gototopgototop

Main Menu

PUBLICATIONS DURING 2010

Sharma,P.; Gandhi, S.; Chopra, A. and Suri, C.R.
Fluoroimmunoassay based on suppression of fluorescence self-quenching for ultra sensitive detection of herbicide diuron. Anal. Chim. Acta., 676, 87-92, 2010 

 

Kumar, N.; Venugopalan, P. and Kishore, R.
Crystallographically observed folded topology of an unsubstituted gamma-aminobutyric acid incorporated in a model peptide: importance of a C—H….O interaction. Biopolymers, 93, 927-931, 2010.

 

Kumar, N. and Kishore, R.
Determination of an unusual secondary structural element in the immunostimulating tetrapeptide rigin in aqueous environments: insights via MD simulations, (1)H NMR and CD spectroscopic studies. J. Pept. Sci., 16, 456-464, 2010.

 

Pashov, A.D.;  Monzavi-Karbassi, B. ;Raghava, G.P.S.; and Kieber-Emmons, T.
Bridging Innate and Adaptive Anti-Tumor Immunity Targeting Glycans. J. Biomed. Biotechnol., 354068, 2010.

 

Kukreti, H.;  Mittal, V.; Chaudhary, A.; Rautela, R.S.; Kumar, M.; Chauhan, S.; Bhat, S.; Chhabra, M.; Bhattacharya, D.; Pasha, S.T.; Kumar, D.; Gomber, S.; Lal, S. and  Rai, A. Continued persistence of a single genotype of dengue virus type-3 (DENV-3) in Delhi, India since its re-emergence over the last decade. J. Microbiol. Immunol. Infect., 43, 53-61, 2010.

Rajamohan, G.; Srinivasan, V.B. and Gebreyes, W.A.
Molecular and functional characterization of a novel efflux pump AmvA, in mediating antimicrobial and disinfectant resistance in Acinetobacter baumannii. J. Antimicrob. Chemother., 65, 1919-1925, 2010.

Rajamohan, G.; Srinivasan, V.B. and Gebreyes, W.A.
Novel role of Acinetobacter baumannii RND efflux transporters in mediating decreased susceptibility to biocides. J. Antimicrob. Chemother., 65, 228-232., 2010.

Daniel, H.M. and Prasad, G.S.
The role of culture collections as an interface between provides and users: the examples of yeasts. Resarch in Microbial., 161, 488-496, 2010.

Pinnanka, A.K.; Srinivas, T. N. R.; Pavankumar, P.; Madhu, S. and Shivaji, S.  Nitritalea halalkaliphila gen. nov., sp. nov., an alkaliphilic bacterium of the family ‘Cyclobacteriaceae’, phylum Bacteroidetes. Int. J. Sys. Evol. Microbiol., 60, 2320–2325, 2010.

Pinnanka, A.K.; Srinivas, T. N. R.; Madhu, S.; Manorama, R. and Shivaji, S. Indibacter alkaliphilus gen. nov., sp. nov., an alkaliphilic bacterium isolated from a haloalkaline lake. Int. J. Sys. Evol. Microbiol., 60, 721-726, 2010.

Kumar, P.; Singh, M.; Gautam, R. and Karthikeyan, S.
Potential anti-bacterial drug target: Structural characterization of 3,4-dihydroxy-2-butanone-4-phosphate synthase from Salmonella typhimurium LT2. Protein. , 78, 3292-3303, 2010.

Daniel, H.M. and Prasad, G.S.
The role of culture collections as interface between providers and users: the example of yeasts. Research in Microbiology 161, 488-496, 2010. 

Pathak, A.; Goyal, R.; Sinha, A.  and Sarkar, D.
Domain structure of virulence-associated response regulator phop of Mycobacterium tuberculosis: role of the linker region on regulator-promoter interaction(S). J. Biol. Chem. 285, 34309-34318, 1010.

Dar, H.H. and  Chakraborti, P.K.
Intermolecular phosphotransfer is crucial for efficient catalytic activity of Nucleoside diphosphate kinase. Biochem. J., 430, 539-549, 2010.

Ansari, H.R. and  Raghava, G.P.

Identification of conformational B-cell Epitopes in an antigen from its primary sequence. Immunome Res., 6:6, 2010

Panwar, B. and  Raghava, G.P.

Prediction and classification of aminoacyl tRNA synthetases using PROSITE domains. BMC Genomics., 11:507, 2010.

Fatima, U.; Sharma, S. and  Guptasarma, P.
Structures of Differently Aggregated and Precipitated forms of gammaB Crystallin: An FTIR Spectroscopic and EM Study. Protein Pept. Lett.,   17, 1155-1162, 2010.

Sharma, P.; Chopra, A.; Cameotra, S.S. and Suri, C.R.
Efficient biotransformation of herbicide diuron by bacterial strain Micrococcus sp.PS-1. Biodegradation., 21, 979-987, 2010.

Ranjan, R.K. and Kammara, Rajagopal
Efficient ligation and cloning of DNA fragments with two base pair Overhangs. Anal. Biochem. 402, 91-92, 2010.

Biswas, D.; Datt, M.;  Ganesan, K.; and Mondal, A.K.
Cloning and characterization of thermotolerant xylitol dehydrogenases from yeast Pichia angusta. App. Microbiol. Biotechnol., 88, 1311-1120, 2010. 

Ruckmani, A. and Chakrabarti, T.
Analysis of Bacterial Community Composition of a Spring Water from the Western Ghats, India Using Culture Dependent and Molecular Approaches. Curr. Microbiol., 62, 7-15, 2010.


Krishnamurthi, S.; Ruckmani, A.; Pukall, R. and Chakrabarti, T.
Psychrobacillus gen. nov.andproposalforreclassificationof Bacillus insolitus Larkin &Stokes,1967, B. psychrotolerans Abd-El Rahmanetal.,2002and B. psychrodurans Abd-El Rahmanetal.,2002as Psychrobacillus insolitus comb. nov., Psychrobacillus psychrotolerans comb. nov.and Psychrobacillus psychrodurans comb. nov., Syst. Appl. Microbiol., 33, 367-373, 2010.
Bajaj, A.; Pathak, A.; Mudiam, M.; Mayilraj, S. and Manickam, N.
Isolation and characterization of a Pseudomonas sp. strain IITR01 capable of degrading α-endosulfan and endosulfan sulfate. J. App. Microbiol., 109, 2135-2143, 2010.

Manickam, N.; Pathak, A.; Saini, H.; Mayilraj,S. and Rishi, S.
Metabolic profiles and phylogenetic diversity of microbial communities from chlorinated pesticides contaminated sites of different geographical habitats of India. J.  App. Microbiol., 109, 1458-1468, 2010.

Bhasin, S.; Cameotra, S.S. and. Modi, H.A
Actinomycetal diversity of western region of Madhya Pradesh. J. Adv. Developmental Res. 1, 132-138, 2010.

Joshi, K.K. and Sahni, G.
Molecular cloning, expression, purification and characterization of truncated
forms of human plasminogen in Pichia pastoris expression system. Process Biochem., 45, 1251-1260, 2010.

Yadav,S. and  Sahni, G.
Probing the primary structural determinants of streptokinase inter-domain linkers by site-specific substitution and deletion mutagenesis. Biochim Biophys Acta., 1804, 1730-1737, 2010.

Mishra, N.K.; Agarwal, S. and Raghava, G.P.S.
Prediction of cytochrome P450 isoform responsible for metabolizing a drug molecule. BMC Pharmacol.,10: 8, 2010.

Chauhan, J.S.  Mishra, N.K. and Raghava, G.P.S.
Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information. BMC Bioinformatics, 11: 301, 2010.

LaButti, K.; Mayilraj, S.; Lapidus, A. et al.
Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207T). Standards in Genomic Sciences, 3, 85-92, 2010. 

Pal, K.; Kumar, S.; Sharma, S.; Garg, S.K.; Mohammad, S.Alam; Xu, H.E.; Agrawal, P. and Swaminathan, K.
Crystal structure of full length mycobacterium tuberculosis H37rv glycogen branching enzyme: insights of n-terminal β-Sandwich in substrate specificity and enzymatic activity. J. Biol. Chem., 285, 20897-20903, 2010.

Wangoo, N.; Kaushal, J.; Bhasin, K.K. and Suri, C.R.
Zeta potential based colorimetric immunoassay for the direct detection of diabetic marker HbA1c using gold nanoprobes. Chem. Comm., 46, 5755-5757, 2010.

Singh, V.; Gowthaman. U.; Jain, S.; Parihar, P. Banaskar, S. Gupta, P. Gupta, U.D. and Agrewala, J.N.
Co-administration of IL-7 and IL-15 with BCG amount enduring T cell memory response against M. tuberculosis. J. Infect. Dis., 202, 480-489, 2010.

Gowthaman, U.; Sathibabu, C. and  Agrewala, J.N.
T cell help to B cells in germinal centers: putting the jigsaw together. Int. Rev.  Immunol., 29, 403-420, 2010.

 

Moon, L.; Pal, M.; Kasetti, Y.; Bharatam, P. and Jolly, R.S.
Chiral Solvating Agents for Cyanohydrins and Carboxylic acids. J.Org. Chem., 75,  5487-5498, 2010.

Dave, S.; Dkhar, H.K.; Singh, M.P.; Gupta, G., Chandra, V.; Mahajan, S. and Gupta P.
Hexafluoroisopropanol induced helix-sheet transition of stem bromelain: Correlation to function. Int. J. Biochem. Cell. Biol., 42, 938-947, 2010.

Luthra-Guptasarma, M.,and Guptasarma, P.
Metal-catalyzed proteolysis, conformational antigenicity, photosensitized oxidation and electrical dysfunction explain the pathogenicity of protein aggregates. Medical Hypotheses, 75, 294-298, 2010.

Ansari, H. R. and Raghava, G. P. S.
Identification of NAD interacting residues in proteins.  BMC Bioinformatics, 11:160, 2010.

Das, A.; Pathak, A.; Sinha, A.; Datt, M.; Singh, B.; Karthikeyan, S and Sarkar, D. A single amino acid substitution in the C terminus of PhoP determines DNA-binding specificity of the virulence-associated response regulator from Mycobacterium tuberculosis. J. Mol. Biol., 398, 647-656, 2010.

 

Ghosh, A.; Khurana, M.; Chauhan, A.; Takeo, M.; Chakraborti, A.K. and Jain, R.K.
Degradation of 4-Nitrophenol, 2-Chloro-4-nitrophenol, and 2,4-Dinitrophenol by Rhodococcus imtechensis Strain RKJ300. Environ. Sci. Technol., 44, 1069-1077, 2010.

Gahlot, S.; Khan, M.A.; Rishi, L.; and Majumdar, S.
Pentoxifylline augments TRAIL/Apo2L mediated apoptosis in Cutaneous T cell lymphoma (HuT-78 and MyLa) by modulating the expression of antiapoptotic proteins and death receptors. Biochem. Pharmacol., 77, 30-45, 2010.

Kumar, A. and Bachhawat, A.K
OXP1/YKL215c encodes an ATP-dependant 5-oxoprolinase in Saccharomyces cerevisiae: Functional Characterization, Domain structure and Identification of actin–like ATP-binding motifs in eukaryotic 5-oxoprolinases. FEMS Yeast Res., 10, 394-401, 2010.

 

Anand, A.; Duk, B.T.; Singh, S.; Akbas, M.Y.; Webster, D.A.; Stark, B.C. and  Dikshit, K.L.
Redox mediated interactions of Vitreoscilla hemoglobin [VHb] with OxyR : novel regulation of VHb biosynthesis under oxidative stress. Biochem. J., 426, 271-280, 2010.

Kapur, M.; Bhatia, R.; Pandey, G.; Pandey, J.; Paul, D. and Jain R.K.
A case study for assessment of microbial community dynamics in genetically modified Bt cotton crop fields. Curr. Microbiol., 61, 118-124, 2010.

 

Mishra, N.K.; Agarwal, S. and Raghava, G.P.S.
Prediction of cytochrome P450 isoform responsible for metabolizing a drug molecule. BMC Pharmacol.,10: 8, 2010.

 

Chauhan, J.S.  Mishra, N.K. and Raghava, G.P.S.
Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information. BMC Bioinformatics, 11: 301, 2010.

LaButti, K.; Mayilraj, S.; Lapidus, A. et al.
Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207T). Standards in Genomic Sciences, 3, 85-92, 2010.

Abd, H.; Soni, P.V.; Sami, S.M.; Saeed, A.; Raychaudhuri, S. and Sandström, G.
Interaction between Vibrio mimicus and Acanthamoeba castellanii. Environ. Microbiol. Reports, 2, 166-171, 2010.

Dhanjal, S. and Cameotra, S.S.
Aerobic biogenesis of selenium nanospheres by Bacillus cereus isolated from coalmine soil. Microbial Cell Factories, 9:52, 2010. 

Dave, S.; Mahajan, S.; Chandra, V.; Dkhar, H.K.; Sambhavi and Gupta, P.
Specific molten globule conformation of stem bromelain at alkaline pH. Arch. Biochem. Biophy., 499, 26-31, 2010. 

Haldar, A.K., Yadav, V.; Singhal, E.; Bisht, K.K.; Singh, A.; Bhaumik, S.; Basu, R.; Sen, Pradip* and Roy, Syamal
Leishmania donovani isolates with antimony-resistant but not -sensitive phenotype inhibit sodium antimony Gluconate-Induced Dendritic cell activation. PLoS Pathogens, 6(5), 1-21, e1000907, 2010.

Pratibha, J., Amandeep, K., Shenoy, B.D. and Bhat, D.J.
Caliciopsis indica sp. nov. from India. Mycosphere, 1, 65–72, 2010.

 

Dave, S.; Dkhar, H.K.; Singh, M.P.; Gupta, G.; Chandra, V.; Mahajan, S. And Gupta, P.
Hexafluoroisopropanol-induced helix-sheet transition of stem bromelain: Correlation to function. Int. J. Biochem. Cell Biol., 42, 938-947, 2010. 

Meena, Netrapal; Kaur, Harsimran and Mondal, A. K.
Interactions among HAMP repeats act as an osmosensing molecular switch in a group III hybrid histidine kinase. J. Biol Chem 2010, 285,12121–12132.

Mathur, C.; Prakash, R.;  Ali, A.;  Kaur, J.; Cameotra, S.S.  and N. Prakash, T.
Emulsification and Transesterification of Oil by a Soilborne Fungus, Syncephalastrum racemosum.. Defence Science Journal
2010, 60, 251-254.

 

Kapoor, D.; Singh, B.; Karthikeyan, S. and Guptasarma, P.
A functional comparison of the TET aminopeptidases of P. furiosus and B. subtilis with a protein-engineered variant recombining the former's structure with the latter's active site. Enzyme Microb. Tech. 46, 1-8, 2010

 

Kumar, A. and Bachhawat, A.K.  
Is a futile cycle, formed between two ATP-dependant γ-glutamyl cycle enzymes,
γ-glutamyl cysteine synthetase and 5-oxoprolinase, the cause of cellular ATP depletion seen in nephrotic cystinosis? J. Biosciences ,35, 21-25, 2010.

 

Garg, A., Tewari, R. and Raghava, G. P. S.
KiDoQ: using docking based energy scores to develop ligand based model for predicting antibacterials.  BMC Bioinformatics, 11:125, 2010.

 

Singla, D., Sharma, A., Kaur, J., Panwar, B. and Raghava, G. P. S.
BIAdb: a curated database of benzylisoquinoline alkaloids. BMC Pharmacology, 10, 4, 2010.

 

Lata, S., Mishra, N.K. and Raghava, G. P. S.
AntiBP2: Improved version of antibacterial peptide prediction. BMC Bioinformatics, 11:S19, 2010.

 

Mishra, N.K. and Raghava, G. P. S.
Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information. BMC Bioinformatics, 11:S48, 2010.

 

Garg, A., Tewari, R. and Raghava, G. P. S.
Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of Mycobacterium tuberculosis. BMC Bioinformatics, 11:S53, 2010.

 

Chaudhary N, Mahajan L, Madan T, Kumar A, Raghava, G. P. S., Katti SB, Haq W and Sarma PU.
Prophylactic and Therapeutic Potential of Asp f1 Epitopes in Naiive and Sensitized BALB/c Mice. Immune Netw. 9, 179-91, 2010.

 

Tripathi, R.; Singh, N.S.; Dureja, C.; Haldar, S.; Mondal, A.K. and Raychaudhuri, S.
VopF, a type III effector protein from a non-O1, non-O139 V. cholerae strain demonstrates toxicity in a Saccharomyces cerevisiae model. J. Med. Microbiol., 59, 17-24, 2010.


Ashish; Solanki, A.K.; Boone, C.D. and Krueger, J.K.
Global structure of HIV-1 neutralizing antibody IgG1 b12 is asymmetric. Biochem. Biophy.Res. Comm., 391, 947-951, 2010.


Hadi Abd; Valeru, S.P.; Sami, S.M.; Saeed, A. and Raychaudhuri, S.
Interaction between Vibrio mimicus and Acanthamoeba castellanii (p ) Gunnar Sandström. Environ Microbiol Reports, (Online: DOI: 10.1111/j.1758-2229.2009.00129.x)

 

Ansari, H.R.; Flower, D.R. and Raghava, G.P.S.
AntigenDB: an immunoinformatics database of pathogen antigens. Nucleic Acids Res., 38, D847-853, 2010.


Cameotra, S.S.
Biosurfactant-enhanced bioremediation of hydrophobic pollutants. PAC, IUPAC 82(1): 97-116,  2010.

 
Sengar, K.P.S.
Building a Digital Institutional Repository Service (DIRS): IMTECH (CSIR) Initiative. Proceedings of the 3rd International Conference on Digital Libraries (ICDL)-2010. Vol.1, Page no. 600-605.
 
Cameotra,S.S.
Geographical Indications. CSIR NEWS Progress, Promise and Prospects,60, 5-6, 2010
 
Cameotra, Swaranjit Singh
Importance and Role of a Service Culture Collection. WFCC July 2010.
 
Sengar, K.P.S.
Towards the Building of Digital Institutional Repositories of CSIR laboratories:
an Overview, Proceedings of 27th Annual Convention of the Society for
Information Science (SIS-2010) & Conference on Open Access-Gateway to Open
Innovation, IICB-BI, Kolkata, 24-26 Nov., 2010.
 
Shivaji,S. and Prasad, G.S. 2009. Antarctic Yeasts: Biodiversity and Potential Applications. In: Yeast Biotechnology: Diversity and Applications.
Satyanarayana, T.; Kunze, Gotthard (Eds.). Springer Publishers, Amsterdam, The Netherlands. pp 3-18.
 
This site is best viewed in Mozilla Firefox, Internet Explorer 8 and above at screen resolution of 1024 x 768 and above.