundu, B.; Shukla, A. & Guptasarma, P.
    Peptide scanning-based identification of regions of gamma-II crystallin involved in thermal aggregation: Evidence of the involvement of structurally-analogous helix-containing loops from the two double Greek key domains of the molecule. Arch. Biochem. Biophys., 410, 69-75, 2003.


  • Kumar, C.; Sharma, R. and Bachhawat, A.K.
    Utilization of glutathione as an exogenous sulphur source is independent of
    g-glutamyl transpeptidase in the yeast Saccharomyces cerevisiae: Evidence for an alternative gluathione degradation pathway. FEMS Microbiology Letters, 219, -187-94, 2003.


  • Sharma, K.G.; Kaur, R. and Bachhawat, A.K.
    The glutathione-mediated detoxification pathway in yeast: An analysis using the red pigment that accumulates in certain adenine biosynthetic mutants of yeast reveals the involvement of novel genes. Archives Microbiol., 180, 108-17, 2003.


  • Ganguly, D.; Srikanth, C.V.; Kumar, C.; Vats, P. and Bachhawat, A.K.
    Why is glutathione (a tripeptide) synthesized by specific enzymes while TSH releasing hormome (TRH or thyroliberin), also a tripeptide, is produced as part of a prohormone protein? [Is there an answer?]. IUBMB Life, 55, 553-554, 2003.


  • Pruthi, V. & Cameotra, S.S.
    Effect of nutrients on optimal production of biosurfactant by Pseudomonas putida- a Gujarat oil field isolate. J. Surfactants Detergents, 6, 6568, 2003.


  • Radha Kishan, K.V.
    SH3-fold proteins are structurally conserved and functionally divergent. Current Protein Peptide Science, 4, 195-206, 2003.


  • Raghava, G.P.S.; Searle, S.M.; Audley, P.C.; Barber, J.D. and Barton G.J.
    OXBench: Evaluation of protein multiple sequence alignment. BMC Bioinformatics, 4, 2003.


  • Patnaik, P.R.
    An integrated hybrid neural system for noise filtering, simulation and control of a fed-batch recombinant fermentation. Biochem Engng J, 15, 165-175, 2003.


  • Patnaik, P.R.
    Effect of fluid dispersion on cybernetic control of microbial growth on substitutable substrates. Bioproc. Biosyst. Engng., 25, 315-321, 2003.


  • Bhasin, M. and Raghava, G.P.S.
    Prediction of promiscuous and high affinity mutated MHC binders. Hybrid. Hybridomics, 22, 229-234, 2003.


  • Singh, Swaranjit and Bollag, Jean-Marc
    Biosurfactant enhanced bioremediation of polyaromatic hydrocarbons. CRC Rev. Environ. Sc. Technol., 30, 111-126, 2003.


  • Swaranjit Singh
    Synthesis of surface active compounds by microorganisms. In Biotechnology of microbes and sustainable utilization, ed. R.C. Rajak, Scientific Publishers, chapter 30, 208-215, 2003.


  • Raghava, G.P.S.; Solanki, R.J.; Soni, V. and Agrawal, P.
    Fingerprinting methods for phylogenetic classification and indentification of microorganisms based on variation in 16S rRNA gene sequences. Page 373-82, Chapter 44, BioComputing: Computer Tools for Biologists. Edited By Staurt M. Brown, 2003.


  • C Raman Suri
    Immunosensors for pesticide monitoring. Advances in Biosensors (Elsevier publication), eds. A.P.F. Turner and B.D. Malhotra, vol. 5, 161-178, 2003.


PUBLICATIONS DURING 2002


  • Banerjee, P.P.; Vinay, D.S.; Mathew, A.; Raje, M.; Parekh, V.; Prasad, D.V.; Kumar, A.; Mitra, D. and Mishra, G.C.
    Evidence that glycoprotein 96 (b2), a stress protein, functions as a th2-specific costimulatory molecule. J. Immunol., 169, 3507-3518, 2002.


  • Majumdar, Sekhar; Lamothe Betty and Aggarwal, B.B.
    Thalidomide suppresses NF-kB activation induced by TNF and H2O2, but not that activated by ceramide, lipopolysaccharides, or phorbol ester. J. Immunol., 168, 2644-2651, 2002.


  • Ashikawa, K.; Majumdar, Sekhar; Banerjee, S; Bharti, A.C.; Shishodia, S. and Aggarwal, B.B.
    Piceatannol Inhibits TNF-induced NF-kB activation and NF-kB-Mediated gene expression through suppression of IkB
    a kinase and p65 phosphorylation. J. Immunol., 169, 6490-6497, 2002.


  • Dhar, Jayeeta; Pande, Abhay, H.; Sundram, Vasudha; Nanda, J.S.; Mande, S.C. and Sahni, G.
    Involvement of a nine-residue loop of streptokinase in the generation of macromolecular substrate-specificity by the activator complex through interaction with substrate kringle domains. J. Biol. Chem., 277, 13257-13267, 2002.


  • Pathania, Ranjana; Navani, N.K.; Rajamohan, G. and Dikshit, K.L.
    Mycobacterium tuberculosis hemoglobin HbO associates with membranes and stimulates cellular respiration of recombinant E. coli. J. Biol. Chem., 277, 15293-15302, 2002.


  • Suvas, S.; Singh, V.; Sahdev, S.; Vohra, H. and Agrewala, J.N.
    Distinct roles of CD80 & CD86 in the regulation of the activation of B cell & B cell lymphoma. J. Biol. Chem., 277, 7766-7775, 2002.


  • Patnaik, P.R.
    Can imperfections help to improve the performances of bioreactors?. Trends Biotechnol., 20,
    135-137, 2002.


  • Samanta, S.K.; Singh, O.V. and Jain, R.K.
    Polycyclic aromatic hydrocarbons: Environmental pollution and bioremediation. Trends Biotechnol., 20, 243-248, 2002.


  • Pathania, R.; Navani, N.K.; Gardner, A.M.; Gardner, P.R. and Dikshit, K.L.
    Nitric oxide scavenging and detoxification by the Mycobacterium tuberculosis hemoglobin, HbN in Escherichia coli. Mol. Microbiol., 45, 1303-1314, 2002.


  • Sarkar, Dibyendu; Azaro, M.A.; Aihara, H.; Papagiannis, C.V.; Tirumalai, R.; Nunes-Duby, S.E.; Johnson, RC.; Ellenberger, T. and Landy, Arthur
    Differential affinity and cooperativity functions of the amino-terminal 70 residues of g-integrase. J. Mol. BioI., 324, 775-789, 2002.


  • Issac, B.; Singh, H.; Kaur, H. and Raghava, G.P.S.
    Locating probable genes using fourier transform. Bioinformatics, 18, 196-197, 2002.


  • Kaur, H. and Raghava, G.P.S.
    BetaTPred: Prediction of beta-turns in a protein using statistical algorithms. Bioinformatics, 18, 498-499, 2002.


  • Kaur, H. and Raghava, G. P. S.
    An Evaluation of b-Turn Prediction Methods. Bioinformatics, 18, 1508-14,2002.


  • Rajamohan, G.; Dahiya, M.; Mande, S.C. and Dikshit, K.L.
    Function of 90-loop (Thr90-Glu100) region of staphylokinase in plasminogen activation probed through site-directed mutagenesis and loop deletion. Biochem J., 365, 379-389, 2002.


  • Thungapathra, M.; Amita; Sinha, K.K.; Chaudhuri, S.R.; Garg, Pallavi; Ramamurthy, T.; Nair, G.B. and Ghosh, Amit
    Occurrence of antibiotic resistance gene cassettes aac(6Â’)-Ib, drfA5, dfrA12 and ereA2 in class I integrons in non-01, non-0139 vibrio cholerae in India. Antimicrob. Agents Chemother., 46, 2948-2955, 2002.


  • Asakura, T.; Sugino, R.; Yao, J.; Takashima, H. and Kishore, R.
    Comparative structure analysis of tyrosine and valine residues in unprocessed silk fibroin (Silk I) and in the processed silk fiber (Silk II) from Bombyx mori using solid-state 13C, 15N and 2H NMR. Biochemistry, 41, 4415-4424, 2002.


  • Johnson, G.R.; Jain, R.K. and Spain, J.C.
    Origins of the 2,4-dinitrotoluene pathway. J. Bacteriol., 184, 4219-4232, 2002. Ramandeep; Pathania, Ranjana; Sharma, V.; Mande, S.C. and Dikshit, K.L.
    Chimeric Vitreoscilla hemoglobin (VHb) carrying flavoreductase domain relieves nitrosative stress in E. coli: New insight into the functional role of VHb. Appl. Environ. Microb., 68, 152-160, 2002.


  • Mehta, N.; Vater, Joachim and Cameotra, Swaranjit Singh.
    Matrix assisted laser desorption / ionization mass spectrometry of lipopeptide biosurfactants in whole cells and culture filtrates of Bacillus subtilis C-1 isolated from petroleum sludge. Appl. Environ. Microb., 68, 6210-6219, 2002.


  • Pandey, G. and Jain, R.K.
    Bacterial chemotaxis toward environmental pollutants: Role in bioremediation. Appl. Environ. Microb., 68, 5789-5795, 2002.


  • Kundu, B.; Shukla, A. and Guptasarma, P.
    Manipulation of unfolding-induced protein aggregation by peptides selected for aggregate-binding ability through phage display library screening. Biochem. Biophys. Res. Commun., 291, 903-907, 2002.


  • Kundu, B. and Guptasarma, P.
    Use of a hydrophobic dye to indirectly probe the structural organization & conformational plasticity of molecules in amorphous aggregates of carbonic anhydrase. Biochem. Biophys. Res. Commun., 293, 572-577, 2002.


  • Swartz, M.J.; Batra, S.K.; Varshney, G.C., Hollingsworth, M.A.; Yeo, C.J.; Cameron, J.L.; Wilentz, R.E.; Hruban, R.H. and Argani, Pedram
    MUC4 expression increases progressively in pancreatic intraepithelial neoplasia (PanIN). Am. J. Clinical Pathology, 117, 791-796, 2002.


  • Chaba, Rachna; Raje, M. and Chakraborti, P.K.
    Evidence that a eukaryotic-type serine / threonine protein kinase from Mycobacterium tuberculosis regulates morphological changes associated with cell division. Eur. J. Biochem., 269, 1078-1085, 2002.


  • Leelavathi, Sadhu; Gupta, Naveen; Maiti, Sankar; Ghosh, Amit and Reddy, Vanga Siva.
    Overproduction of an alkali- and thermo-stable xylanase in tobacco chloroplasts and efficient recovery of the enzyme. Mol. Breeding, 2002.


  • Khorrami, A.K.; Choudhury, A.; Andrianifahanana, M.; Varshney, G.C.; Bhattacharyya, S.N.; Hollingsworth, M.A.; Kaufman, Bernard and Batra, S.K.
    Purification and characterization of a human pancreatic adenocarcinoma mucin. J. Biochem., 131, 21-29, 2002.


  • Sahoo, D.K. and Agarwal, G.P.
    Effect of oxygen transfer on glycerol biosynthesis by an osmophilic yeast Candida magnoliae I2B. Biotechnol. Bioeng., 78, 545-555, 2002.


  • Ramandeep; Dikshit, K.L. and Raje, M.
    Optimization of immunogold labeling TEM: An ELISA-based method for evaluation of blocking agents for quantitative detection of antigen. J. Histochem. Cytochem., 50, 863-873, 2002.


  • Suri, C.R.; Raje, M. and Varshney, G.C.
    Immunosensor for pesticide analysis: Antibody production and sensor development. Crit. Reviews Biotechnol., 22, 15-32, 2002.


  • Ashish and Kishore, R.
    Folded conformation of an immunostimulating tetrapeptide rigin: High temperature molecular dynamics simulation study. Bioorgan. Med. Chem., 10, 4083-4090, 2002.


  • Makkar, R.S. and Cameotra, Swaranjit Singh.
    An update on the use of unconventional substrates for biosurfactant production and their new applications. Appl. Microbiol. Biotechnol., 58, 428-434, 2002.


  • Mukhopadhyay, U.K. and Sahni, G.
    High level production and purification of biologically active recombinant buffalo and goat growth hormones. J. Biotechnol., 97, 199-212, 2002.


  • Bisht, H.; Chugh, D.; Raje, M.; Swaminathan, S. and Khanna, N.
    Recombinant dengue virus type 2 envelope / hepatitis B surface antigen hybrid protein expressed in Pichia Pastoris can function as a bivalent immunogen. J. Biotechnol., 99, 97, 2002.


  • Kaur, R.; Dikshit, K.L. and Raje, M.
    Pre-screening for antigen detectability in cells: A TEM based solid phase digital immunogold detection method utilizing ultra low volumes of reagents. J. Microsc., 208, 100-107, 2002.


  • Saha, Satish; Raje, M. and Suri, C.R.
    Sandwich microgravimetric immunoassay: Sensitive and specific detection of low molecular weight analytes using piezoelectric quartz crystal. Biotechnol. Lett., 24, 711-716, 2002.


  • Patnaik, P.R.
    Condition number analysis for a preliminary evaluation of recombinant fermentation performance. Biotechnol. Lett., 24, 115-119, 2002.


  • Vats, P. and Banerjee, U.C.
    Studies on the production of phytase by a newly isolated strain of Aspergillus niger var teigham obtained from rotten wood-logs. Process. Biochem., 38, 211-217, 2002.


  • Mukhopadhyay, U.K. and Sahni, G.
    Cloning, characterization and expression studies in E. coli of growth hormone cDNAs from Indian Zebu cattle, Reverine Buffalo and Beetal Goat. Anim. Biotechnol., 13, 179-193, 2002.


  • Patnaik, P.R.
    Comparative evaluation of batch and fed-batch bioreactors for GAPDH production by recombinant Escherichia coli with distributed plasmid copy number. Chemical Eng. J., 87, 357-366, 2002.


  • Mittal, J.; Dogra, N.; Das, R. and Majumdar, S.
    vitro cts cAMP-elevating agents and glucocorticoid either alone or in combination on the production of nitric oxide, interleukin-12 and interleukin-10 in IFN-
    g- and LPS-activated mouse peritoneal macrophages. Folia Microbiol., 47, 709-716, 2002.


  • Patnaik, P.R.
    Temperature optima of enzymes: Sifting fact from fiction. Enzyme Microb. Technol., 31, 198-200, 2002.


  • Patnaik, P.R.
    Steady state performance and sensitivity of a continuous recombinant fermentation with plasmid copy number multiplicity. Indian J. Biotechnol. 1, 263-269, 2002.


  • Batra, N.; Singh, J.; Banerjee, U.C.; Patnaik, P.R. and Sobti, R.C.
    Thermostable
    b -galactosidase from Bacillus coagulans RCS3: Production and characterisation. Biotechnol. Appl. Biochem., 36, 1-6, 2002.


  • Patnaik, P.R.
    Neural optimization of fed-batch streptokinase fermentation in a nonideal bioreactor. Can. J. Chem. Engng., 80, 920, 2002.


  • Kumar, Naresh
    Working through laboratory/industry linkages: Creating an enabling mechanism in CSIR India. Phys. Scripta, T97, 67-72, 2002.


  • Agrawal, V. and Radhakishan, K.V.
    Promiscuous binding nature of SH3 domains to their target proteins. Protein Peptide Lett., 9, 185-193, 2002.


  • Maiti, S.; Luthra-Guptasarma, M. and Guptasarma, P.
    Phenomenological perspectives on the folding of beta / alpha barrel domains through the modular formation and assembly of smaller structural elements. IUBMB Life, 54, 213-221, 2002.


  • Mukhopadhyay, U.K. and Sahni, G.
    An insight into the possible mechanism of working of two-cistronic gene expression systems and rational designing of newer systems. J. Biosci., 27, 219-231, 2002.


  • Rao, G.S.; Bachhawat, A.K. and Gupta, C.M. Two-hybrid-based analysis of protein-protein interactions of the yeast multidrug resistance protein, Pdr5p. Funct. Integ. Genomics, 1, 357-366, 2002.


  • Goyal, N.; Jain, S.C. and Banerjee, U.C.
    Comparative studies on microbial adsorption of heavy metals. Adv. Environ. Res., 2002.


  • Sharma, K.G.; Mason, D.L.; Liu, G.; Rea, P.A.; Bachhawat, A.K. and Michaelis, S.
    Localization, regulation and substrate transport properties of BpT1p, a Saccharomyces cerevisiae MRP-type ABC transporter. Eukaryotic Cell, 1, 391-400, 2002.


  • Makkar, R.S. and Cameotra, Swaranjit Singh.
    Effects of various nutritional supplements on biosurfactant production by a strain of Bacillus subtilis at 45 ?C. J. Surfactants Detergents, 5, 11-17, 2002.


  • Budhiraja, R.; Basu, A. and Jain, R.K.
    Microbial diversity: Significance, conservation and application. Science Lett., 25, 189-201, 2002.


  • Agrawal, V.; Sharma, R.; Vohra, R.M. and Radha Kishan, K.V.
    Crystallization and preliminary X-ray diffraction analysis of a thermostable D-hydantoinase from the mesophilic Bacillus sp. AR9. Acta Cryst., 58, 2002.


  • Issac, B. and Raghava, G.P.S.
    GWFASTA: A server for FASTA search in Eukaryotic and Microbial genomes. Biotechniques, 33, 548-56, 2002.


  • Singh, H. and Raghava, G.P.S.
    Detection of Orientation of MHC Class II Binding Peptides Using Bioinformatics Tools. Biotech Software Internet Report, 3, 146, 2002.


  • Pandey, G.; Chauhan, A.; Samanta, S.K. and Jain, R.K.
    Chemotaxis of a Ralstonia sp. SJ 98 toward co-metabolizable nitroaromatic compounds. Biochem. Biophys. Res. Commun., 299, 404-409, 2002.


  • Asakura, T.; Kato, H.; Yao, J.; Kishore, R. and Shirai, M.
    Design, expression and structural characterization of hybrid proteins of Samia cynthia ricini and Bombyx mori silk fibroin. Polymer J., 34, 936-943, 2002.


  • Swain, S.L.; Agrewala, J.N.; Brown, D.M. and Roman, E.
    Regulation of memory CD4 T cells: Generation, localization & persistence. Adv. Exp. Med. BioI., 512, 113-20, 2002.


  • Sharma, R; Soni, S.K.; Vohra, R.M.; Gupta, L.K. and Gupta, J.K.
    Purification and characterization of a thermostable alkaline lipase from a new thermophilic Bacillus sp. RSJ-1. Process Biochem., 37, 1075-1084,2002.


  • Pandey, K.K.; Mayilraj, S. and Chakrabarti, T.
    Pseudomonas indica so. nov., a novel butane utilizing species. Int. J. Syst. Evol. Microbiol., 52, 1559-1567, 2002.


  • Ananthapadmanaban, D.
    Non-deposit of voucher cultures. Mycological Res., 106, 641, 2002.


  • Batra, N.; Singh, J.; Banerjee, U.C.; Patnaik, P.R. & Sobti, R.C.
    Thermostable
    b -galactosidase from Bacillus coagulans RCS3: Production and characterisation. Biotechnol. Appl. Biochem., 36, 1-6, 2002.


  • Sharma, R.; Soni, S.K.; Vohra, R.M.; Jolly, R.S.; Gupta, L.K. and Gupta, J.K.
    Production of an extracellular alkaline lipase from a new Bacillus sp. RSJ1 and its application in ester hydrolysis. Indian J. Microbiol., 42, 49-54. 2002.


  • Patnaik, P.R.
    Exploiting the nonideal features of bioreactors for more efficient resource utilization. Utilization of Bioresources, Allied Pub., New Delhi, 297, 2002.




PUBLICATIONS DURING 2001


  • Khatri N.,Nichani A.K.,Sharma R.D.,Khatri M. and Malhotra D.V.
    Effect of vaccination in the field with the Theileria annulata (Hisar) cell culture vaccine on young calves born during the winter season Veterinary Research Communications, 25(3), 179-88, 2001.


  • Singh S.,Nichani A.K.,Khatri N.,Manuja A.,Sharma R.D. and Malhotra D.V.
    Impact of field vaccination with a Theileria annulata schizont cell culture vaccine on the epidemiology of tropical theileriosis. Veterinary Parasitology, 101(2), 91-100, 2001.


  • Mazumdar, Sekhar and Aggarwal, B.B.
    Methotrexate suppresses NF-
    a kB activation through inhibition of IkB a phosphorylation and degradation. J. Immunol., 167, 2911-2920, 2001.


  • Sharma, V.M.; Chopra, R. and Ganesan, K.
    Quantitative target display: A method to screen yeast mutants conferring quantitative phenotypes by ‘mutant-DNA fingerprints’. Nucleic Acids Res., 29, 86-6, 2001.


  • Mukerjee, K.; Seetharaman, P.; Raje, M. and Mukhopadhyay, A.
    SopE acts as a Rab5 specific nucleotide exchange factor and recruits non-prenylated Rab5 on Salmonella containing phagosomes to promote fusion with early endosome. J. Biol. Chem., 276, 23607-23615, 2001.


  • Ramandeep; Hwang, Kwang-Woo; Raje, M.; Kim, Kyung-Jin, Stark, C. Benjamin; Dikshit, Kanak, L. and Webster, Dale A.
    Vitreoscilla Hemoglobin: Intracellular localization and binding to membranes. J. Biol. Chem., 276, 24781-24789, 2001.


  • Sarin, Jyoti; Aggarwal, Sita; Chaba, Rachna; Varshney, G.C. and Chakraborti, P. K.
    B subunit of phosphate specific transporter from Mycobacterium tuberculosis is a thermostable ATPase. J. Biol. Chem., 276, 44590-44597, 2001.


  • Ahmed, Shakil; Saini, Sharanjot; Arora, Sumit and Singh, Jagmohan
    Chromodomain protein Swi6-mediated role of DNA polymerase ? in establishment of silencing in fission yeast. J. Biol. Chem., 276, 47814-47821, 2001.


  • Gutgsell, N.S.; Campo, M.D.; Chaudhuri, Saumya Ray and Ofengand, J.
    A second function for pseudouridine synthases: A point mutant of RluD unable to form pseudouridines 1911, 1915 and 1917 in Escherichia coli 23S ribosomal RNA restores normal growth to an RluD-minus strain. RNA, 7, 990-998, 2001.


  • Radha Kishan, K.V.; Mewcomer, M.E.; Rhodes, T.H. and Guilliot, S.D.
    Effect of pH and salt bridges on structural assembly: Molecular structures of monomer and intertwined dimer of eps8 sh3 domain. Protein Sci., 10, 1046-1055, 2001.


  • Singh, H. and Raghava, G.P.S.
    ProPred: Prediction of HLA-DR binding sites. Bioinformatics, 17, 1236-1237, 2001.


  • Ish Kumar and Jolly, R.S.
    A thioesterase for chemoselective hydrolysis of S-acyl sulfanylalkanoates. Org. Lett., 3, 607-610, 2001.


  • Chauhan, R. and Mande, S.C.
    Characterisation of Mycobacterium tuberculosis H37Rv AhpC points to the importance of ionic interactions in oligomerization and activity. Biochem. J., 354, 209-215, 2001.


  • Wittel, U.; Goel, A.; Varshney, G.C. and Batra, S.K.
    Mucin antibodies- New tools in diagnosis and therapy of cancer. Frontiers Bioscience, 6, 1296-1310, 2001.


  • Jain, Maneesh; Karan, D.; Batra, S.K. and Varshney, G.C.
    Mucins in protozoan parasites. Frontiers Bioscience, 6, 1276-1283, 2001.


  • Bansal, P.K.; Sharma, P. and Mondal, Alok.
    A minisatellite sequence in the upstream region of DURA3 gene from halotolerant yeast Debaryomyces hansenii. Yeast, 18, 1301-1307, 2001.


  • Bansal, P.K.; Sharma, P. and Mondal, Alok.
    A PBS2 homologue from Debaryomyces hansenii shows differential effect on calcoflour and polymyxin B sensitivity in Saccharomyces cerevisiae. Yeast, 18, 1207-1216, 2001.


  • Padda, R.S.; Pandey, K.K.; Kaul, S.; Nair, V.D.; Jain, R.K.; Basu, S.K. and Chakrabarti, T.
    A novel gene encoding a 54 kDa polypeptide is essential for butane utilization by Pseudomonas sp. IMT37. Microbiol., 147, 2479-2491, 2001.


  • Ramandeep; Dikshit, K.L and Raje, M.
    Optimization of immunogold labelling TEM. An ELISA based method for convenient simulation of processing conditions for quantitative detection. J. Histochem. Cytochem., 49, 355-368, 2001.


  • Thakur, A.K. and Kishore, R.
    Crystallographic characterisation of novel ?-turn like folds in a model peptide: Stabilisation by main-chain to side-chain interactions. Tetrahedron Lett., 42, 4691-4692, 2001.


  • Raghavendra, V.; Singh, V.; Shaji, A.V.; Vohra, H.; Kulkarni, S.K. and Agrewala, J.N.
    Melatonin provides signal 3 to unprimed CD4+ T cells but failed to stimulate LPS primed B cell. Clin. Exp. Immunol., 124, 414-422, 2001.


  • Taneja, B. and Mande, S.C.
    Metal ions modulate the plastic nature of M. tuberculosis chaperonin-10. Prot. Eng., 14, 391-395, 2001.


  • Patnaik, P.R.
    Microbial metabolism as an evolutionary response: The cybernetic approach to modelling. Crit. Reviews Biotechnol., 21, 155-175, 2001.


  • Raghavendra, V.; Singh, V.; Kulkarni, S.K. and Agrewala, J.N.
    Melatonin enhances Th2 mediated immune response: Lack of sensitivity to reversal by naltrexone or benzodiazepine receptor antagonists. Mol. Cell. Biochem., 221, 57-62, 2001.


  • Sareen, D.; Sharma, R. and Vohra, R.M.
    Chaperone-assisted overexpression of an active D-carbamoylase from Agrobacterium tumefaciens AM10. Prot. Expres. Puri., 23, 374-379, 2001.


  • Chakraborty, S.; Garg, P.; Ramamurthy, T.; Thungapathra, M.; Gautam, J.K.; Kumar, C.; Maiti, S.; Yamasaki, S.; Shimada, T.; Takeda, Y.; Ghosh, Amit and Nair, G.B.
    Comparison of antibiogram, virulence genes, ribotypes and DNA fingerprints of V. cholerae matching serogroups isolated from hospitalized diarrhoea cases and from the environment during 1997-98 in Calcutta, India. J. Med. Microbiol., 50, 879-888, 2001.


  • Samanta, S.K.; Bhushan, B. and Jain, R.K.
    Efficiency of naphthalene and salicylate degradation by a recombinant Pseudomonas putida mutant strains defective in glucose metabolism. Appl. Microbiol. Biotechnol., 55, 627-631, 2001.


  • Thakur, A.K. and Rishore, R.
    Influence of the hydrophobic interactions on the conformational adaptability of the
    b -Ala residue. J. Peptide Res. 57, 455-461, 2001.


  • Singh, J.; Vohra, R.M. and Sahoo, D.K.
    Purification & characterisation of two extracellular alkaline proteases from a newly isolated obligate alkalophilic Bacillus sphaericus. J. Indus. Microbiol. Biotechnol., 26, 387-393, 2001.


  • Patnaik, P.R.
    A sensitivity approach to manipulated variable selection for control of a continuous recombinant fermentation. Chem. Eng. Sci., 56, 3311-3314, 2001.


  • Sahoo, D.K. and Agarwal, G.P.
    An investigation on glycerol biosynthesis by an osmophilic yeast in a bioreactor. Process Biochem., 36, 839-846, 2001.


  • Patnaik, P.R.
    Investigation of induction effect on the steady state performance of a continuous fermentation for recombinant
    b -galactosidase. Process Biochem., 36, 1069-1074, 2001.


  • Patnaik, P.R.
    Further enhancement of fed-batch streptokinase yield in the presence of inflow noise by coupled neural networks. Process Biochem., 37, 145-157, 2001.


  • Patnaik, P.R.
    A simulation study of dynamic neural filtering and control of a fed-batch bioreactor under nonideal conditions. Chem. Eng. J., 84, 533-541, 2001.


  • Ahmed, S. and Singh, J.
    An imprinting function of DNA polymerase
    a in establishment of silencing in Schizosaccharomyces pombe. Curr. Sci., 80, 1337-1343, 2001.


  • Patnaik, P.R.
    Enhancement of protein activity in a recombinant fermentation by optimising fluid dispersion and initial plasmid copy number distribution. Biochem. Eng. J., 9, 111-118, 2001.


  • Patnaik, P.R.
    Hybrid neural simulation of a fed-batch bioreactor for a nonideal recombinant fermentation. Bioprocess Biosystems Eng., 24, 151-161, 2001.


  • Patnaik, P.R.
    Architectures for hybrid neural networks in their applications to biological reactors. Biotech. J. Intl., 6, 16-18, 2001.


  • Makkar, R.S. and Cameotra, Swaranjit Singh.
    Enhanced biosurfactant production by Bacillus subtilis at thermophilic conditions by foam fractionation. J. Surfactants Detergents, 4, 355-357, 2001.


  • Banat, I.M.; Makkar, R.S. and Cameotra, Swaranjit Singh.
    Potential commercial applications of microbial surfactants. Appl. Microbiol. Biotechnol., 53, 495-508, 2001.


  • Agrawal, V. and Radhakishan, K.V.
    Functional evolution of two subtly different (similar) folds. Biomedcentral Structural Biology, 2001.


  • Mittal, J.; Dogra, N.; Vohra, H. and Mazumdar, S.
    Effects of prostaglandin E2 and nitric oxide inhibitors on the expression of interleukin-10, interleukin-12 and MHC class-II molecules in Mycobacterium microti-infected and interferon-gamma treated mouse peritoneal macrophages. Folia Microbiol., 46, 259-64, 2001.


  • Owais, M.; Masood, A.K.; Agrewala, J.N.; Bisht, D. and Gupta, C.M.
    Use of liposomes as an immunopotentiating delivery system: In perspective of vaccine development. Scand. J. Immunol., 54, -32, 2001.


  • Raghava, G.P.S.
    PDSB: Public domain software in biology. Biotech Software and Internet Report, 2, 154-156, 2001.


  • Raghava, G.P.S. and Agrewala, J.N.
    A web based method for computing endpoint titer and concentration of antibody/antigen. Biotech Software and Internet Report, 2, 196-7, 2001.


  • Raghava, G.P.S.
    PDWSB: Public domain web servers in biology. Biotech Software and Internet Report, 2, 152-153, 2001.


  • Raghava, G.P.S.
    A web server for computing size of DNA/Protein fragment using graphical method. Biotech Software and Internet Report, 2, 198-200, 2001.


  • Raghava, G.P.S.
    A graphical web server for the analysis of protein sequences and alignment. Biotech Software and Internet Report, 2, 255-258, 2001 .


  • Ish, Kumar; Kavita, Manju and Jolly, R.S.
    A new biocatalyst for the preparation of enantiomerically pure 2-arylpropanoic acids. Tetrahedron: Asymmetry, 12, 1431-34. 2001.


  • Chauhan, A.; Samanta, S.K. and Jain, R.K.
    Degradation of nitrophenolic compounds by microorganisms. In: Environmental Pollution and Management of Wastewaters by Microbial Technique. (Ed. By G.R. Pathade and P.K. Goel), pp. 219-232, 2001, ABD Publishers, Jaipur, India.


PUBLICATIONS DURING 2000


  • Khatri N., Nichani A.K., Sharma R.D. and Khatri M.
    Suitability of gelatin for preservation of in vitro propagated Theileria annulata schizonts. Indian Veterinary Journal, 77, 479-482, 2000.


  • Mukerjee, Konark; Siddiqi, Shadab, A.; Hashim, Shehla; Raje, M.; Basu, S.K. and Mukhopadhyay, Amitabha
    Live Salmonella recruits NSF on phagosomal membrane & promotes fusion with early endosome, J. Cell Biol., 148, 741-753, 2000.


  • Bachhawat, N. and Mande, S.C.
    Complex evolution of the inositol-1-phosphate synthase among archaea and eubacteria. Trends Genet., 16, 111-113, 2000.


  • Hashim, Shehla; Mukherjee, Konark; Raje, Manoj; Basu, S.K. and Mukhopadhyay, A.
    Live Salmonella modulate expression of rab proteins to persist in a specialised compartment and escape transport to lysosomes. J. Biol. Chem., 275, 16281-16288, 2000.


  • Bourbouloux, Andree; Shahi, Puja; Chakladar, Abhijit; Delrot, Serge and Bachhawat, A.K.
    Hgt1p, a high affinity glutathione transporter from the yeast Saccharomyces cerevisaie, J. Biol. Chem., 275, 13259-13267, 2000.


  • Ho, Siew, C.; Chaudhuri, Subhra; Bachhawat, A.K. and Pillai, Shiv.
    Accelerated proteasomal degradation of membrane immunoglobulin heavy chains, Immunol., 164, -4719, 2000.


  • G, Rajamohan and Dikshit, K.L.
    Role of the N-terminal region of Staphylokinase (SAK): Evidence for the participation of the N-terminal region of SAK in the enzyme-substrate complex formation. S Lett., 474,-158, 2000.


  • Gupta, N.; Reddy, Vanga Shiva; Maiti, Sankar and Ghosh, Amit.
    Cloning, expression and sequence analysis of the gene encoding the alkali stable thermostable endoxylanase from the alkalophilic mesophilic Bacillus sp. NG-27. Appl. Environ. Microbiol., 66, 2631-2635, 2000.


  • Ashish; Grover, Arvinder and Kishore, R.
    Characterisation of a novel type VII beta-turn conformation for a bio-active tetrapeptide rigin: A synergy between theoretical and experimental results, Eur. J. Biochem., 267, 1455-1463, 2000.


  • Bhatt, Kamlesh; Banerjee, S.K. and Chakraborti, P.K.
    Evidence that phosphate specific transporter is amplified in a fluoroquinolone resistant Mycobacterium smegmatis. Eur. J. Biochem., 267, 4028-4032, 2000.


  • Mande, S.C. and Sobhia Elizabeth
    Structural characterization of the protein-denaturant interactions: Crystal structures of hen egg white lysozyme in complex with guanidinium chloride and DMSO. Prot. Eng., 13, 133-141, 2000.


  • Chauhan, Ashvini and Jain, R.K.
    Degradation of o-nitrobenzoate via anthranilic acid (o-aminobenzoate) by Arthrobacter protopharmiae: A plasmid encoded new pathway. Biochem. Biophys. Res. Commun., 267, 236-244, 2000.


  • Chauhan, Ashvini; Chakraborti, A.K. and Jain, R.K.
    Plasmid-encoded degradation of p-nitrophenol and 4-nitrocatechol by Arthrobacter protopharmiae. Biochem. Biophys. Res. Commun., 270, 733-740, 2000.


  • Samanta, S.K.; Bhushan, B.; Chauhan, A. and Jain, R.K.
    Chemotaxis of a Ralstonia sp. SJ98 towards different nitroaromatic compounds (NACs) and their degradation. Biochem. Biophys. Res. Commun., 269, 117-123, 2000.


  • Bhushan, B.; Chauhan, A.; Samanta, S.K. and Jain, R.K.
    Kinetics of biodegradation of p-nitrophenol by different bacteria. Biochem. Biophys. Res. Commun., 274, 626-630, 2000.


  • Bhushan, B.; Samanta, S.K.; Chauhan, A.; Chakraborti, A.K. and Jain, R.K.
    Chemotaxis and biodegradation of 3-methyl-4-nitrophenol by Roastonia sp. SJ98. Biochem. Biophys. Res. Commun., 275, 129-133, 2000.


  • Thakur, A.K.; Venugopalan, P. and Kishore, R.
    Collateral existence of a folded and an extended conformations of the beta-Ala moiety in a model peptide. Biochem. Biophys. Res. Commun., 273, 492-498, 2000.


  • Banerjee, S.K.; Bhatt, K.; Misra, P. and Chakraborti, P.K.
    Involvement of a natural transport system in the process of efflux mediated drug resistance in Mycobacterium smegmatis. Mol. Gen. Genet., 262, 949-956, 2000.


  • Johnson, G.R.; Jain, R.K. and Spain, J.C.
    Properties of the trihydroxytolune oxygenase from Burkholderia cepacia R34: An extradiol dioxygenase from the 2,4-dinitrotolune pathway. Arch. Microbiol., 173, 86-90, 2000.


  • Bansal, P.K. and Alok, Mondal
    Isolation & sequence of the >HOG1 homologue from Debaromyces hansenii by complementation of hog1 Δ strain of Saccharomyces cerevisiae. Yeast, 16, 81-88, 2000.


  • Ingavale, S.S.; Sharma, K.G. and Bachhawat, A.K.
    Construction of novel vectors for use in the fission yeast Schizosaccharomyces pombe. Yeast, 16, 1345-1350, 2000.


  • Thakur, A.K. and Kishore, R.
    Stabilization of novel
    b -turn like motif by non-conventional intramolecular hydrogen bonding interactions in a model peptide incorporating B-alanine. Biopolymers, 53, 447-454, 2000.


  • Patnaik, P.R.
    Penicillin fermentation: Mechanisms & models for industrial-scale bioreactors. Crit. Rev. Biotechnol., 20, 1-15, 2000.


  • Raghavendra, V.; Agrewala, J.N. and Kulkarni, S.K.
    Melatonin reversal of lipopolysaccharide-induced thermal behavioral hyperalgesia in mice. Eur. J. Pharmacol., 395, 15-21, 2000.


  • Sharma, K.G.; Sharma, V.; Bourbouloux, A.; Delrot, S. and Bachhawat, A.K.
    Glutathione depletion leads to a delayed growth stasis in Saccharomyces cerevisiae: A partially overlapping role played by thioredoxin. Current Genetics, 38, 71-77, 2000.


  • Raghava, G.P.S.; Solanki, R.J.; Soni, V. and Agrawal, P.
    A fingerprinting method for phylogenetic classification & identification of microorganisms based on variation in 16S rRNA gene sequences. Biotechniques, 29, 108-116, 2000.


  • Mande, S.S.; Gupta, N.; Ghosh, A. and Mande, S.C.
    Homology modelling of a novel xylanase: Molecular basis of high thermostability and alkaline stability. J. Biomol. Struct. Dyn., 18, 137-144, 2000.


  • Banat, I.M.; Makkar, R.S. and Cameotra, S.S.
    Potential commercial application of microbial surfactants. Appl. Microbiol. Biotechnol., 53, 495-508, 2000.


  • Patnaik, P.R.
    Are microbes intelligent beings? An assessment of cybernetic modelling. Biotechnol. Adv., 18, 267-288, 2000.


  • Puri, M. and Banerjee, U.C.
    Production, purification and characterization of debittering enzyme: naringinase. Biotechnol. Adv., 18, 207-217, 2000.


  • Patel, M.; Stark, B.C.; Hwang, K.; Dikshit, K.L. and Webster, D.A.
    Cloning and expression of Vitreoscilla hemoglobin gene in Burkholderia sp. Strain DNT for enhancement of 2,4-Dinitrotoluene degradation. Biotechnol. Prog., 16, 26-30, 2000.


  • Pratap, J.; Rajamohan, G. and Dikshit, K.L.
    Characterization of glycosylated streptokinase secreted from Pichia pastoris: Enhanced resistance of SK to proteolysis by glycosylation. Appl. Microbiol. Biotechnol., 53, 468, 2000.


  • Karmakar, B.; Vohra, R.M.; Nandanwar, H.S.; Sharma, P.; Gupta, K.G. and Sobti, R.C.
    Rapid degradation of ferulic acid via 4-vinylguiacol and vanillin by a newly isolated strain of Bacillus coagulans. J. Biotechnol., 80, 195-202, 2000.


  • Sareen, D.; Sharma, R.; Nandanwar, H.S. and Vohra, R.M.
    Two step purification of D(-)-specific carbamoxylase from Agrobacterium tumefaciens AM10. Protein Express. Purif., 21, 170-175, 2000.


  • Naresh, A. and Singh, J.
    Identification of four genes involved in suppression of the pre-mRNA splicing defect in the sng1-1/rhp6- mutant of fission yeast J. Genet., 79, 83-90, 2000.


  • Patnaik, P.R.
    An evaluation of models for the effect of plasmid copy number on bacterial growth rate. Biotechnol. Lett., 22, 1719-1725, 2000.


  • Patnaik, P.R.
    Principal component analysis for minimal model identification of a noise-affected fermentation: Application to streptokinase. Biotechnol. Tech., 22, 393-397, 2000.


  • Mazumdar, S.; Gupta, R. and Dogra, N.
    Interferon-
    g - and lipopolysaccharide-induced tumor necrosis factor- a is required for nitric oxide production: Tumor necrosis factor- a and nitric oxide are independently involved in the killing of Mycobacterium microti in interferon- g and lipopolysaccharide-treated J774A.1 cells. Folia Microbiol., 45, 457-463, 2000.


  • Patnaik, P.R.
    Fractal measures of fluid mixing and filtering of inflow noise in a biological reactor. React. Kinet. Catal. Lett., 71, 301-306, 2000.


  • Patnaik, P.R.
    Dynamic sensing of intra-cellular variables in an imperfectly mixed bioreactor by a recurrent neural network. Ind. J. Chem. Technol., 7, 318-325, 2000.


  • Thakur, A.K.; Venugopalan, P. and Kishore, R.
    Entrapping unusual folding characteristics of the B-Ala residues in a model peptide: Boc-BAla-Aib-BAla-NHCH3. J. Peptide Res., 56, 55-58, 2000.


  • Thakur, A.K. and Rishore, R.
    Influence of the hydrophobic interactions on the conformational adaptability of the
    b -Ala residue. J. Peptide Res. 57, 1-8, 2000.


  • Chakraborti, S.; Sani, R.K.; Banerjee, U.C. and Sobti, R.C.
    Production and partial characterization of a novel
    b -galactosidase from Bacillus sp. J. Indust. Microbiol. Biotechnol., 24, 58-63, 2000.


  • Mazumdar, S.; Kaur, H.; Vohra, H. and Varshney, G.C.
    Membrane surface of Mycobacterium microti-infected macrophages antigenically differs from that of uninfected macrophages. FEMS Immunol. Med. Microbiol., 28, 71-77, 2000.


  • Chauhan, A.; Samanta, S.K. and Jain, R.K.
    Degradation of 4-nitrocatechol by Burkholderia capacia: A plasmid encoded novel pathway, J. Appl. Microbiology, 88, 764-772, 2000.


  • Samanta, S.K. and Jain, R.K.
    Evidence for plasmid-mediated chemotaxis of Pseudomonas putida towards naphthalene and salicylate, Can. J. Microbiol., 46, 1-6, 2000.


  • Bhushan, B.; Samanta, S.K. and Jain, R.K.
    Indigo production by naphthalene degrading bacteria. Lett. Appl. Microbiol., 31, 5-9, 2000.


  • Patnaik, P.R.
    On the improvement of bacterial growth on complementary substrates by partial segregration in the broth. J. Chem. Technol. Biotechnol., 75, 229-236, 2000.


  • Patnaik, P.R.
    Principal component analysis for minimal model identification of a noise-affected fermentation: Application to streptokinase. Biotechnol. Lett., 22, 393-397, 2000.


  • Patnaik, P.R.
    Plasmid stability analysis in a non-homogeneous bioreactor for a recombinant fed-batch fermentation. Can. J. Chem. Eng., 77, 602-607, 2000.


  • Patnaik, P.R.
    Optimizing initial plasmid copy number distribution for improved protein activity in a recombinant fermentation. Biochem. Engng. J., 5, 101-107, 2000.


  • Raghava, G.P.S.
    Fingerprinting methods for phylogenetic classification and indentification of microorganisms based on variation in 16S rRNA gene sequences. Biotechniques, 29, 108-115, 2001.


  • Pruti, Vikas and Swaranjit Singh
    Novel sucrose lipid produced by Serratia marcescens and its application in enhanced oil recovery. J. Surfactants Detergents, 3, 533-37, 2000.


  • Agrawal, Pushpa.
    Fingerprinting method for phylogenetic classification and identification of microorganisms based on variation in 16S rRNA gene sequences (Biotechniques, 29, 108-116, 2000). In: 'BioComputing' to be published as a volume in BioFocus Update Series.


  • Ashish and Kishore, R.
    Further support for the conformation preferences of a type VII
    b -turn structure in bioactive tetrapeptides: tuftsin and rignin. Proceedings of the 6th Chinese Peptide Symposium 2000.


  • Cameotra, Swaranjit Singh.
    Microbial culture collections: Their activities and importance. In Microbes: Agriculture, Industry & Environment, pp. 261-269, 2000.




PUBLICATIONS DURING 1999




  • Sengupta, Shantanu; Tripathi, Jalaj; Tandon, Ruchi; Raje, Manoj; Roy, R.P.; Basu, S.K. and Mukhopadhyay, A.
    Hemoglobin endocytosis in Leishmania is mediated through a 46-KDa protein located in the flagellar pocket. J. Biol. Chem., 274,, 2758-2765, 1999.


  • Rana, Seema; Bisht, Deepa and Chakraborti, P.K.
    Synergistic activation of yeast expressed rat androgen receptor by modulators of protein kinase-A. J. Mol. Biol., 286, 669-681, 1999.


  • Bachhawat, N. and Mande, S.C.
    Identification of the INO1 gene of M. tuberculosis H37Rv reveals a novel class of inositol-1-phosphate synthase enzyme. J. Mol. Biol., 291, 531-536, 1999.


  • Agrewala, J.N. and Wilkinson, R.J.
    Influence of HLA-DR on the phenotype of CD4+ T lymphocytes specific for an epitope of the 16-kD alpha-crystalline antigen of Mycobacterium tuberculosis. Eur. J. Immunol., 29, 1753-1761, 1999.


  • Kundu, B. and Guptasarma, P.
    A Hydrophobic dye inhibits aggregation of molten carbonic anhydrase during thermal unfolding and refolding. Proteins, 37, 321-324, 1999.


  • Chaudhary, Anita; Vasudha, S.; Rajgopal, K.; Sudha-Komath, Sneha; Garg, N.; Yadav, Mahavir; Mande, S.C. and Sahni, G.
    Function of the central domain of Streptokinase in substrate plasminogen docking and processing revealed by site-directed mutagenesis. Protein Sci., 8, 2791-2805, 1999.


  • Walia, K.; Ghosh, S.; Singh, H.; Nair, G.B.; Ghosh, Amit; Sahni, G.; Vohra, H. and Ganguly, N.K.
    Purification and characterisation of novel toxin produced by V. cholerae 01. Infect. Immun., 67, 5215-5222, 1999.


  • Thakur, A.K.; Ashish & Kishore, R.
    Novel hydrogen bonding ring motifs in a model peptide: Crystal & molecular confirmation. Chem. Comm., 1643-1644, 1999.


  • Chopra, Rohini; Sharma, Vishva Mitra and Ganesan, K.
    Elevated growth of Saccharomyces cerevisiae ATH1 null mutants on glucose is an artifact of non-matching auxotrophies of mutant and reference strains, Appl. Environ. Microbiol., 65, 2267-2268, 1999.


  • Taneja, B. and Mande, S.C.
    Conserved structural features and sequence patterns in the GroES fold family. Prot. Eng., 12, 815-818, 1999.


  • Das, G.; Vohra, H.; Saha, B.; Agrewala, J.N. and Mishra, G.C.
    Apoptosis of Th1-like cells in experimental tuberculosis. Clin. Exp. Immunol., 115, 324-328, 1999.


  • Thakur, A. and Kishore, R.
    An all-anti conformation of the
    b -Ala moiety in crystalline state. Tetrahedron Lett., 40, 5091-5094, 1999.


  • Kaur, Rupinder and Bachhawat, A.K
    . The yeast multidrug resistance pump, Pdr5p, confers reduced drug resistance in erg mutants of Saccharomyces cerevisiae, Microbiology, 145, 809-818, 1999.


  • Ingavale, S.S. and Bachhawat, A.K.
    Restoration of inositol prototrophy in fission yeast Schizosaccharomyces pombe. Microbiology, 1999.


  • Ashish; Banumathi, S.; Velmurugan, D.; Anushree and Kishore, R.
    Induced conformational preferences in a non-chiral
    b -Ala residue: X-ray diffraction, 1H NMR, FT-IR and CD studies of Boc- b -Ala-D-Ala-NHCH3 and Boc- b -Ala-L-Ala-NHCH3. Tetrahedron, 55, 1999, 13791-13804.


  • Chakraborti, P.K.; Bhatt, K.; Banerjee, S.K. and Misra, P.
    Role of ABC imposter in Mycobacterial drug resistance. Bioscience Rep., 19, 293-300, 1999.


  • Mehta, R.K. and Singh, J.
    A bridge-overlap extension PCR method for constructing chimeric genes. Biotechniques, 26, 1080-1086, 1999.


  • Jyot, Jeevan; Gautam, J.K.; Raje, Manoj and Ghosh, Amit.
    Localization of DNAK & GroEL in Vibrio cholerae. FEMS Microbiol. Lett., 172, 165-171, 1999.


  • Patnaik, P.R.
    Application of neural networks to the recovery of biological products. Biotechnol. Adv., 17, 477-488, 1999.


  • Thungapathra, M.; Sharma, C.; Gupta, N.; Ghosh, R.K.; Mukhopadhyay, A.; Kole, H.; Nair, G.B. and Ghosh, Amit.
    Construction of a recombinant live oral vaccine from a non- toxigenic strain of V. cholerae 01 serotype Inaba biotype EL Tor and assessment of reactogenicity and immunogenecity in the rabbit model. Immunol. Lett., 68, 219-227, 1999.


  • Samanta, S.K.; Chakraborti, A.K. and Jain, R.K.
    Degradation of phenanthrene by different bacteria: Evidence for novel transformation sequences involving the formation of 1- naphthal. Appl. Microbiol. Biotechnol., 53, 97-108, 1999.


  • Sani, R.K. and Banerjee, U.C.
    Decolorization of triphenylmethane dyes and textile and dye-stuff effluents by Kurthia sp. Enzy. Microbial Tech., 24, 433-437, 1999.


  • Raghavendra, V.; Agrewala, J.N. and Kulkarni, S.K.
    Role of centrally administered melatonin and inhibitors of COX and NOS in LPS-induced hyperthermia and adipsia. Prostaglan. Leuko. Ess. Fatty Acids, 60, 249-253, 1999.


  • Goel, Apollina; Harpeet, Vohra and Varshney, Grish C. Strain specific recognition of live Leishmania donovani promastigotes by homologous antiserum raised against a crude membrane fraction of infected macrophages. Parasitol. Res., 85, 19-24, 1999.


  • Banerjee, U.C.; Sani, R.K.; Azmi, Wamik and Soni, Raman.
    Thermostable alkaline protease from Bacillus brevis and its characterization as a laundry detergent additive. Process Biochem., 1999.


  • Patnaik, P.R.
    Penicillin fermentation revisited: A topological analysis of kinetic multiplicity. Process Biochem., 34, 737-743, 1999.


  • Patnaik, P.R.
    Improvement of the microbial production of streptokinase by controlled filtering of process noise. Process Biochem., 35, 309-315, 1999.


  • Singh, Jasvir; Vohra, R.M. and Sahoo, D.K.
    Alkaline protease from a new obligate alkalophilic isolate of Bacillus sphaericus. Biotechnol. Lett., 21, 921-924, 1999.


  • S, Jasvir; Gill, N.; Devasahayam, G. and Sahoo, D.K.
    Studies on alkaline protease produced by Bacillus sp. NG312. Appl. Biochem. Biotechnol., 76, 57-63, 1999.


  • Patnaik, P.R.
    Spectral analysis of a nonideal bioreactor for a recombinant fermentation with run-away plasmids. Bioprocess Engng., 20, 31- 36, 1999.


  • Patnaik, P.R.
    Transient sensitivity analysis of a cybernetic model of microbial growth on two substrates. Bioprocess Engng., 21, 135-140, 1999.


  • Awasthi, N.; Kumar, A.; Makkar, R. and Cameotra, Swaranjit Singh.
    Biodegradation of soil-applied endosulfan in the presence of a biosurfactant. J. Environ. Sci. Health, 34, 793-803, 1999.


  • Nayak, D.P. and Vyas, V.V.
    Stability and expression of a recombinant shuttle plasmid in Escherichia coli during fedbatch cultivation. World J. Microbiol. Biotechnol., 1999.


  • Banumathi, S.; Velmurugan, D.; Subramanian, E.; Ashish & Kishore, R.
    Tert-Butoxycarbonyl-L-Leucyl-L-threonin-amide. Acta. Cryst. C 55, 78-79, 1999.


  • Patnaik, P.R.
    Coupling of a neural filter and a neural controller for improvement of fermentation performance. Biotechnol. Tech., 13, 735-738, 1999.


  • Sani, R.K.; Chakraborti, S.; Sobti, R.C.; Patnaik, P.R. and Banerjee, U.C.
    Characterization and some reaction engineering aspects of thermostable extracellular
    b -galactosidase from a new Bacillus sp. Folia Microbiologica, 44, 121-125, 1999.


  • Singh, J.
    Mating type switching in fission yeast- A unique model for devlopment & differentiation. Current Science, 77, 1262-1272, 1999.


  • Guptasarma, P.
    Proposing T-independent B-cell activation by prion rods. Could disease result from ‘chaperoning’ of nascent prions by PrPsc-cognate immunoglobulins?. Current Science, 77, 508-514, 1999.


  • Patnaik, P.R.
    Plasmid stability in a non-homogeneous bioreactor for a recombinant fed-batch fermentation. Can. J. Chem. Engng., 77, 602-607, 1999.


  • Kothekar, V.; Ashish; Gupta, D. and Kishore, R.
    Theoretical study of conformational flexibility of tuftsin in vaccum and in aqueous environment. Ind. J. Biochem. Biophy., 36, 14-28, 1999.


  • Patnaik, P.R.
    Reactive extraction with liquid emulsion membranes: The finite reaction zone concept. React. Kinet. Catal. Lett., 68, 347-354, 1999.


  • Patnaik, P.R.
    Fractal analysis of a recombinant fermentation with imperfect mixing and disturbances. Hung. J. Ind. Chem., 27, 175-178, 1999.


  • Kumar, Ish and Jolly, R.S.
    Effect of alpha-methyl substituent on chemoselectivity in esterase catalyzed hydrolysis reaction. Org. Lett., 1, 607-610, 1999.


  • Makkar, R.S. and Cameotra, Swaranjit Singh. Biosurfactant production by microorganisms on unconventional carbon sources. J. Surfactants Detergents, 2, 237-241, 1999.


  • Makkar, R.S. and Cameotra, Swaranjit Singh.
    Structural characterization of a biosurfactant produced by Bacillus subtilis at 45? C. J. Surfactants Detergents, 2, 367-372, 1999.


  • Kumar, R.; Jolly, R.S. and Banerjee, U.C.
    Reduction of gentian violet dye by Kurthia sp. and evaluation of toxicity. Adv. Environ. Res., 368, 1999.


  • Stark, B.C.; Webster, D.A. and Dikshit, K.L.
    Vitreoscilla hemoglobin molecular biology, biochemistry and practical applications. Rec. Res. Dev. Biotechnol. Bioeng., 2, 155-174, 1999.


  • Sani, R.K. and Banerjee, U.C.
    Decolorization of Acid Green 20, a textile dye by white rot fungus, Phanerochaete chrysosporium in low cost medium. Adv. Environ. Res., 2, 485-495, 1999.


  • Sani, R.K. and Banerjee, U.C.
    Screening of organisms applicable to the decolorization of triphenylmethane dyes and optimization of biotransformation conditions in stirred tank reactor. Ind. J. Env. Ecoplan., 2, 1-9, 1999.


  • Azmi, Wamik and Banerjee, U.C.
    Decolorization of triphenylmethane dyes by the growing and resting cells of Bacillus sp. Ind. J. Env. Ecoplan, 2, 241-246, 1999.


  • Sani, R.K.; Jolly, R.S. and Banerjee, U.C.
    Reduction of gentain violet to leucogentian violet by Kurthia sp. and assessment of toxicity. Adv. Environ. Res., 3, 368-377, 1999.


  • Naresh Kumar
    Life form patenting: A case for setting up International Depositary Authorities in India. J. Intellec. Prop. Rights, 4, 8-15, 1999.


  • Patnaik, P.R.
    Bistability of stationary states during competition between plasmid-bearing and plasmid-free cells under selection pressure. Trans. Inst. Chem. Engrs., 77, Part-C, 243-247, 1999.


  • Patnaik, P.R.
    Neural control of an imperfectly mixed fed-batch bioreactor for recombinant beta-galactosidase. Biochem. Engng. J., 3, 113-120, 1999.


  • Goel, A.; Jain, M. and Varshney, G.C.
    Homologous antiserum raised against crude membrane fraction of Leishmania donovani infected macrophages inhibits promastigote growth in vitro. J. Parasitic Diseases, 23, 133-134, 1999.


  • Garg, P.; Basu, A.; Ramamurthy, T.; Sharma, C.; Maiti, S.; Ghosh, Amit; Bhattacharyya, S.K.; Takeda, Y. and Nair, G.B.
    Emerging clones of V. cholerae and multi drug resistance. In “Emerging and re-emerging diseases” (Mahajan, R.C. and Therwath, A. eds.), Indian National Science Academy, New Delhi, pp. 31-42.


  • Ghosh, Amit; Thungapathra, M.; Sharma, C.; Gupta, N.; Ghosh, R.K.; Mukhopadhyay, A.; Kole, H. and Nair, G.B.
    Efforts towards the development of oral cholera vaccines in India against the backdrop of global endeavours in “Diarrhoeal Diseases- Research Perspectives” (Appaji Rao, N. and Ganguly, N.K. eds), Indian National Science Academy and Narosa Publishing House, New Delhi, pp. 1-16.


  • P. Savita; Raha, K.; Annapurna, P.S.; Kaur, S.; Islam, Najmul; Zaman, S.; Raje, M.; Dubey, A.B.; Jain, N.K.; Kothekar, V.; Tyagi, J.S. and Prasad, H.K.
    Chapter on “DNA binding protein HLPMt of Mycobacterium tuberculosis: A target of human immune response”. In Immunomodulation, ed. S.N. Upadhyay, Narosa Publishing House, New Delhi, 1999.


  • Chakraborti, P.K.; Banerjee, S.K.; Bhatt, K.; Misra, P. and Rana, S.
    Mechanism of drug resistance: Novel role of phosphate specific transporter. In Drug Resistance: Mechanisms and Management. (eds. R.L. Singhal and O.P. Sood), Communicore, Ranbaxy Science Foundation, New Delhi, India, pp. 22-25, 1999.


  • Sobti, R.C.; Kaushal, A. and Banerjee, U.C.
    Textile dyes: Their toxicity and the role of natural and genetically engineered microbes in their biodegradation. In Trends in Environmental Mutagenesis, Tausco Book Publishers, New Delhi, 1999.




PUBLICATIONS DURING 1998




  • Kimsey, Harvey, H.; Nair, G. Balakrish; Ghosh, Amit and Waldor, Matthew, K.
    Diverse CTX
    fs and evolution of new pathogenic Vibrio cholerae. Lancet, 352, 457-458, 1998.


  • Singh, J.; Goel, Vintoo and Klar, Amar J.S.
    A novel function of the DNA repair gene rhp6 in mating type silencing by chromatin remodeling in fission yeast. Mol. Cellular Biol., 18, 5511-5522, 1998.


  • Agrewala, Javed N.; Suvas, S.; Verma, R.K. and Mishra, G.C.
    Differential effect of anti-B7.1 and anti-M150 antibodies in restricting the delivery of costimulatory signals from B cells and macrophages. J. Immunol., 160, 1067-1077, 1998.


  • Nihalani, D.; Kumar, R.; Rajagopal, K. and Sahni Girish.
    Role of the amino-terminal region of streptokinase in the generation of a fully functional activator complex probed with synthetic peptides. Protein Science, 7, 637-648, 1998.


  • Sharma, Charu; Ghosh, Amit; Dalsgaard, A.; Forslund, A.; Ghosh, R.K.; Bhattacharyya, S.K. and Nair, G.B.
    Molecular evidence that a distinct V. cholerae 01 biotype E1 Tor strain in Calcutta may have spread to the African Continent. J. Clin. Microbiol., 36, 843-844, 1998.


  • Sharma, Charu; Thungapathra, M; Ghosh, A.; Mukhopadhyaya, A.K.; Basu, A.; Mitra, R.; Basu, I.; Bhattacharya, S.K.; Shimada, T.; Ramamurthy, T.; Takeda, T.; Yamasaki, S.; Takeda, Y. and Nair, G.B.
    Molecular analysis of non-01, non-0139 V. cholerae associated with an unusual upsurge of the incidence of cholera like disease in Calcutta, India. J. Clin. Microbiol., 36, 756-763, 1998.


  • Mukhopadhyay, A.K.; Basu, A.; Garg, P.; Ghosh, Amit; Bhattacharyya, S.K.; Takeda, Y. and Nair, G.B.
    Molecular epidemiology of the re-emerged Vibrio cholerae 0139 Bengal in India. J. Clin. Microbiol., 36, 2143-2152, 1998.


  • Ingavale, S.S.; Kaur, Rupinder; Aggarwal, Parul and Bachhawat, A.K.
    A minisatellite sequence within the propeptide region of the vacuolar carboxypeptidase Y gene of Schizosaccharomyces pombe. J. Bacteriol., 180, 3727-3729, 1998.


  • Banerjee, S.K.; Misra, P.; Bhatt, K.; Mande, S.C. and Chakraborti, P.K.
    Identification of an ABC transporter gene that exhibits m-RNA level overexpression in fluoroquinolone resistant Mycobacterium smegmatis. FEBS Lett., 425, 151-156, 1998.


  • Joshi, M.; Mande, S.C. and Dikshit K.L.
    Hemoglobin biosynthesis in Vitreoscilla stercoraria DW: Cloning, expression and characterisation of a new homolog of bacterial globin gene. Appl. Environ. Microbiol., 64, 2220-2228, 1998.


  • Pratap, J. and Dikshit, K.L.
    Effect of signal peptide changes on the extracellular processing of streptokinase from E.coli: Requirement of secondary structure at the cleavage junction. Mol. Gen. Genet., 258, 326-333, 1998.


  • Agrewala, Javed N.; Kumar, B. and Vohra, H.
    Potential role of B7.1 and CD28 molecules in immunosuppression in leprosy. Clin. Exp. Immunol., 111, 56-63, 1998.


  • Shaji, A.V.; Kulkarni, S.K. and Agrewala, Javed N.
    Regulation of secretion of IL-4 and IgG1-isotype by melatonin stimulated ovalbumin specific T cells. Clin. Exp. Immunol. 111, 181-185, 1998.


  • Agrewala, J.N. and Wilkinson, R.J.
    Differential regulation of Th1 and Th2 cells by p91-110 and p21- 40 peptides of the 16-kd alpha-crystalline antigen Mycobacterium tuberculosis. Clin. Exp. Immunol., 114, 392-397, 1998.


  • Dikshit, K.L.; Orri, N.; Navani, N.; Patel, S.; Stark, B.C. and Webster, D.A.
    Site directed mutagenesis of bacterial hemoglobin: Role of glutamine (E7) in oxygen binding in the distal heme pocket. Arch. Biochem. Biophys., 349, 161-166, 1998.


  • Kishore, R. and Thakur, A.
    An Observation of a folded b-Ala Conformation in a model peptide: Boc-L-Pip-b-Ala-NHCH3, X-ray diffraction study. Tetrahedron Lett., 39, 9553-9556, 1998.


  • Kumar, Kamal and Jolly, R.S.
    Catalysis of intramolecular [4+2] cycloaddition by palladium complexes. Tetrahedron Lett., 39, 3047-3050, 1998.


  • Rana, S.; Bisht, D. and Chakraborti, P.K.
    Activation of rat androgen receptor by androgenic ligands is unaffected by antiandrogens in Saccharomyces cerevisiae. Gene, 209, 247-254, 1998.


  • Agrewala, J.N.; Suvas, S.; Joshi, A.; Bhatanagar, A.; Vinay, D.S. and Mishra, G.C.
    M150 modulates the costimulatory signals delivered by B cells to T cells and enhances their ability to help B cells.J. IFN. Cyto. Res., 18, 297-304, 1998.


  • Basu, A.; Mukhopadhyay, A.K.; Sharma, C.; Jeevan Jyot; Gupta, N.; Ghosh, Amit; Bhattacharya, S.K.; Takeda, Y.; Faruque, A.S.G.; Albert, M.J. and Nair, G.B.
    Heterogeneity in the organization of the CTX genetic element in strains of V. cholerae 0139 Bengal isolated from Calcutta, India and Dhaka, Bangladesh and the possible link to the dissimilar incidence of 0139 cholerae in the two locally. Microbial Pathogenesis, 24, 175-183, 1998.


  • Bag, P.K.; Maiti, S.; Sharma, C.; Ghosh, Amit; Mukhopadhyay, A.K.; Basu, A.; Mitra, R.; Takeda, Y.; Bhattacharyya, S.K. and Nair, G.B.
    Rapid spread of the new clone of V. cholerae 01 EL Tor in cholera epidemic cases in India. Epidemiol. Infection, 121, 245-251, 1998.


  • Mohapatra, B.R.; Banerjee, U.C. and Bapuji, M.
    Characterization of a fungal amylase from Mucor sp. associated with the marine sponge Spirastrella sp. J. Biotechnol., 60, 113- 117, 1998.


  • Das, G.; Vohra, H.; Saha, B.; Agrewala, J.N. and Mishra, G.C.
    Leishmania donovani infection of a susceptible host result in apoptosis of Th1-like cells: rescue of anti-leishmanial CMI by providing Th1-specific bystander costimulation. Microbiol. Immunol., 42, 795-801, 1998.


  • Samanta, S.K.; Mamta Rani and R.K. Jain.
    Segregational and structural instability of a recombinant plasmid carrying genes for naphthalene degradation. Lett. Appl. Microbiol., 26, 265-269, 1998.


  • Makkar, Randhir S. and Cameotra Swaranjit S.
    Production of biosurfactant at mesophilic and thermophilic conditions by a strain of Bacillus subtilis. J. Ind. Microbiol. Biotechnol., 20, 48-52, 1998.


  • Sani, Rajesh Kumar; Azmi, Wamik and Banerjee U.C.
    Comparison of static and shake cultures in the decolourisation of textile dyes and dye effluent by Phanerochaete chrysosporium. Folia Microbiologica, 43, 85-88, 1998.


  • Mohapatra, B.R.; Bapuji, M. and Banerjee, U.C.
    Production and properties of L-asparaginase from Mucor sp. associated with the marine sponge Spirastrella sp. Cytobios, 92, 165-173, 1998.


  • Azmi, Wamik; Sani, R.K. & Banerjee, U.C.
    Biodegradation of triphenylmethane dyes. Enzy. Microbial. Tech., 22, 185-191, 1998.


  • Agrewala, J.N.; Upma and Banyal, H.S.
    A 24,000g sediment of Plasmodium berghei induces IL-1 response in mice and exhibits protection against malaria infection. Parasit. Hung., 31, 13-21, 1998.


  • Chaudhary, Anita; Gupta, L.K.; Gupta, J.K. & Banerjee, U.C.
    Levanase- a better control of slime problem in paper industry. Biotechnol. Adv., 16, 899-9122, 1998.


  • Patnaik, P.R.
    Dispersion-induced behavior in sub-critical operation of a recombinant fed-batch fermentation with run-away plasmids. Bioprocess Engng., 18, 219-226, 1998.


  • Patnaik, P.R.
    Analysis of the effect of interruptions in substrate inflow on a fed-batch fermentation with recombinant bacteria. Biochem. Eng. J., 1, 121-129, 1998.


  • Patnaik, P.R.
    A sufficiency analysis of asymptotic stability in continuous recombinant fermentation with auxotrophic mutants. Biochem. Engng. J., 2, 157-160, 1998.


  • Swaranjit Singh and Makkar, R.S.
    Synthesis of biosurfactants in thermophilic conditions. Appl. Microbiol. Biotechnol., 50, 520-529, 1998,


  • Singh, V.; Raje, M.; Nain, C.K. and Singh, K.
    Routes of transmission in the hepatitis E epidemic of Saharanpur. Trop Gastroenterol., 19, 107-9, 1998.


  • Raje, Manoj and Mishra, G.C.
    Autoradiography. Invited chapter in Encyclopedia of Immunology. 2nd Edition, ed. Peter J. Deves and Ivan M. Roitt. Academic Press Ltd., 296-300, 1998.


  • Patnaik, P.R.
    Recovery of biological products by liquid emulsion membranes. Bioseparation & Bioprocessing, Wiley-VCH (1998) Ch. 11.


  • Patnaik, P.R.
    Neural network applications to fermentation processes. Bioseparation & Bioprocessing, Wiley-VCH (1998) Ch. 14.




PUBLICATIONS DURING 1997


  • Kaur, A.; Ingavale, S.S. and Bachhawat, A.K.
    PCR-mediated direct gene disruption in Schizosaccharomyces pombe. Nucleic Acid Res., 25, 1080-1081, 1997.


  • Vandana Sharma; Manoj Raje and Krishnasastry, M.V.
    The role of the amino terminus in the kinetics and assembly of alpha-hemolysin of Staphylococcus aureus. J. Biol. Chem., 272, 24858-24863, 1997.


  • Sharma, Charu; Nair, G.B.; Mukhopadhyay, A.K.; Bhattacharya, S.K.; Ghosh, R.K. and Ghosh, Amit.
    Molecular characterization of Vibrio cholerae 01 Biotype ElTor strain isolated between 1992 and 1996 in Calcutta India: Evidence for the emergfence of a new clone of the ElTor biotype. J. Infect. Dis., 175, 1134-1141, 1997.


  • Chaudhuri, B; Ingavale, S.S. and Bachhawat, A.K.
    apdl+, a gene required for red pigment formation in ade6 mutant of Schizosaccharomyces pombe encodes an enqyme required for glutathione biosynthesis: A role for glutathione and a glutathione-conjugate pump. Genetics, 145, 75-83, 1997.


  • D. Nihalani; G.P.S. Raghava and Girish Sahni.
    Mapping of the plasminogen binding site of streptokinase with short synthetic peptides. Protein Science, 6, 1284-1292, 1997.


  • Sharma, Charu; Maiti, Sankar; Mukhopadhyay, A.K.; Basu, A.; Basu, I.; Nair, G.B.; Mukhopadhyaya, R.; Das, B.; Kar, S.; Ghosh, R.K. and Ghosh, Amit.
    Unique organization of the CTX genetic element in V. cholerae 0139 strains which reemerged in Calcutta, India in September 1996. J. Clin. Microbiol., 35, 3348-3350, 1997.


  • Ashish and Kishore, R.
    Thermodynamic characterizations of an intramolecularly hydrogen bonded C5-structure across proteinogenic residue. FEBS Lett., 417, 97-100, 1997.


  • Sharma, R. and Vohra, R.M.
    A thermostable D-hydantoinase isolated from a mesophilic Bacillus sp. AR9. Biochem. Biophys. Res. Commun., 234, 485-488, 1997.


  • Agrewala, J.N.; Deacock, S.; Jurcevic, S. and Wilkinson, R
    . Peptide recognition by T cell clones of HLA-DRB1*1501/*0901 heterozygous donor is promiscuous only between parental alleles is limited to parental HLA-DR alleles. Human. Immunol., 55, 34- 38, 1997.


  • Ashish and Kishore, R.
    1H NMR spectroscopic signatures of an intraresidue hydrogen bonded C5 structure. Tetrahedron Lett., 38, 2767-2770, 1997.


  • Pitchappan, R.M.; Agrewala, J.N.; Dheenadhayalan, V. and Ivanyi, J.
    Major histocompatibility complex restriction in tuberculosis susceptibility. J. Biosci., 221, 47-57, 1997.


  • Vikas Pruthi and Cameotra, Swaranjit Singh.
    Identification of biosurfactant production by bacterial strains using cell surface hydrophobicity techniques. Biotechnol. Techniques, 11, 671-674, 1997.


  • Randhir S. Makkar and Cameotra, Swaranjit Singh.
    Utilization of molasses for biosurfactant production by two Bacillus strains at thermophilic conditions. J. American Oil Chemists Society, 74, 887-889, 1997.


  • Pruthi, V. and Cameotra, Swaranjit Singh.
    Production of a biosurfactant exhibiting excellent emulsification and surface active properties by Serratia marcescens. World J. Microbiol. Biotechnol., 13, 137-139, 1997.


  • Pruthi, V. and Cameotra, Swaranjit Singh.
    Production and properties of a biosurfactant synthesized by Arthrobacter protophormiae- an Antarctic strain. World J. Microbiol. Biotechnol., 13, 133-135, 1997.


  • P.R. Patnaik
    Influence of Macromixing on Plasmid Stability during Batch Fermentation with Recombinant Bacteria. Ind. J. Chem. Technol., 4, 291-297, 1997.


  • P.R. Patnaik
    A recurrent neural network for a fed-batch fermentation with recombinant E.coli subject to inflow disturbances. Process Biochemistry, 32, 391-400, 1997.


  • P.R. Patnaik
    Spectral analysis of the effect of inflow noise on a fed-batch fermentation for recombinant beta-Galactosidase. Bioprocess Engng., 17, 93-97, 1997.


  • P.R. Patnaik
    Artificial intelligence as a tool for automatic state estimation and control of bioreactors. Lab Robotics Automation, 9, 297-304, 1997.


  • P.R. Patnaik
    Principal component analysis of the effect of inflow disturbances on recombinant beta-galactosidase fermentation. Hung. J. Indl. Chem., 25, 261-264, 1997.


  • P.R. Patnaik
    Application of fuzzy logic for state estimation of a microbial fermentation with dual inhibition and variable kinetics. Trans. Inst. Chem. Engrs. Part-C, 75, 239-246, 1997.


  • Chaudhary, Anita; Gupta, L.K.; Gupta, J.K. and Banerjee, U.C.
    Study of slime forming organisms of a paper mill-slime production, characterization and control. J. Indus. Microbiol. Biotech., 18, 348-352, 1997.


  • Mudgal, P.S.; Varshney, G.C. and Anand, S.R.
    Histone kinase activity of buffalo sperm chromatin. Arch. Androl., 38, 191-200, 1997.


  • Choudhury, A.; Goel, A.; Raje, M.; Vohra, H. and Varshney, G.C.
    Recognition of the parasite infected cell surface determinants by homologous antiserum raised against infected cell membranes. Parasitol. Res., 83, 747-754, 1997.


  • Makkar, R.S. and Cameotra, Swaranjit Singh.
    Biosurfactant production by a thermophilic Bacillus subtilis strain. J. Ind. Microbiol. Biotechnol., 18, 37-42, 1997.


  • Guptasarma, P.
    Resolving multiple protein conformers in equilibrium unfolding reactions : A time-resolved emission spectroscopic study of azurin. Biophys. Chem., 65, 221-228, 1997.


  • Radha Kishan, K.V.; Giorgio, Scita; William, T. Wong; Pier Paolo Di Fiore and Marcia, E. Newcomer.
    The SH3 domain of Eps8 exists as a novel intertwined dimmer. Nature Str. Biol., 4, 739–743, 1997.


  • Sidhu, G.S.; Sharma, P.; Chakrabarti, T. and Gupta, J.K.
    Strain improvement for the production of a thermostable a-amylase. Enz. Microbial. Technol., 21, 525-530, 1997.


  • Bhui, A.J.; Bureau, J.P.; Parikh, V.A.; Scherrer, K.; Kukreti, R.; Mondal, A.K. and Therwat. A.
    Proliferation markers and cell cycle associated expression of prosomes in breast cancers of Parsis and non-Parsis. Int. J. Oncology, 11, 297-304, 1997.


  • Verlinde, C.L.M.J.; Kin, H.; Bernstein, B.; Mande, S.C. and Hol, W.G.J.
    Antitrypanosomiasis drug development based on structures of glycolytic enzymes. In:Structure-based drug design (Ed.) P. Veerapandian, Marcel Dekker Inc., New York, pp. 365-394, 1997.




PUBLICATIONS DURING 1996


  • Agrawal, P.; Latha, S. and Mahadevan
    A. Utilization of phenylalanine and phenylacetic acid by Pseudomonas solanacearum. App. Biochem. Biophysics, 61, 379-391, 1996.


  • Agrewala, J.N.; Owais, M.; Gupta, C.M. and Mishra,G.C.
    Antigen incorporation into liposomes results in the enhancement of IL-4 and IgG-1 secretion: An evidence for preferential expansion of Th-2 cells. J. Cytokine Mol. Ther., 2, 59-65, 1996.


  • Ananthapadmanaban, D.
    Commentary on: "Thermostability of B-xylosidase from Aspergillus sydowii MG49 by M. Ghosh and G. Nanda, FEBS Letters, 330, 275-278 (1993)" FEBS Letters, 385, 244, 1996.


  • Arora, A. and Gupta, C.M.
    Glycerol backbone conformation in phosphatidylcholines is primarily determined by the intramolecular stacking of the vicinally arranged acyl chains. Biochim. Biophys. Acta, 1324, 47-60, 1996.


  • Arora, A. and Gupta, C.M.
    Novel thermal phase transition properties of phosphatidylcholine analogs containing 1,2,4-butanetriol as their backbone. Biochim. Biophys. Acta, 1324, 61-68, 1996.


  • Weller, U.; Muller, L.; Messer, M.; Valeva, A.; Tranum-Jensen, J.; Agrawal, P.; Biermann, C.; Biermann, C.; Bobereiner, A.; Kohoe, M.A. and Bhakdi, S.
    Expression of active streptolysin-O in E. coli as a maltose binding protein Streptolysin-O fusion protein. Eur. J. Biochem., 236, 34-39, 1996.


  • Balasubramanian, K. and Gupta, C.M.
    Transbilayer phosphatidylethanolamine movements in yeast plasma membrance. Evidence for protein-mediated energy dependent mechanism(s). Eur. J. Biochem., 240, 798-806, 1996.


  • Sharma, C.; Nair, G.B.; Mukhopadhyay, A.K.; Bhattacharya, S.K.; Ghosh, R.K. and Ghosh, Amit.
    Molecular characterization of Vibrio cholerae 01 Biotype EITor strain isolated between 1992 and 1995 in Calcutta, India: Evidence for the emergence of a new clone of the EITor biotype. J. Infect. Dis., 175, 1134-1141, 1996.


  • Bandhu, H.K.; Puri, Sanjiv; Shahi, J.S.; Garg, M.L.; Nirmal Singh; Mandal P.C.; Suri, C.R. & Trehan, P.N.
    An evaluation of the sources of air pollution in the city of Chandigarh, India. Nucl. Inst. Meth. B, 141, 341-344, 1996.


  • Banerjee, U.C. and Patnaik, P.R.
    Kinetic analysis of the enzymatic conversion of rifamycin B to rifamycin S. Indian Chem. Engr., 38, 28-30, 1996.


  • Banerjee, Sanjiban K.; Bhatt, Kamlesh; Rana Seema; Misra, Parimal and Chakraborti, P.K.
    Involvement of an efflux system in mediating high level of fluoroquinolone resistance in Mycobacterium smegmatis. Biochem. Biophys. Res. Commun., 226, 362-368, 1996.


  • Chaudhary, Anita; Gupta, L.K.; Gupta, J.K. and Banerjee, U.C.
    Production of levanase-a slime hydrolyzing enzyme by Rhodotorula sp. Folia Microbiologica, 41, 353-356, 1996.


  • Chaudhary, Anita; Gupta, L.K.; Gupta, J.K. and Banerjee, U.C.
    Purification and properties of levanase from Rhodotorula sp. J. Biotech., 46, 55-61, 1996.


  • Ghei, S.K.; Sengupta, U.; Agrewala, J.N.; Kailash, S. (et. al.)
    Association of HLA antigens with leprosy,p. 273-278. In Singh, J.(eds), Current Concepts in Human Genetics. Guru Nanak Dev University, Amritsar, 1996.


  • Ghosh, A., Thungapatra, M. and Ghosh, R.K.
    Strategies for production of a potential candidate vaccine for cholera. Indian J. Med. Res., 104, 60-75, 1996.


  • Gupta, Reena; Dogra, Nisha; Raje, Manoj and Majumdar, Sekhar.
    Attempts to characterize the mechanisms involved in the growth inhibition of Mycobacterium microti in interferon-
    g or tumor necrosis factor-a activated J774A.1 cells. FEMS Microbiol. Lett., 140, 171-178, 1996.


  • Jain, R.K.
    The molecular cloning of genes specifying some enzymes of the 3,5-xylenol degradative pathway. Applied Microbiol. Biotechnol., 45, 502-508, 1996.


  • Jitesh Pratap; Jagdeep Kaur; Rajamohan, G.; Dawinder Singh & Dikshit, K.L.
    Role of N-terminal domain of streptokinase in protein transport. Biochem. Biophys. Res. Commun., 227, 303-310, 1996.


  • Jurcevic, Stipo; Travers, P.J.; Hills, A.; Agrewala, J.N.; Morena, C. and Ivanyi, J.
    Distinct conformations of a peptide bound to HLA-DR1 or DRB5*0101 suggested by molecular modelling. Intern. Immunol., 8, 1807-1814, 1996.


  • Kar, S.; Ghosh, R.K.; Ghosh, A.N. and Ghosh, Amit.
    Integration of a novel filamentous bacteriophage VSK from V. cholerae 0139 into the host chromosomal DNA. FEMS Microbiol. Lett., 145, 17-22, 1996.


  • Kishore Raghuvansh.
    Identification of novel stereogeometrical features in B-Ala residue. Tetrahedron Lett., 37, 5747-5750, 1996.


  • Mainfroid Veronique; Terpstra, Peter; Beauregard, March Frere; Jean-Marie; Mande, S.C.; Hol, Wim G.J.; Martial, Joseph A. and Goraj, Karine.
    Three hTIM mutants that provide new insights on why TIM is a Dimer. J. Mol. Biol., 257, 441-456, 1996.


  • Maingroid, Veronique; Mande, S.C.; Hol, Wim G.J.; Martial, Joseph A. and Goraj, Karine.
    Stabilization of human triosephosphate isomerase by improvement of the stablilty of individual- Helices in dimeric as well as monomeric forms of the protein. Biochem., 35, 4110-4117, 1996.


  • Mamta Rani; Prakash Dhan; Sobti, R.C. and Jain R.K.
    Plasmid mediated degradation of o-phthalate and salicylate by Moraxella sp. Biochem. Biophys. Res. Commun., 220. 377-381, 1996.


  • Mande Sekhar C.; Mehra, Vijay; Bloom, Barry R., Hol. Wim G.J.
    Structure of the heat shock protein chaperonin-10 of Mycobacterium leprae. Science, 271, 203-207, 1996.


  • Mohapatra, B.R.; Sani, R.K. and Banerjee, U.C.
    Characterization of L-asparaginase from Bacillus sp. isolated from intertidal marine alga (Sargassum sp.). Lett. Appl. Microbiol., 21, 380-383, 1996.


  • Moo-Young, M.; Chisti, Y.; Zhang, Z.; Garrido, F.; Banerjee, U.C. and Vlach, D.
    Recombinant DNA Biotechnolgy III: The integration of Biological and Engineering Sciences, Edited by Juan A. Asenjo and Barbara A. Andrews, The New York Academy of Sciences,New York, USA. Annals of the New York Academy of Sciences, 782, 391-401, 1996.


  • Navani, Naveen K.; Joshi, Meenal A. and Dikshit K.L. Genetic transformation of Vitreoseilla sp. Gene, 117, 265-266, 1996.


  • Panda, S.K.; Nanda, S.K.; Ghosh, Amit; Sharma, C.; Shivaji, S. et. al.
    The 1994 plague epidemic of India: Molecular diagnosis and characterization of Y. pestis isolates from Surat and Beed. Curr. Sci., 71, 794-799, 1996.


  • Patnaik, P.R.
    Incomplete mixing in large bioreactors- A study of its role in the fermentative production of streptokinase. Bioprocess Engg., 14, 91-96, 1996.


  • Patnaik, P.R.
    Neural network applications in the selective separation of biological products. Ind. J. Chem. Tech., 3, 11-16, 1996.


  • Patnaik, P.R. (1996).
    A Vuietic model for enzymatic couvebconi of rifamycu's by rifamyci oxidase from Curvtara luata. Ted.Chem. engr.38, 28-30.


  • Patnaik, P.R.
    Preliminary screening of neural network configurations for bioreactor applications. Biotech. Tech., 10, 967-970, 1996.


  • Patnaik, P.R.
    Imperfect mixing in a batch bioreactor for a class of microbial reactions with dual inhibition performance analysis for two methods of inoculation. Advances in Chemical Engg., Allied Publishers, New Delhi. 335-340, 1996.


  • Patnaik, P.R.
    On the role of reactive diffusion and pellet shape in the conversion of rifamycin B to rifamycin S by immobilised rifamycin oxidase. Hung J. Indl. Chem., 24, 193-197, 1996.


  • Patnaik, P.R.
    Neural simulation of an unsteady state continuous recombinant fermentation with imperfect mixing . Biotechnol Tech., 10, 573-578, 1996.


  • Patnaik, P.R.
    A recurrent neural network for a fed-batch fermentation with recombinant E. coli subject to inflow disturbances. Process Biochem., 37, 391-400, 1996.


  • Patnaik, P.R.
    Spectral analysis of the effect of inflow noise on a fed batch fermentation for recombinant B-Galactosidase. Bioprocess Engg., 17, 93-97, 1997.


  • Patnaik, P.R.
    Start-up sensitivity to the initial state of a batch bioreactor for a recombinant E. coli in a complex medium. Bioprocess Engg., 15, 215-219, 1996.


  • Prakash, Dhan; Chauhan, Ashvini and Jain R.K.
    Plasmid-encoded degradation of p-nitrophenol by Pseudomonas cepacia. Biochem. Biophys. Res. Commun., 224, 375-381, 1996.


  • Sobti, R.C.; Kaushal, A.; Kaushal, M. and Banerjee, U.C.
    Textile Dyes: Their toxicity and the role of natural and genetically engineered microbes in their biodegradation. Editors Sobti, R.C., Obe, G. and Quillardet, P. Trends in Environmental Mutagaenesis, 315-344, 1996.


  • Sonawane, V.C.; Jolly, R.S. and Vohra, R.M.
    Cephalosporin modification: An extracellular Glutaryl-7-ACA acylase from Bacillus sp. Biotech. lett., 18, 965-968, 1996.


  • Soni, S.K.; Sandhu, I.K.; Bath, K.S.; Banerjee, U.C. and Patnaik. P.R.
    Batch cultivation and extracellular amylase production by Saccharomycopsis capsularis, and its evaluation for starch saccharification. Folia Microbiologica, 41 243-248, 1996.


  • Suri, C. Raman and Mishra, G.C.
    Activating piezoelectric crystal surface by salinization for microgravimetric immunobiosensor application. Biosensors Bioelectronics, 11, 1199-1205, 1996.


  • Varshney, Grish C. and Gupta, C.M.
    Liposomes mediated drug delivery in infectious diseases. Proc. Natl. Sci. Acad. (India), 66, 1-13, 1996.


  • Vinay, D.S.; Raje, M. and Mishra, G.C.
    Characterization of novel co-stimulatory molecules: A 155-160 kD cell surface protein provides accessory help to CD4+ T cells to proliferate and differentiate. Mol. Immunol., 33, 1-14, 1996.


  • Xu, M.; Chakraborti, P.K.; Garabedian, M.J.; Yamamoto, K.R.and Simons, S.S.
    Modular structure of glucocorticoid receptor domains is not equivalent to functional independence. Stability and activity of the steroid binding domain are controlled by sequences in separate domains. J. Biol. Chem., 271, 21430-8, 1996.


  • Bhui, A.J.; Bureau, J.P.; Abbas, A.; Mondal, A.K.; Scherrer, K.; Kurkere, A. and Therwat, A .
    Novel cellular markers in breast cancer: Differential presence of p23K and p30.33K prosomal antigens in tumors of Parsi and non-Parsi women. Int. J. oncology, 9, 669 – 677, 1996.




PUBLICATIONS DURING 1995


  • Agrewala, J.N. and Mishra, G.C.
    A 38-kDa antigen of Mycobacterium tuberculosis predominantly induces the secretion of interleukin-2, interferon-gamma and IgG2a antibodies. Microbiol. Immunol., 39, 801-808, 1995.


  • Banerjee, U.C.; Chisti, Y. and Moo-Young, M.
    Protein enrichment of corn Stover using Neurospora sitophila. ICHEME Symposium series No. 137.


  • Mitra, S.N.; Kar, S.; Ghosh, R.K.; Pajni, S. and Ghosh, A.
    Presence of lysogenic phage in the outbreak strains of V. cholerae 0139. J. Med. Microbial., 42, 399-403, 1995.


  • Mukhopadhyay, A.K.; Garg, S.; Nair, G.B.; Kar, S.; Ghosh, R.K.; Pajni, S.; Ghosh, A.; Shimada, T.; Takeda, T. and Takeda, Y.
    Biotype traits and antibiotic susceptibility of Vibrio cholerae serogroup 01 before, during and after the emergence of the 1039 serogroup. Epidemiol. Infect., 115, 427-434, 1995.


  • Banerjee, U.C.; Chisti, Y. and Moo-Young, M.
    Effect of particle size and alkaline pretreatment on protein enrichment by Neurospora sitophila. Resources, Conservation and Recycling, 13, 139-146, 1995.


  • Nihalani, D. and Sahni, G.
    Streptokinase contains two independent plasminogen binding sites. Biochem. Biophys. Res. Commun., 217, 1245-1254, 1995.


  • Cameotra, Swaranjit Singh.
    Biosurfactant production by an oil field bacterial strain. J. Microbial. Biotechnol., 10, 8-16, 1995.


  • Jeevanjyot and Ghosh, A.
    Induction of heat shock response in V. cholerae. Microbiology, 141, 2101-2109, 1995.


  • Kalra, V.K.; Gupta, C.M.; Zachowski, A. & Pomorski, T.
    Lipid asymmetery of membrances. In: Manual on Membrane Lipids (ed. Prasad, R.), Chapter Vl, pp. 112-143, Springer, 1995.


  • Kaur, R.; Kumar, R. and Bachhawat, A.K.
    Selective recovery of DNA fragments from silica particles: Effect of A-T content and elution conditions. Nucleic Acids Res., 23, 4932-4933, 1995.


  • Owais, M.; Varshney, G.C.; Choudhury, A.; Chandra, S. and Gupta, C.M.
    Chloroquine encapsulated in malaria-infected erythrocyte specific antibody bearing liposomes effectively controls chloroquine resistant Plasmodium berghei infections in mice. Antimicrob. Agents Chemother., 39, 180-184, 1995.


  • Pajni, S.; Roy Chowdhury, N.; Ghosh, A.; Kar, S. and Ghosh, R.K.
    Characterization of phage 0139, a Vibrio cholerae 0139 temperature bacteriophage with cohesive DNA termini. FEMS Microbiol. Lett., 131, 69-74, 1995.


  • Patnaik, P.R.
    An evaluation of a neural network for the start-up of a continuous recombinant fermentation subject to disturbances. Biotechnol. Tech., 9, 691-696, 1995.


  • Patnaik, P.R.
    Sensitivity of recombinant fermentation with runaway plasmids: A structured analysis of the effect of dilution rate Chem. Engg. Communication, 131, 125-140, 1995.


  • Patnaik, P.R.
    Parametric sensitivity of streptokinase fermentation through model reduction by a semi-empirical approach. Hungarian J. Industrial Chem., 23, 47-53, 1995.


  • Patnaik, P.R.
    Analysis of bifuractions in continuous fermentation using recombinant microorganisms with delayed responses. Bioprocess Engg., 12, 199-203, 1995.


  • Patnaik, P.R.
    Uniqueness and multiplicity of steady states in monocyclic enzyme cascades: A graph theoretic analysis. J. Theoret. Biol., 177, 67-72, 1995.


  • Patnaik, P.R.
    Liquid emulsion membranes: Principles, problems and applications in fermentation processes. Biotechnol. Adv., 13, 175-208, 1995.


  • Patnaik, P.R.
    A heuristic approach to fed-batch optimisation of streptokinase fermentation. Bioprocess Engg., 13, 109-112, 1995.


  • Prasad, H.K.; Annapurna, P.S.; Majumdar, S. and Raje, Manoj.
    Identification of novel 30 kDa antigen of M. tuberculosis (MTB). J. Cellular Biochem., Supplement 19B, 1995.


  • Pruthy, Vikas and Cameotra, Swaranjit Singh.
    Rapid method for monitoring maximum biosurfactant production obtained by cretone precipitation. Biotechnol. Techniques, 9, 271-276, 1995.


  • Raghava, G.P.S.
    DNAOPT: A computer program to aid optimization of gel conditions of DNA gel Electrophoresis and SDS-PAGE. Biotechniques, 18, 276-82, 1995.


  • Gupta, R.; Sharma, P. and V.V.Vyas.
    Effect of growth environment on the stability of a recombinant shuttle plasmid, pCPPS-31, in E. coli. J. Biotechnol., 41, 29-37. 1995.


  • Saha, Bhaskar; Gobardhan Dass; Vohra, Harpreet; Ganguly, Nirmal K. and Mishra, G.C.
    Macrophage T-Cell interaction in experimental visceral Leishmaniasis 1. Selective regulation of co-stimulatory molecules on Leishmania infected macrophages and its implications in the suppression of cell mediated immunity. Eur. J. Immunol., 25, 2492-2498, 1995.


  • Suri, C.R.; Jain, P.K. and Mishra, G.C.
    Development of PZ crystal based microgravimetric immunoassay for determination of insulin concentration. J. Biotechnology, 39, 27-34, 1995.


  • Suri, C.R. and Mishra, G.C.
    A specific microgravimetric immunosensor for monitoring insulin concentration. Proc. of IEEE Engg. in Medicine Biology, 4, 9.2-9.4, 1995.


  • Vinay, D.S.; Raje, M.; Verma, R.K. and Mishra, G.C.
    Characterization of novel costimulatory molecules: A Protein of 38-42 kDa from B cell surface is concerned with T cell activation and differentation. J. Biol. Chem., 270, 23429-23436, 1995.


  • Jagath-Reddy, J.; Ganesan, K.; Savithri, H.S.; Datta, A. and Rao, N.A.
    cDNA cloning, overexpression in Escherichia coli, purification and characterization of sheep liver cytosolic serine hydroxymethyltransferase. Eur. J. Biochem., 230, 533-7, 1995.




PUBLICATIONS DURING 1994


  • Singh, P.; Ganesan, K.; Malathi, K.; Ghosh, D. and Datta, A.
    ACPR, a STE12 homologue from Candida albicans is a strong inducer of pseudohyphae in Saccharomyces cerevisiae haploids and diploids. Biochem. Biophys. Res. Commun., 205, 1079-85, 1994.


  • Malathi, K.; Ganesan, K. and Datta, A.
    Identification of a putative transcription factor in Candida albicans that acncomplement the mating defect of Saccharomyces cerevisiae ste12 mutants. J. Biol. Chem., 269, 22945-51, 1994.


  • Vijayakrishnan, L.; Kumar, V.; Agrewala, J.N.; Mishra, G.C. and Rao, K.V.
    Antigen-specific early primary humoral responses modulate immunodominance of B cell epitopes. J. Immunol., 153, 1613-25, 1994.


  • Raghava, G.P.S. and Sahni, G.
    GMAP: A multipurpose computer program to aid synthetic gene design, cassette mutagenesis and introduction of potential restriction sites into DNA sequences. Biotechniques, 16, 1116-1123, 1994.


  • Agarwal, A.; Kandpal, H.; Gupta, H.P.; Singh, N.B. and Gupta, C.M.
    Tuftsin bearing liposomes as rifampicin vehicles in treatment of tuberculosis in mice. Antimicrob. Agents Chemother., 38, 588-593, 1994.


  • Agrewala, J.N.; Vinay, D.S.; Joshi, A. and Mishra, G.C.
    A 150-kDa molecule of macrophages membrane stimulates interleukin-2 and interferon-gamma production and proliferation of ovalbumin-specific CD4+ T cells. Eur. J. Immunol., 24, 2092-2097, 1994.


  • Bachhawat, A.K.; Susham, I. and Jones, E.W.
    The yeast homolog of H58, a mouse gene essential for embryogenesis performs a role in the delivery of protein to the vacuole. Genes & Development, 8, 1379-1387, 1994.


  • Garrido, F.; Banerjee, U.C.; Chisti, Y. and Moo-Young, M.
    Disruption of a recombinant yeast for the release of B-galactosidase. Bioseparation, 4, 319-328, 1994.


  • Jain, R.K.; Dreisback, J.H. and Spain, J.C.
    Biodegradation of p-nitrophenol via 1,2,4-Benzenetriol by an Arthrobacter sp. Appl. Environ. Microbiol., 60, 3030-3032, 1994.


  • Joshi, Meenal and Dikshit, K.L.
    Oxygen dependent regulation of Vitreoscilla globin gene: Evidence for positive regulation by FNR. Biochem. Biophys. Res. Commun., 202, 535-542, 1994.


  • Majumdar, Sekhar and Gupta,Reena
    Effect of interleukin on the intracellular growth of M. Microti within J7774A.1 Cells. FEMS Microbiol.lett., 120, 329-334, 1994.


  • Modarress, K.J.; Cavanaugh, Alice H.; Chakraborti, Pradip K. and Simons, S.
    Stoney Jr. Metal oxyanion stabilization of the rat glucocorticoid receptor is independant of thiols. J. Biol. Chem., 269, 25621-25628, 1994.


  • Patnaik P.R.
    Micromixing and the steady state performance of bioreactors using recombinant bacteria-analysis through a reversed two-environment model. J. Chem. Technol. Biotechnol., 61, 337-342, 1994.


  • Patnaik P.R.
    Fractal characterization of the effect of noise on biological oscillations: The biosynthesis of ethanol. Biotech. Tech., 8, 419-424, 1994.


  • Patnaik, P.R.
    Dynamic sensitivity of a chemostat for a microbial reaction with substrate and product inhibition. Appl. Mathematical Modelling, 18, 620-627, 1994.


  • Patnaik, P.R.
    Effect of feed cycling on plasmid stabilization during continuous fermentation: The case of variable plasmid loss probability. Canadian J. Chemical Engg., 72, 929-934, 1994.


  • Patnaik, P.R.
    Does macromixing affect plasmid stability during continuous fermentation with recombinant bacteria ?. Indian Chemical Engineer, 36, 85-88, 1994.


  • Raghava, G.P.S.
    Recent excitement about artificial neural networks. Biobytes, 3, 4-5, 1994.


  • Raghava, G.P.S.; Goel, Apollina; Arvinder M. Singh and Varshney, G.C.
    A Simple Microassay for computing the hemolytic potency of drugs. Biotechniques, 17, 1148-1152, 1994.


  • Raghava,G.P.S.
    Improved estimation of DNA fragment lengths from gel electrophoresis. Biotechniques, 17, 100-104, 1994.


  • Raghava, G.P.S. and Agrewala, J.N.
    Method for determining the affinity of monoclonal antibody using non-competitive ELISA: A computer program. J. Immunoassay, 15, 115-128, 1994.


  • Saha, Bhaskar; Dass, Gobardhan; Vohra, Harpreet; Ganguly, Nirmal K. and Mishra, G.C.
    Macrophage-T Cell inteaction in experimental mycobacterial infection. Selective regulation of co-stimulatory molecules on mycobacterium infected macrophages and its implication in the suppression of cell-mediated immune response. Eur. J. Immunol., 24, 2618-2624, 1994.


  • Suri, C.R.; Raje Manoj and Mishra, G.C.
    Determination of immunoglobulin concentration by piezoelectric crystal immunobiosensor coated with protamine. Biosensors Bioelect., 9, 325-333, 1995.


  • Banerjee, U.C.
    Optimization of culture conditions for the production of rifamy-cin oxidase by Curvularia lunanta. World J. Microbiol. Biotech., 10, 462-464, 1994.


  • Banerjee, U.C.
    Growth and production of rifamycin oxidase by Curvularia lunata. Folia Microbiologica, 39, 49-52, 1994.


  • Vyas, V.V., Gupta, S. and Sharma, P.
    Stability of a recombinant shuttle plasmid in Bacillus subtilis and E.coli. Enz. Microb.Technol., 16, 240-246, 1994.


  • Sasikala C.H.; Ramana, C.H.V. and Prasad, G.S.
    Hydrogen production by mixed cultures. World J. Microbiol. Biotechnol., 10, 221-223. 1994.


  • Gupta, C.M.
    Liposomes in Drug Delivery: In: Tropical Diseases: Molecular Biology, 1994.


  • Control Strategies (Kumar, S.; Sen, A.K.; Dutta, G.P.and Sharma, R.N. eds.),
    229-235, Publications & Information Directorate (CSIR), New Delhi.




PUBLICATIONS DURING 1993


  • Agrewala, J.N.; Raghava, G.P.S. and Mishra, G.C.
    Measurement and computation of murine interleukine-4 and interferon-gamma by exploiting the unique abilities of these lymphokines to induce the secretion of IgG1 and IgG2a. J. Immunoassay, 14, 83-97, 1993.


  • Singh, Arvinder M.; Owais, M. and Varshney, G.C.
    Use of specific polyclonal antibodies for site specific drug targeting to malaria infected erythrocytes in vivo. Ind. J. Biochem. Biophys., 30, 411-413, 1993.


  • Banerjee, U.C.
    Characterization of soluble rifamycin oxidase from Curvularia lunata. Lett. Appl. Microbiol., 17, 1-3, 1993.


  • Banerjee, U.C.
    Studies of rifamycin oxidase immobilized on agar gel. J. General Applied Microbiol., 39, 251-255, 1993.


  • Banerjee, U.C.
    Evaluation of different biokinetic parameters of Curvularia lunata at different environmental conditions. Biotechnol. Tech., 7, 635-638, 1993.


  • Banerjee, U.C.
    Effect of stirrer speed, aeration rate and cell concentarion on Volumetric Oxygen Transfer Coefficient (Kca) in the cultivation of Curvularia lunata in a batch reactor. Biotechnol. Tech.,7, 733-738, 1993.


  • Banerjee, U.C.
    Transformation of rifamycin B with growing and resting cells of Curvularia lunata. Enzyme Microbial.Technol., 15, 1037-1041, 1993.


  • Banerjee, U.C.
    Transformation of rifamycin B with soluble rifamycin oxidase from Curvularia lunata. J. Biotechnol., 29, 137-143, 1993.


  • Banerjee, U.C.
    Effect of gulcose and carboxymethyl cellulose on growth and rifamycin oxidase production by Curvularia lunata. Current Microbiol., 26, 261-265, 1993.


  • Banerjee, U.C.; Chisti, Y. and Moo-Young, M.
    Spectrophotometric determination of Mycelial biomass. Biotechnol. Tech., 7, 313-316, 1993.


  • Banerjee, U.C. and Patnaik, P.R.
    A comparative study of the deactvation of
    b-glucosidase from Curvularia lunata immobilised on three matrices. Indian Chem. Engg., 35, 37-39, 1993.


  • Basu, R.; Ghosh, A.N.; Dasgupta, S. and Ghosh, A.
    Biophysical characterization of Vibrio EL Tor typing phage e5. FEMS Microb.Lett., 106, 9-15, 1993.


  • Das, B.; Ghosh, R.K.; Sharma, C.; Bhasin, N. & Ghosh, A.
    Tandem repeats of cholera toxin gene in Vibrio cholerae 0139. Lancet, 342, 1173-1174, 1993.


  • Ghei, S.K.; Agrewala, J.N.; Sengupta, U. and Sudhakar, K.S.
    Group specific component in Erythema Nodosum Leprosum. Ind. J. Lepr. 65, 323-325, 1993.


  • Gudi, T. and Gupta, C.M.
    HSP 70-like protein in Rhesus rrythrocyte cytosol and its interaction with membrane skeleton under heat and pathologic stress. J. Biol. Chem., 268, 21344-21350, 1993.


  • Gupta, C.M.
    Phospholipids in disease. In: Phospholipids Handbook (G. Cevc, Ed.), 895-905, Marcel Dekkker, New York, 1993.


  • Naresh Kumar.
    Recent developments in biotechnology: An Indian perspective. J. Sci. Industrial Res., 52, 308-312, 1993.


  • Naresh Kumar.
    The Human Genome Project: Impact of patenting of human gene on further development of knowledge of human genome. J. Sci. Industrial Res., 52, 319-322, 1993.


  • Owais, M.; Ahmed, I.; Krishnakumar, B.; Jain, R.K.; Bachhawat, A.K. and Gupta, C.M.
    Tuftsin-bearing liposomes as drug vehicles in the treatment of experimental aspergillosis. FEBS. Lett., 326, 56-58, 1993.


  • Patnaik, P.R.
    A simple analytical solution of a model for probabilistic plasmid loss and its implications in continuous cultures. Biotechnol. Tech., 7, 357-360, 1993.


  • Patnaik, P.R.
    Dependence of process variables on fermentation parameters during start-up of a continuous reactor with recombinant microorganisms. Biotech. Tech., 7, 137-142, 1993.


  • Patnaik, P.R.
    The effect of macromixing on oscillatory behaviour during recombinant fermentation in a continuous stirred tank reactor. Chem. Engg. Commun., 125, 155-169, 1993.


  • Patnaik, P.R.
    Steady state multiplicity in enzyme deactivation-application of a simple graph theoretic method. Enzyme Microb.Tech., 15, 162-166, 1993.


  • Patnaik, P.R.
    Some qualitative features of homogeneous stability and turning instability in two species completion in a batch fermenter. Ind. J. Technol., 31, 692-696, 1993.




PUBLICATIONS DURING 1992


  • Bakshi, A.; Gupta J.K. and Patnaik P.R.
    Pullulanase and
    a-amylase production by a Bacillus cereus isolate. Lett. Appl. Microbiol.,14, 210-213, 1992.


  • Bakshi, A.; Patnaik, P.R. and Gupta, J.K.
    Thermostable pullulanase from a mesophilic isolate Bacillus cereus strain and its mutant UV7.4. Biotech. Lett., 14, 689-694, 1992.


  • Banerjee, U.C. and Chakrabarti, S.
    Production and properties of carboxymethylcellulase (Endo-1, 4-B-glucanase) from Curvularia lunata. World J. Microbiol. 8, 423-424, 1992.


  • Banerjee, U.C.
    Immobilized B-glucosidase from Curvularia lunata. Folia Microbiol., 37, 250-256, 1992.


  • Banerjee, U.C. and Srivastava, J.P.
    Effect of pH and glucose concentration on the production of rifamycin oxidase by Curvularia lunata in a batch reactor. J. Biotech., 28, 229-236, 1992.


  • Banerjee, U.C.; Saxena, B. and Chisti,Y.
    Biotransformations of rifamycins: Process possibilities. Biotechnol. Advances, 10, 577-595, 1992.


  • Mukhopadhyay, G. and Ghosh, A.
    Purification and properties of DNA gyrase from V. cholerae. Biochem. J., 280, 797-800, 1992.


  • Patnaik, P.R.
    A geometric interpretation of the feasibility of reactive extraction/reextraction of penicillin G. J. Biotechnol., 23, 95-102, 1992.


  • Patnaik, P.R.
    Sensitivity analysis of fed-batch fermentation for the production of penicillin G. Biotech. Tech., 6, 9-14, 1992.


  • Raghava, G.P.S.; Joshi, A.K. and Agrewala, J.N.
    Calculation of antibody and antigen concentrations from ELISA data using graphical method. J. Immunol. Methods, 153, 263-264, 1992.


  • Vohra, R.M. and Vyas, V.V.
    Rifamycin oxidase immobilized on nylon fibers. Biotech. Tech., 6, 61-64, 1992.


  • Vohra, R.M.
    Novel assay for screening rifamycin B producing mutants. Appl. Environ. Microbiol., 58, 403-404, 1992.


  • Sudershan R.V.; Prasad, G.S.; Krishna, T.P. and Bhat, R.V.
    Field level evaluation of aflatoxin detection kit. J. Food Protection, 55, 392-394. 1992.


  • Vyas, V.V. and Patnaik, P.R.
    A reaction zone approach to analyse reactive extraction with liquid emulsion membranes. ANABIOTEC 92, Noordwijkerhont, Netherlands, 1993.




PUBLICATIONS DURING 1991




  • Banerjee, U.C. and Vohra, R.M.
    Production of Laccase by Curvularia sp. Folia Microbiologica, 36, 343-346, 1991.


  • Basu, S.K.
    Interfacing biological, physiological and engineering sciences-IMTECH. Curr. Sci., 60, 524-528, 1991.


  • Majumdar, S. and Basu, S.K.
    Killing of intracellular Mycobacterium tuberculosis by receptor mediated drug delivery. Antimicrob. Agents Chemother., 35, 135-140, 1991.


  • Jain, R.K.; Bayly, R.C. and Skurray R.A.
    Specific deletion of a large segment of pRA500: A 3, 5-xylenal degradative plasmid. Letters Appl. Microbiol., 12, 216-220. 1991.




PUBLICATIONS DURING 1990




  • Banerjee, U.C.
    Production of
    b-glucosidase (cellobiase) by Curvularia sp. Lett. Appl. Microbiol., 10, 197-199, 1990.


  • Bansal, M.R.; Kaushal, N. and Banerjee, U.C.
    Effects of oral lead acetate administration on the mouse brain. J. Trace Elements Exp. Med., 3, 235-246, 1990.


  • Basu, S.K.
    Receptor mediated endocytosis of macromolecular conjugates in selective drug delivery. Biochem. Pharmacol., 40, 1941-1946, 1990.


  • Jain, R.K.
    Copper-resistant microorganisms and their role in the environment. World J. Microbiol. Biotechnol., 6, 356-365, 1990.


  • Mondal, A.K. and Roy, T.K.
    Temperature dependence of transcriptional activity of yeast 3-phosphoglycerokinase promoter in Escherichia coli. Biochem. Biophys. Res. Commun., 170, 1-9, 1990.


  • Jolly, R.S.; Gregory, Luedtke; Derek Sheehan and Tom Livinghouse
    Novel cyclization reactions on transition metal templates. The catalysis of intramolecular [4+2] cycloadditions by low-valent rhodium complexes. J. Am. Chem. Soc., 112, 4965 – 4966. 1990.




PUBLICATIONS DURING 1989


  • Chaudhuri, G.; Mukhopadhyay, A. and Basu, S.K.
    Selective delivery of drugs to macrophages through acetyl low density lipoproteins: An efficient chemotherapeutic approach against leishmaniasis. Biochem. Pharmacol., 38, 2995-3002, 1989.


  • Mukhopadhyay, A.; Chaudhuri, G.; Arora, S.K.; Sehgal, S. and Basu, S.K.
    Receptor mediated drug delivery to macrophages in chemotherapy of leishmaniasis. Science, 244, 705-707, 1989.


  • Vohra, R.M.; Banerjee, U.C.; Das, S. and Dube, S.
    Microbial Transformation of Rifamycin B: A new extracellular oxidase from Curvularia lunata. Biotechnol. Lett., 11, 851-854, 1989.


  • Vohra, R.M. and Dube, S.
    Identification and quantitation of rifamycin by reverse phase high performance liquid chromatography. J. Chromatog., 477, 463-466, 1989.


  • Roy, A. and Roy, T.K.
    A database management system for recombinant DNA clones and hosts for use in IBM personal computers. Comput. Biol. Med., 5, 321-323, 1989.


  • Patnaik, P.R.
    Transient analysis of a batch reactor with temperature fluctuations. React. Kinet. Catal. Lett., 39, 305, 1989.


  • Patnaik, P.R.
    Oscillations induced by inflow noise for sequential reactions in a CSIR. React. Kinet. Catal. Lett., 40, 381, 1989.




PUBLICATIONS DURING 1988




  • Ananthapadmanaban, D. and Subramanian, C.V.
    Paraeutypa, a new genus of the Diatrypaceae. Trans. Br. Mycol. Soc., 90, 337-330, 1988.


  • Ananthapadmanaban, D.
    Cyptascoma, a new genus of the valsaceae. Trans. Br. Mycol. Soc., 90, 479-482, 1988.


  • Majumdar, S.; Mukhopadhay, Nishit. K.; Ghosh, S.K. and Bose Susil K.
    Genetic analysis of the Mycobacillin biosynthetic pathway in Bicillus B3. J. Gen. Microbiol., 134, 1147-1153,1988.




PUBLICATIONS DURING 1987


  • Arora, D.S. and Sandhu, D.K.
    Decomposition of angiospermic wood sawdust and laccase production by two Pleurotus species. J. Basic Microbiol., 27, 179-184, 1987.


  • Bhattacharya, B.; Mondal, C.; Basu, S.K. and Sarkar, P.K.
    Regulation of
    a - and b-tubulin mRNAs in rat brain during synaptogenesis. Molecular Brain Research, 2, 159-162, 1987.


  • Jain, R.K.; Sayler, G.S.; Wilson, J.T.; Houstow, L. and Pacia, D.
    Maintenance and stability of genotypes in groundwater aquifer material. Appl.. Environ. Microbiol., 53, 996-1002, 1987.


  • Jain, R.K. and Sayler, G.S.
    Problems and potential for in situ treatment of environmental pollutants by engineered microorganisms. Microbiological Sciences, 4, 59-63, 1987.


  • Blackburn, J.W.; Jain, R.K. and Sayler, G.S.
    The molecular microbial ecology of a naphthalene degrading genotype in activated sludge. Environmental Science Technology, 21, 884-890, 1987.


  • Jayasheela, M.; Sharma, V.K.; Mondal, A. and Saxena, S.N.
    Plasmid mediated enterotoxigenicity in Salmonella strains isolated from patients of gastroenteritis. Indian J. Med. Res., 85, 496-499, 1987.




PUBLICATIONS DURING 1986


  • Chakrabarti, T.
    Molecular biological techniques for taxonomic studies. In “Recent topics in experimental and conceptual plant pathology” (ed.) R.S. Singh. Oxford-IBH Publishing Co., New Delhi, 1986.




PUBLICATIONS DURING 1985


  • Nil




PUBLICATIONS DURING 1984


  • Roy, P.K.; Roy, U. and Dube, D.K.
    Immobilised cellulolytic and hemicellulolytic enzymes from M. phaseolina. J. Chem. Tech. Biotechnol., 34 B,165-170, 1984.


  • Chen, Y.M.; Chakrabarti, T. and Lin, E.C.
    Constitutive activation of L-fucose genes by an unlinked mutation in Escherichia coli. J. Bacteriol., 159, 725-9, 1984.

 
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