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PUBLICATIONS DURING 2015
 
 
 
Kumar, R.; Chaudhary, K.; Sharma, M.; Nagpal, G.; Chauhan, J.S.; Singh, S.; Gautam, A. and Raghava, G.P.S.
AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides.  Nucleic Acids Res., 43, D956-62, 2015. (IF 8.808 )

Tyagi, A.; Tuknait, A.; Anand, P.; Gupta, S.; Sharma, M.; Mathur, D.; Joshi, A.; Singh, S.; Gautam, A. and Raghava, G.P.S. 
CancerPPD: a database of anticancer peptides and proteins. Nucleic Acids Res., 43, D837-43, 2015. (IF 8.808)

Singh, N. and Kumar, A. 
Virulence factor sSenX3 is the oxygen-controlled
replication switch of Mycobacterium tuberculosis. Antioxidants and Redox Signalling., 22, 603-613, 2015. (IF 7.667)

Chodisetti, S.B.; Gowthaman, U.; Rai, P.K.; Vidyarthi, A.; Khan, N. and Agrewala, J.N.
Triggering Through Toll-like Receptor 2 Limits Chronically Stimulated T-helper Type 1 Cells From Undergoing Exhaustion. J. Infect. Dis. 211, 486-496, 2015. (IF 5.778)

Kaur, S.; Srivastava, G.; Sharma, R.N. and Jolly, R.S.
immunosuppressive agent Caerulomycin A exerts its effect by depleting cellular iron content. Br. J. Pharmacol. 172(9), 2286-2299, 2015. (IF 4.99)

Srivastava, G.; Pal, M.; Kaur, S. and Jolly, R.S.
A highly efficient designer cell for enantioselective reduction of ketones. Catal. Sci. Technol., 5, 105-108, 2015. (IF 4.76).

Dkhar, H.K.; Gopalsamy, A.; Loharch, S.; Kaur, A.; Bhutani, I.; Saminathan, K.; Bhagyaraj, E.; Chandra, V.; Swaminathan, K.; Agrawal, P.; Parkesh, R. and Gupta, P.
Discovery of Mycobacterium tuberculosis α-1,4-glucan branching enzyme (GlgB) inhibitors by structure and ligand based virtual screening. J. Biol. Chem., 290(1), 76-89, 2015. (IF 4.60)

Nanduri, R.; Mahajan, S.; Bhagyaraj, E.; Sethi, K.; Kalra, R.; Chandra, V. and Gupta, P.
The Active Form of Vitamin D Transcriptionally Represses Smad7 Signaling and Activates Extracellular Signal-regulated Kinase (ERK) to Inhibit the Differentiation of a Inflammatory T Helper Cell Subset and Suppress Experimental Autoimmune Encephalomyelitis. J. Biol. Chem.,  290, 12222-12236, 2015. (IF 4.60)

Mahajan S, Saini A, Chandra V, Nanduri R, Kalra R, Bhagyaraj E, Khatri N, Gupta P.
Nuclear receptor Nr4a2 promotes alternative polarization of macrophages and confer protection in sepsis. J Biol Chem.  (In Press) (IF 4.60)

Islam, Z.; Kumar, A.; Singh, S.; Salmon, L. and Karthikeyan, S.
Structural Basis for Competitive Inhibition of 3,4-Dihydroxy-2-Butanone-4-Phosphate Synthase from Vibrio cholera. J. Biol Chem., 290(18), 11293-11308, 2015 (IF 4.60)

Agrawal, Y.; Khatri, I.; Subramanian, S. and Shenoy, B.D.
Genome sequence, comparative analysis and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii. Genome Biol. Evol. 7, 916-930, 2015.  (IF 4.532)

Bhatia, R.; Gautam, A.; Gautam, S.K.; Mehta, D.; Kumar, V.; Raghava, G.P.S. and  Varshney, G.C.
Assessment of SYBR Green I Dye-Based fluorescence Assay for Screening Antimalarial Activity of Cationic Peptides and DNA Intercalating Agents. Antimicrob Agents Chemother. 59, 2886-2889, 2015. (IF 4.451)

Das, S.; Ghosh, A.K.; Singh, S.; Saha, B.; Ashish and Das, P.
UnmethylatedCpG-motifs in the L. donovani DNA regulate TLR9-dependent delay of programmed cell death in macrophages J Leuk Biol., 97(2), 363-378, 2015. (IF 4.304)

Gautam, A.; Sharma, M.; Vir, P.; Chaudhary, K.; Kapoor, P.; Kumar, R.; Nath, S.K. and Raghava, G.P.S. 
Identification and characterization of novel protein derived arginine-rich cell penetrating peptides. Eur. J. Pharm. Biopharm., 89, 93-106., 2015. (IF 4.245)

Dixit, P.;  Mehta, A.; Gahlawat, G.; Prasad, G.S. and Choudhury, A.R.
Understanding the effect of interaction among aeration, agitation and impeller positions on mass transfer during pullulan fermentation by  AUREOBASIDIUM PULLULANS.  RSC ADVANCES, 5, 38984-38994, 2015.

Singh, P.K.; Solanki, V.; Sharma, S.; Thakur, K.G.; Krishnan, B. and Korpole, S.
The intramolecular disulfide-stapled structure of laterosporulin, a class IIdbacteriocin, conceals a human defensin-like structural module. FEBS J., 282(2), 203-214, 2015. (IF 3.986)

Mushtaq, K.; Sheikh, J.A.;  Md. Amir; Khan, N.; Singh, B. and  Agrewala, J.N.
 Rv2031c of Mycobacterium tuberculosis: a master regulator of Rv2028-Rv2031 (HspX) operon.  Frontiers in Microbiology. (In press) (IF 3.941)

Siddiqui, K.F.; Amir, M.; Khan, N.; Gurram, R.K.; Sheikh, J.A.; Rajagopal, K. and Agrewala, J.N. 
Prime-boost vaccination strategy utilizing BCG and latency associated protein Acr1 reinvigorates BCG potency. J. Clin. Exp. Immunol. (In press) (IF  )

Stark, B.; Pagilla, K. and Dikshit, K. L. 
Recent applications of Vitreoscilla haemoglobin technology in bio-product sysnthesis and bioremediation. Appl. Microb. Biotechnol. 99, 1627-1636, 2015. (IF 3.811)

Kaur, G. and Subramanian, S.
The insertion domain 1 of class IIA dimeric glycyl-tRNA synthetase is a rubredoxin-like zinc ribbon.  J. Struct. Biol. S1047-8477(15)00035-0., 2015. (IF 3.369)

Bhutani I, Loharch S, Gupta P, Madathil R, Parkesh R.
Structure, dynamics, and interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 examined by molecular modeling, simulation, and electrostatic studies. PLoS One.,  10:e0119771, 2015.

Loharch, S.; Bhutani, I.; Jain, K.; Gupta, P.; Sahoo, D.K. and Parkesh, R.
EpiDBase: a manually curated database for small molecule modulators of epigenetic landscape. Database (Oxford). 2015.  

Dhar, J.; Chakrabarti, P.; Saini, H.; Raghava, G.P. and Kishore, R.
ω-Turn: A novel β-turn mimic in globular proteins stabilized by main-chain to side-chain CH···O interaction. Proteins. 83, 203-214, 2015. (IF 2.921)

Singh, H.; Singh, S. and Raghava, G.P.S.
In silico platform for predicting and initiating β-turns in a protein at desired locations.
Proteins. 83, 910-921, 2015 (IF 2.921)

Panwar, B. and  Raghava, G.P.S.
Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides.  Genomics., 105, 197-203, 2015.  (IF 2.793)

Kachhapa, S and Singh, B. 
Role of DNA conformation & energetic insights in Msx-1-DNA recognition as revealed by molecular dynamics studies on specific and nonspecific complexes. J. Biomol. Struct. Dyn.,1-14, 2015.  (IF 2.916).

Vaidya, B.; Kumar, R.; Korpole, S.; Tanuku, N.R. and Pinnaka, A.K.
Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium of the family Alteromonadaceae isolated from coastal surface sea water. Int J Syst Evol Microbiol. (In press)  (IF 2.798)

Gupta, S.; Kapoor, P.; Chaudhary, K.; Gautam, A.; Kumar, R.; Raghava, G.P.S.
Peptide toxicity prediction.  Methods Mol Biol., 1268, 143-157, 2015. 

Singh, S.; Rathore, Y.S.; Bhando, T.; Hade, M.D.; Ashish and  Dikshit, K.L.
Bilobed shape of PadA reveals the connectivity from single to multi-domain bacterial plasminogen activators. Int.  J. Biol. Macromol. 78, 370-378, 2015.

Hoque, M.; Nanduri, R.; Gupta, J.; Mahajan, S.; Gupta, P. and  Saleemuddin, M.
Oleic acid complex of bovine α-lactalbumin induces eryptosis in human and other erythrocytes by a Ca2+-independent mechanism. Biochim.  Biophys.  Acta. (In press) 

 
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