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IN PRESS

 

Kumar, R.; Chaudhary, K.; Sharma, M.; Nagpal, G.; Chauhan, J.S.; Singh, S.; Gautam, A. and Raghava, G.P.S.
AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. Nucleic Acids Res. 

Tyagi, A.; Tuknait, A.; Anand, P.; Gupta, S.; Sharma, M.; Mathur, D.; Joshi, A.; Singh, S.; Gautam, A. and Raghava, G.P.S.
CancerPPD: a database of anticancer peptides and proteins.  Nucleic Acids Res., 2014. 

Tomar, R.; Sharma, P.; Srivastava, A.; Bansal, S.; Ashish and Kundu, B.
Structural and functional insights into an archaealL-asparaginase obtained through the linker-less assembly of constituent domains. Acta Crystallogr. D Biol. Crystallogr., 2014. 

Singh, N. and Kumar, A.
Virulence factor SenX3 is the oxygen-controlled replication  switch of Mycobacterium tuberculosis. Antioxidants and Redox Signalling., 2014.

Gowthaman, U.; Mushtaq, K.; Tan, A.C.; Rai, P.K.; Jackson, D.C. and Agrewala, J.N.
Challenges and solutions for a rational vaccine design for TB-endemic regions. Crit. Rev. Microbiol., 2014. 

Mahajan, S.; Saini, A.; Kalra, R. and Gupta, P.
Frienemies of infection: A chronic case of host nuclear receptors acting as cohorts or combatants of infection. Crit. Rev. Microbiol., 2014. 

Chodisetti, S.B.; Gowthaman, U.; Rai, P.K.; Vidyarthi, A.; Khan, N. and Agrewala, J.N.
Triggering Through Toll-like Receptor 2 Limits Chronically Stimulated T-helper Type 1 Cells From Undergoing Exhaustion. J. Infect. Dis. .

Chopra, L.; Singh, G.; Jena, K.K.; Verma, H. and Sahoo, D.K.
 2014. Bioprocess     development for the production of sonorensin by Bacillus sonorensis MT93 and     its application as a food preservative. Bioresource Technology, 2014. .

Suneet Kaur, Gautam Srivastava, R. N. Sharma and Ravinder S. Jolly
immunosuppressive agent Caerulomycin A exerts its effect by depleting cellular iron content. British Journal of Pharmacology 

Dkhar, H.K.; Gopalsamy, A.; Loharch, S.; Kaur, A.; Bhutani, I.; Saminathan, K.; Bhagyaraj, E.; Chandra, V.; Swaminathan, K.; Agrawal, P.; Parkesh, R. and Gupta, P.
Discovery of Mycobacterium tuberculosis α-1,4-glucan branching enzyme (GlgB) inhibitors by structure and ligand based virtual screening. J. Biol. Chem., 2014. 

Solanki, A.K.; Rathore, Y.S.; Badmalia, M.D.; Dhoke, R.R.; Nath, S.K.; Nihalani, D. and Ashish.
Global shape and ligand binding efficiency of the HIV-1 neutralizing antibodies differs from the ones which cannot neutralize. J. Biol. Chem., 2014. 

Solanki, A.K.; Rathore, Y.S.; Badmalia, M.D.; Dhoke, R.R.; Nath, S.K.; Nihalani, D. and Ashish.
Global shape and ligand binding efficiency of the HIV-1 neutralizing antibodies differs from the ones which cannot neutralize. J. Biol. Chem., 2014. 

Loharch, S.; Isha.; Jain, K.; Gupta, P.; Sahoo, D.K. and  Parkesh, R.
EpiDBase:a manually curated database of epigenetic landscape. Database, 2014.

Gautam, A.; Sharma, M.; Vir, P.; Chaudhary, K.; Kapoor, P.; Kumar, R.; Nath, S.K. and Raghava, G.P.S.
Identification and characterization of novel protein derived arginine-rich cell penetrating peptides. Eur. J. Pharm. Biopharm., 2014. 

Mehta, D.; Anand, P.; Kumar, V.; Joshi, A.; Mathur, D.; Singh, S.; Tuknait, A.; Chaudhary, K.; Gautam, S.K.; Gautam, A.; Varshney, G.C. and Raghava, G.P.S.
ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures. Database (Oxford)., 2014. 

Das, S.; Ghosh, A.K.; Singh, S.; Saha, B.; Ashish and Das, P.
UnmethylatedCpG-motifs in the L. donovani DNA regulate TLR9-dependent delay of programmed cell death in macrophages J Leuk Biol., 2014. 

Singh, P.K.; Solanki, V.; Sharma, S.; Thakur, K.G.; Krishnan, B. and Korpole, S.
The intramolecular disulfide-stapled structure of laterosporulin, a class IIdbacteriocin, conceals a human defensin-like structural module. FEBS J., 2014. 

Dureja, C.; Mahajan, S. and Chaudhuri, S.R.
Phylogenetic distribution and prevalence of genes encoding class I integrons and CTX-M-15 extended-spectrum- β-lactamases in Escherichia coli isolates from healthy humans in Chandigarh, India. PLoS One. 

Bhutani, I., Gupta, P.; Madathil, R.; and Parkesh, R.
Structure, dynamics, and interaction of DprE1 and DprE2 examined by molecular modeling, simulation, and electrostatic studies. Plos one. 

Singh, A.K.; Singh, M.; Pandya, V.K.; G .L. B.; Singh, V.; Ekka, M.K.; Mittal, M. and Kumaran, S.
Molecular Basis of Peptide Recognition in Metallopeptidase, Dug1p from Saccharomyces cerevisiae. Biochemistry. 
 
Ishaq, M.; Khan, M.A.; Sharma, K.; Sharma, G.; Dutta, R.K. and Majumdar, S.
Gambogic acid induced oxidative stress dependent caspase activation regulates both apoptosis and autophagy by targeting various key molecules (NF-κB, Beclin-1, p62 and NBR1) in human bladder cancer cells.  Biochim. Biophys. Acta. 

Dhar, J.; Chakrabarti, P.; Saini, H.; Raghava, G.P. and Kishore, R.
ω-Turn: A novel β-turn mimic in globular proteins stabilized by main-chain to side-chain CH···O interaction. Proteins. 

Singh, N.S.; Kachhap, S.; Singh, R.; Mishra, R. C.; Singh B. and Chaudhuri, S.R.
The length of glycine rich linker in DNA binding domain is critical for optimal functioning of quorum sensing master regulatory protein HapR. Mol. Genet. Genomics. 

Singh, P.K.; Sharma, S.; Kumari, A. and Korpole, S.
A non-pediocin low molecular weight antimicrobial peptide produced by Pediococcuspentosaceus strain IE-3 shows increased activity under reducing environment. BMC Microbiol. 

Shukla, A. and Cameotra, S.S.
Atomic Absorption Spectrophotometer: Principle, General description and Applications in Micro and Geo microbiology. Microbiology Applications. 

 

Singh, R.; Anil Kumar, V.; Das, A.K.; Bansal, R. and  Sarkar, D.

A transcriptional co-repressor regulatory circuit controlling the heat-shock response of Mycobacterium tuberculosis. Mol. Microbial.


Tuteja, S.; Sabherwal, P.; Deep, A.; Rastogi, R.; Paul, A. and  Suri, C.R.;

Bio-functionalized rebar graphene (f-RG) for label free detection of cardiac marker troponin I.  ACS Applied Materials and Interfaces. 


Srivastava, G.;   Pal,M.;    Kaur, S. and jolly, R.S. 

A highly efficient designer cell for enantioselective reduction of ketones. Catal. Sci. Technol. 


Ishaq, M.; Khan, M.A.; Sharma, K.; Sharma, G.; Dutta, R.K. and Majumdar, S.

Gambogic acid induced oxidative stress dependent caspase activation regulates both apoptosis and autophagy by targeting various key molecules (NF-κB, Beclin-1, p62 and NBR1) in human bladder cancer cells.  Biochim. Biophys. Acta. 


Sharma, G.; Dutta, R.K.; Khan, M.A.; Ishaq, M.; Sharma, K.; Malhotra, H. and Majumdar, S.

IL-27 inhibits IFN-γ induced autophagy by concomitant induction of JAK/PI3 K/Akt/mTOR cascade and up-regulation of Mcl-1 in Mycobacterium tuberculosis H37Rv infected macrophages. Int. J. Biochem. Cell. Biol. 

 

Malhotra,A.;  Sharma, N.;  Navdezda;  Kumar, N.; Dolma, K.;  Sharma, D.; Nandanwar, H.S.  and Choudhury, A.R.

Multi-analytical approach to understand biomineralization of gold using rice bran: a novel and economical route. RSC Advances.


Sheokand, N.;  Malhotra, H.; Kumar, S.; Tillu, V.A.; Chauhan, A.S.; Raje, C.I. and  Raje M.

Moonlighting cell surface GAPDH recruits Apo Transferrin to effect iron egress from mammalian cells. J. Cell. Sci. 

 

Maurya, N.; Gujar, R.; Gupta, M.; Yadav, V.; Verma, S. and Sen, P.

Immunoregulation of dendritic cells by the receptor T cell immunoglobulin and mucin protein -3 (TIM-3) via bruton’s tyrosine kinase and c-Src. J. Immunol.


Singla, A.K.; Gurram, R.K.; Chauhan, A.;  Khatri, N.; Vohra, R.M.;  Jolly, R.S. and Agrewala, J.N.

Caerulomycin A suppresses immunity by inhibiting T cells activity. PLoS One.

 

Sabherwal, P.; Shorie, M.;  Pathania, P.; Chaudhary, S.; Bhasin, K.; Bhalla, V. and Suri, C.R.

A hybrid aptamer-antibody linked FRET based detection of trinitrotoluene. Analytical Chemistry.

 

Vaishampayan, P.; Roberts, A.;  Augustus,A.;  Pukall, R.; Schumann, P.; schwendner, P.;  Shanmugam, Mayilraj;  Salmassi, T.  and kasthuri Venkateswaran

Deinococcus phoenicis sp. nov., an extreme ionizing radiation resistant bacterium isolated from the Phoenix Lander assembly facility. Int. J. Sys. Evol 

 

Kaur H, Singh S, Rathore YS, Sharma A, Furukawa K, Hohmann S, Fnu A, Mondal AK.

Differential Role of HAMP-like Linkers in Regulating the Functionality of the Group III Histidine Kinase DhNik1p. J. Biol. Chem. 


Gurram RK, Kujur W, Maurya SK, Agrewala JN.

Caerulomycin A enhances the TGF-β-Smad3 signalling by suppressing IFN-γ-STAT1 signalling to expand Tregs. J. Biol. Chem. 


Dkhar HK, Nanduri R, Mahajan S, Dave S, Saini A, Somavarapu AK, Arora A, Parkesh R, Thakur KG,Mayilraj S, Gupta P.

Mycobacterium tuberculosis Keto-Mycolic Acid and Macrophage Nuclear Receptor TR4 Modulate Foamy Biogenesis in Granulomas: A Case of a Heterologous and Noncanonical Ligand-Receptor Pair. J. Immunol. 


Mehta D, Anand P, Kumar V, Joshi A, Mathur D, Singh S, Tuknait A, Chaudhary K, Gautam SK, Gautam A, Varshney GC, Raghava GP.

ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures. Database (Oxford). 


Gowthaman U, Mushtaq K, Tan AC, Rai PK, Jackson DC, Agrewala JN.

Challenges and solutions for a rational vaccine design for TB-endemic regions. Crit. Rev. Microbiol.  


Manickam N, Singh NK, Bajaj A, Kumar RM, Kaur G, Kaur N, Bala M, Kumar A, Mayilraj S.

Bacillus mesophilum sp. nov., strain IITR-54T, a novel 4-chlorobiphenyl dechlorinating bacterium. Arch Microbiol. 


Gautam A, Kapoor P, Chaudhary K, Kumar R, Raghava GP.

Tumor Homing Peptides as Molecular Probes for Cancer Therapeutics, Diagnostics, and Theranostics. Curr. Med. Chem. 


Yadav IS, Singh H, Imran Khan M, Chaudhury A, Raghava GP, Agarwal SM.

EGFRIndb: Epidermal Growth Factor Receptor Inhibitor Database. Anticancer Agents Med Chem. 


Abhay Bajaj, Shanmugam Mayilraj, Mohana Krishna Reddy Mudiam, Devendra Kumar Patel and Natesan Manickam.

Isolation and functional analysis of a glycolipid producing Rhodococcus sp. strain IITR-03 with potential for degradation of 1,1,1-trichloro-2,2-bis (4-chlorophenyl) ethane-DDT.   Bioresource Technol. 


Navjot Kaur., Rajendran Mathan Kumar., Gurwinder Kaur and Shanmugam Mayilraj 

Isoptericola rhizophila sp. nov., a novel actinobacterium isolated from rhizosphere soil. Papers In Press; Antonie van Leeuwenhoek 

 

Gurwinder Kaur, Sathyaseelan Sathyabama, Amit Arora, Sheenam Verma, Nida Mubin, Javed N. Agrewala and Shanmugam Mayilraj (2014). Genome sequencing, annotation and comparative genomic analysis of Shigella dysenteriae strain SD1D. Gut Pathogens


Sathyaseelan Sathyabama, Gurwinder Kaur, Amit Arora, Sheenam Verma, Nida Mubin, Shanmugam Mayilraj and Javed N Agrewala.Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1. Gut Pathogens


Natesan Manickam, Nitin Kumar Singh, Abhay Bajaj, Rajendran Mathan Kumar,Gurwinder Kaur, Navjot Kaur, Monu Bala, Anand Kumar and Shanmugam Mayilraj . Bacillus mesophilum sp. nov., strain IITR‑54T, a novel 4‑chlorobiphenyl dechlorinating bacterium. Archives of Microbiology


Nitin Kumar Singh.,Chandandeep Kaur., Narender Kumar., Subramanian Velmurugan., Thavasimuthu Citarasu and Shanmugam Mayilraj. Bacillus aequororis sp. nov., strain M-8T isolated from marine sediment. Current Microbiology.

 

Nitin Kumar Singh.,Chandandeep Kaur., Narender Kumar., Subramanian Velmurugan., Thavasimuthu Citarasu and Shanmugam Mayilraj 

Bacillus aequororis sp. nov., strain M-8T isolated from marine sediment. Papers In Press, Current Microbiology. 

 

Jain, S.; Chodisetti, S.B. and  Agrewala, J.N.

Correction: Combinatorial Signaling through TLR-2 and CD86 Augments Activation and Differentiation of Resting B Cells. PLoS One.


Anirban Roy Choudhury; Ankit Malhotra; Paramita Bhattacharjee and Prasad, G.S.

Facile and rapid thermo-regulated biomineralization of gold by pullulan and study of its thermodynamic parameters. Carbohydrate Polymers 


Dastager, S.G. Shan-Kun T.; Krishnamurthi S.; Jae-Chan L. and Wen-Jun Li. 

Kocuria indica sp nov., isolated from sediment sample. Int J Syst Evol Microbiol. 

 

Nitin Kumar Singh, Indu Khatri, Srikrishna Subramanian and Shanmugam Mayilraj  Genome sequencing and annotation of Acinetobacter gerneri strain MTCC 9824T.  Elsevier: Genomics Data.
 
Indu Khatri, Nitin Kumar Singh, Srikrishna Subramanian and Shanmugam Mayilraj Genome sequencing and annotation of Acinetobacter haemolyticus strain MTCC 9819T. Elsevier: Genomics Data.
 
Indu Khatri, Nitin Kumar Singh, Srikrishna Subramanian and Shanmugam Mayilraj  Genome sequencing and annotation of Acinetobacter junii strain MTCC 11364. Elsevier: Genomics Data.
 
Navjot Kaur, Amit Arora, Narender Kumar and Shanmugam Mayilraj 
Genome sequencing and annotation of Laceyella sacchari strain GS 1-1, isolated from hot spring, Chumathang, Leh, India.  Elsevier: Genomics Data.
 
Navjot Kaur, Shailesh Kumar and Shanmugam Mayilraj 
Genome sequencing and annotation of Amycolatopsis vancoresmycina strain DSM 44592T. Elsevier: Genomics Data.
 
Indu Khatri, Srikrishna Subramanian and Shanmugam Mayilraj 
Genome sequencing and annotation of Amycolatopsis azurea  DSM 43854T.  Elsevier: Genomics Data.
 
Kazuyuki Kimura, Shailesh Kumar, Masahiro Takeoand Shanmugam Mayilraj  Genome sequencing, annotation of Citrobacter freundii strain GTC 09479. Elsevier: Genomics Data.

 

Choudhury, A. R.; Bhattacharjee, P. and Prasad, G. S. 

Development of Suitable Solvent System for Downstream Processing of Biopolymer Pullulan Using Response Surface Methodology. PLOS ONE 


Mehta, Ananya.;  Prasad, G.S. and Choudhury, A. R.

Cost effective production of pullulan from agri-industrial residues using response surface methodology. International Journal of Biological Macromolecules

 

Kumar, S.; Kanudia, P.; Karthokeyan, S. and Chakraborti P.K.

Identification of crucial amino acids of bacterial peptide deformylases affecting enzymatic activity in response to oxidative stress. J. Bacteriology


Aneja, R.; Datt, M.; Yadav, S. and Sahni, G.

Multiple exosites distributed across the three domains of streptokinase co-operate to generate high catalytic rates in the streptokinase-plasmin activator complex. Biochemistry.


Kaur, C.; Pinnaka, A.K.; Singh, N.K.; Bala, M. and Shanmugam Mayilraj Agromyces arachidis sp. nov., isolated from a peanut (Arachis hypogaea) crop field. Int. J. Microbiol.         


Singh, N.K.; Khatri, I.; Subramanian, S.  and Shanmugam Mayilraj

Genome sequencing and annotation of Acinetobacter gyllenbergii strain MTCC 11365T. Genomics Data.


Singh, N.K.; Khatri, I.; Subramanian, S.  and Shanmugam Mayilraj

Genome sequencing and annotation of Acinetobacter guillouiae strain MSP 4-18. Genomics Data. 

 

Ansari, Md. A.; Khan, H.M.; Khan, A.A.; Ahmad, Md. K.; Mahdi, A.A.; Pal, R. and Cameotra, S.S.

Interaction of silver nanoparticles with Escherichia coli and their cell envelope biomolecules. J. Basic Microbiology.


Khan, Md. S. A.; Ahmad, I.; and Cameotra, S.S.

Phenyl aldehyde and propanoids exert multiple sites of action towards cell membrane and cell wall targeting ergosterol in Candida albicans. AMB Express.


Noorpreet, I.; Kaur, D.; Kaur, P.; Sud, D. and Cameotra, S.S.

Persistence and Biodegradation of Quinalphos using Soil Microbes. Water  Environment.


Dhanjal, S.; Singh, A.K. and Cameotra, S. S.

Global gene expression analysis of bacterial stress response to elevated concentrations of toxic metalloids-Selenium and Arsenic. Geomicrobiology

 

Malhotra, A.; Dolma, K.;  Kaur, N.; Rathore, Y.S.; Ashish, S. Mayilraj and Choudhury, A.R.

Biosynthesis of gold and silver nanoparticles using a novel marine strain of Stenotrophomonas.  Bioresource Technology 


 
PUBLICATIONS DURING 2015
 
 
 
Kumar, R.; Chaudhary, K.; Sharma, M.; Nagpal, G.; Chauhan, J.S.; Singh, S.; Gautam, A. and Raghava, G.P.S.
AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides.  Nucleic Acids Res., 43, D956-62, 2015. (IF 8.808 )

Tyagi, A.; Tuknait, A.; Anand, P.; Gupta, S.; Sharma, M.; Mathur, D.; Joshi, A.; Singh, S.; Gautam, A. and Raghava, G.P.S. 
CancerPPD: a database of anticancer peptides and proteins. Nucleic Acids Res., 43, D837-43, 2015. (IF 8.808)

Singh, N. and Kumar, A. 
Virulence factor sSenX3 is the oxygen-controlled
replication switch of Mycobacterium tuberculosis. Antioxidants and Redox Signalling., 22, 603-613, 2015. (IF 7.667)

Chodisetti, S.B.; Gowthaman, U.; Rai, P.K.; Vidyarthi, A.; Khan, N. and Agrewala, J.N.
Triggering Through Toll-like Receptor 2 Limits Chronically Stimulated T-helper Type 1 Cells From Undergoing Exhaustion. J. Infect. Dis. 211, 486-496, 2015. (IF 5.778)

Kaur, S.; Srivastava, G.; Sharma, R.N. and Jolly, R.S.
immunosuppressive agent Caerulomycin A exerts its effect by depleting cellular iron content. Br. J. Pharmacol. 172(9), 2286-2299, 2015. (IF 4.99)

Srivastava, G.; Pal, M.; Kaur, S. and Jolly, R.S.
A highly efficient designer cell for enantioselective reduction of ketones. Catal. Sci. Technol., 5, 105-108, 2015. (IF 4.76).

Dkhar, H.K.; Gopalsamy, A.; Loharch, S.; Kaur, A.; Bhutani, I.; Saminathan, K.; Bhagyaraj, E.; Chandra, V.; Swaminathan, K.; Agrawal, P.; Parkesh, R. and Gupta, P.
Discovery of Mycobacterium tuberculosis α-1,4-glucan branching enzyme (GlgB) inhibitors by structure and ligand based virtual screening. J. Biol. Chem., 290(1), 76-89, 2015. (IF 4.60)

Nanduri, R.; Mahajan, S.; Bhagyaraj, E.; Sethi, K.; Kalra, R.; Chandra, V. and Gupta, P.
The Active Form of Vitamin D Transcriptionally Represses Smad7 Signaling and Activates Extracellular Signal-regulated Kinase (ERK) to Inhibit the Differentiation of a Inflammatory T Helper Cell Subset and Suppress Experimental Autoimmune Encephalomyelitis. J. Biol. Chem.,  290, 12222-12236, 2015. (IF 4.60)

Mahajan S, Saini A, Chandra V, Nanduri R, Kalra R, Bhagyaraj E, Khatri N, Gupta P.
Nuclear receptor Nr4a2 promotes alternative polarization of macrophages and confer protection in sepsis. J Biol Chem.  (In Press) (IF 4.60)

Islam, Z.; Kumar, A.; Singh, S.; Salmon, L. and Karthikeyan, S.
Structural Basis for Competitive Inhibition of 3,4-Dihydroxy-2-Butanone-4-Phosphate Synthase from Vibrio cholera. J. Biol Chem., 290(18), 11293-11308, 2015 (IF 4.60)

Agrawal, Y.; Khatri, I.; Subramanian, S. and Shenoy, B.D.
Genome sequence, comparative analysis and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii. Genome Biol. Evol. 7, 916-930, 2015.  (IF 4.532)

Bhatia, R.; Gautam, A.; Gautam, S.K.; Mehta, D.; Kumar, V.; Raghava, G.P.S. and  Varshney, G.C.
Assessment of SYBR Green I Dye-Based fluorescence Assay for Screening Antimalarial Activity of Cationic Peptides and DNA Intercalating Agents. Antimicrob Agents Chemother. 59, 2886-2889, 2015. (IF 4.451)

Das, S.; Ghosh, A.K.; Singh, S.; Saha, B.; Ashish and Das, P.
UnmethylatedCpG-motifs in the L. donovani DNA regulate TLR9-dependent delay of programmed cell death in macrophages J Leuk Biol., 97(2), 363-378, 2015. (IF 4.304)

Gautam, A.; Sharma, M.; Vir, P.; Chaudhary, K.; Kapoor, P.; Kumar, R.; Nath, S.K. and Raghava, G.P.S. 
Identification and characterization of novel protein derived arginine-rich cell penetrating peptides. Eur. J. Pharm. Biopharm., 89, 93-106., 2015. (IF 4.245)

Dixit, P.;  Mehta, A.; Gahlawat, G.; Prasad, G.S. and Choudhury, A.R.
Understanding the effect of interaction among aeration, agitation and impeller positions on mass transfer during pullulan fermentation by  AUREOBASIDIUM PULLULANS.  RSC ADVANCES, 5, 38984-38994, 2015.

Singh, P.K.; Solanki, V.; Sharma, S.; Thakur, K.G.; Krishnan, B. and Korpole, S.
The intramolecular disulfide-stapled structure of laterosporulin, a class IIdbacteriocin, conceals a human defensin-like structural module. FEBS J., 282(2), 203-214, 2015. (IF 3.986)

Mushtaq, K.; Sheikh, J.A.;  Md. Amir; Khan, N.; Singh, B. and  Agrewala, J.N.
 Rv2031c of Mycobacterium tuberculosis: a master regulator of Rv2028-Rv2031 (HspX) operon.  Frontiers in Microbiology. (In press) (IF 3.941)

Siddiqui, K.F.; Amir, M.; Khan, N.; Gurram, R.K.; Sheikh, J.A.; Rajagopal, K. and Agrewala, J.N. 
Prime-boost vaccination strategy utilizing BCG and latency associated protein Acr1 reinvigorates BCG potency. J. Clin. Exp. Immunol. (In press) (IF  )

Stark, B.; Pagilla, K. and Dikshit, K. L. 
Recent applications of Vitreoscilla haemoglobin technology in bio-product sysnthesis and bioremediation. Appl. Microb. Biotechnol. 99, 1627-1636, 2015. (IF 3.811)

Kaur, G. and Subramanian, S.
The insertion domain 1 of class IIA dimeric glycyl-tRNA synthetase is a rubredoxin-like zinc ribbon.  J. Struct. Biol. S1047-8477(15)00035-0., 2015. (IF 3.369)

Bhutani I, Loharch S, Gupta P, Madathil R, Parkesh R.
Structure, dynamics, and interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 examined by molecular modeling, simulation, and electrostatic studies. PLoS One.,  10:e0119771, 2015.

Loharch, S.; Bhutani, I.; Jain, K.; Gupta, P.; Sahoo, D.K. and Parkesh, R.
EpiDBase: a manually curated database for small molecule modulators of epigenetic landscape. Database (Oxford). 2015.  

Dhar, J.; Chakrabarti, P.; Saini, H.; Raghava, G.P. and Kishore, R.
ω-Turn: A novel β-turn mimic in globular proteins stabilized by main-chain to side-chain CH···O interaction. Proteins. 83, 203-214, 2015. (IF 2.921)

Singh, H.; Singh, S. and Raghava, G.P.S.
In silico platform for predicting and initiating β-turns in a protein at desired locations.
Proteins. 83, 910-921, 2015 (IF 2.921)

Panwar, B. and  Raghava, G.P.S.
Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides.  Genomics., 105, 197-203, 2015.  (IF 2.793)

Kachhapa, S and Singh, B. 
Role of DNA conformation & energetic insights in Msx-1-DNA recognition as revealed by molecular dynamics studies on specific and nonspecific complexes. J. Biomol. Struct. Dyn.,1-14, 2015.  (IF 2.916).

Vaidya, B.; Kumar, R.; Korpole, S.; Tanuku, N.R. and Pinnaka, A.K.
Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium of the family Alteromonadaceae isolated from coastal surface sea water. Int J Syst Evol Microbiol. (In press)  (IF 2.798)

Gupta, S.; Kapoor, P.; Chaudhary, K.; Gautam, A.; Kumar, R.; Raghava, G.P.S.
Peptide toxicity prediction.  Methods Mol Biol., 1268, 143-157, 2015. 

Singh, S.; Rathore, Y.S.; Bhando, T.; Hade, M.D.; Ashish and  Dikshit, K.L.
Bilobed shape of PadA reveals the connectivity from single to multi-domain bacterial plasminogen activators. Int.  J. Biol. Macromol. 78, 370-378, 2015.

Hoque, M.; Nanduri, R.; Gupta, J.; Mahajan, S.; Gupta, P. and  Saleemuddin, M.
Oleic acid complex of bovine α-lactalbumin induces eryptosis in human and other erythrocytes by a Ca2+-independent mechanism. Biochim.  Biophys.  Acta. (In press) 

 

PUBLICATIONS DURING 2014 

 Boradia, V.M.; Malhotra, H.; Thakkar, J.S.; Tillu, V.A.; Vuppala, B.; Patil, P.; Sheokand, N.; Sharma, P.; Chauhan, A.S.; Raje, M. and Raje, C.I.

Mycobacterium tuberculosis acquires iron by cell-surface sequestration and internalization of human holo-transferrin. Nat. Commun., 5, 4730, 2014.

 

Sheokand, N.; Malhotra, H.; Kumar, S.; Tillu, V.A.; Chauhan, A.S.; Raje, C.I. and Raje, M.

Moonlighting cell-surface GAPDH recruits apotransferrin to effect iron egress from mammalian cells. J. Cell Sci., 127, 4279-4291, 2014.

 

Shukla, J.; Gupta, R.; Thakur, K.G.; Gokhale, R. and Gopal, B.

Structural basis for the redox sensitivity of the Mycobacterium tuberculosis SigK-RskA σ-anti-σ complex. Acta Crystallogr. D Biol. Crystallogr, 70, 1026-1036, 2014.

 

Priyanka, Shorie, M.; Bhalla, V.; Pathania, P. and Suri, C.R.

Nanobioprobe mediated DNA aptamers for explosive detection. Chem. Commun. (Camb)., 50, 1080-1082, 2014.

 

Sathyabama, S.; Khan, N. and Agrewala, J.N.

Friendly pathogens: prevent or provoke autoimmunity. Crit. Rev. Microbiol., 40, 273-280, 2014.

 

Tuteja, S.K.; Sabherwal, P.; Deep, A.; Rastogi, R.; Paul, A.K. and Suri, C.R.

Biofunctionalized rebar graphene (f-RG) for label-free detection of cardiac marker troponin I. ACS Appl. Mater. Interfaces., 6, 14767-14771, 2014.

 

Sabherwal, P.; Shorie, M.; Pathania, P.; Chaudhary, S.; Bhasin, K.K.; Bhalla, V. and Suri, C.R.

Hybrid aptamer-antibody linked fluorescence resonance energy transfer based detection of trinitrotoluene. Anal Chem., 86, 7200-7204, 2014.

 

Siddiqui, K.F.; Amir, M.; Gurram, R.K.; Khan, N.; Arora, A.; Rajagopal, K. and Agrewala, J.N.

Latency-associated protein Acr1 impairs dendritic cell maturation and functionality: a possible mechanism of immune evasion by Mycobacterium tuberculosis. J. Infect. Dis.,  209, 1436-1445, 2014.

 

Bajaj, A.; Mayilraj, S.; Mudiam, M.K.; Patel, D.K. and Manickam, N.

Isolation and functional analysis of a glycolipid producing Rhodococcus sp. strain IITR03 with potential for degradation of 1,1,1-trichloro-2,2-bis(4-chlorophenyl)ethane (DDT). Bioresource Technology, 167, 398-406, 2014.

 

Dkhar, H.K.; Nanduri, R.; Mahajan, S.; Dave, S.; Saini, A.; Somavarapu, A.K.; Arora, A.; Parkesh, R.; Thakur, K.G.; Mayilraj, S. and Gupta, P.

Mycobacterium tuberculosis keto-mycolic acid and macrophage nuclear receptor TR4 modulate foamy biogenesis in granulomas: a case of a heterologous and noncanonical ligand-receptor pair. J. Immunol., 193, 295-305, 2014.

 

Maurya, N.; Gujar, R.; Gupta, M.; Yadav, V.; Verma, S. and Sen, P.

Immunoregulation of dendritic cells by the receptor T cell Ig and mucin protein-3 via Bruton's tyrosine kinase and c-Src. J. Immunol.,193, 3417-3425, 2014.

 

Singh, R.; Vijjamarri, A. K.; Das, A. K.; Bansal, R. and Sarkar, D.

A transcriptional co-repressor regulatory circuit controlling the heat-shock response of Mycobacterium tuberculosis. Molecular Microbiology, 94, 450-465, 2014.

 

Pandey, S.K.; Vinayaka, A.C.; Rishi, D.B.; Rishi, P. and Suri, C.R.

Immuno-fluorescence based Vi capsular polysaccharide detection for specific recognition of Salmonella entericaserovarTyphi in clinical samples. Anal. Chim. Acta., 841, 51-57, 2014.

 

Tuteja, S.K.; Priyanka, Bhalla, V.; Deep, A.; Paul, A.K. and Suri, C.R.

Graphene-gated biochip for the detection of cardiac marker Troponin I. Anal. Chim. Acta., 809, 148-154, 2014.

 

Gurram, R.K.; Kujur, W.; Maurya, S.K. and Agrewala, J.N.

Caerulomycin A enhances transforming growth factor-β (TGF-β)-Smad3 protein signaling by suppressing interferon-γ (IFN-γ)-signal transducer and activator of transcription 1 (STAT1) protein signaling to expand regulatory T cells (Tregs). J. Biol. Chem., 289,17515-17528, 2014.

 

Kaur, H.; Singh, S.; Rathore, Y.S.; Sharma, A.; Furukawa, K.; Hohmann, S.; Ashish, and Mondal, A.K.

Differential role of HAMP-like linkers in regulating the functionality of the group III histidine kinase DhNik1p. J. Biol. Chem., 289, 20245-20258, 2014.

 

Arif, E.; Rathore, Y.S.; Kumari, B.; Ashish, F.; Wong, H.N.; Holzman, L.B. and Nihalani, D.

Slit diaphragm protein Neph1 and its signaling: a novel therapeutic target for protection of podocytes against glomerular injury. J. Biol. Chem., 289, 9502-9518, 2014.

 

Kaur, H.; Singh, S.; Rathore, Y.S.; Sharma, A.; Furukawa, K.; Hohmann, S.; Ashish, and Mondal, A.K.

Differential role of HAMP-like linkers in regulating the functionality of the group III histidine kinase DhNik1p. J. Biol. Chem., 289, 20245-20258, 2014.

 

Arif, E.; Rathore, Y.S.; Kumari, B.; Ashish, F.; Wong, H.N.; Holzman, L.B. and Nihalani, D.

Slit diaphragm protein Neph1 and its signaling: a novel therapeutic target for protection of podocytes against glomerular injury. J. Biol. Chem., 289, 9502-9518, 2014.

 

Mushtaq, K.; Chodisetti, S.B.; Rai, P.K.; Maurya, S.K.; Amir, M.; Sheikh, J.A. and Agrewala, J.N.

Decision-making critical amino acids: role in designing peptide vaccines for eliciting Th1 and Th2 immune response. Amino Acids., 46, 1265-1274, 2014.

 

Sharma, G.; Dutta, R.K.; Khan, M.A.; Ishaq, M.; Sharma, K.; Malhotra, H. and Majumdar, S.

IL-27 inhibits IFN-γ induced autophagy by concomitant induction of JAK/PI3 K/Akt/mTOR cascade and up-regulation of Mcl-1 in Mycobacterium tuberculosis H37Rv infected macrophages. Int. J. Biochem. Cell. Biol., 55, 335-347, 2014.

 

Singh, A.K.; Rautela, R. and Cameotra, S.S.

Substrate dependent in vitro antifungal activity of Bacillus sp strain AR2. Microb. Cell Fact., 13, 67, 2014.

 

Singh, A.K.; Dhanjal, S. and Cameotra, S.S.

Surfactin restores and enhances swarming motility under heavy metal stress. Colloids Surf. B. Biointerfaces., 116, 26-31, 2014.

 

Malhotra, A.; Sharma, N.; Kumar, N.; Dolma, K.; Sharma, D.; Nandanwar, H. and Choudhury, A.R.

Multi-analytical approach to understand biomineralization of gold using rice bran: a novel and economical route. RSC Advances., 4, 39484-39490, 2014.

 

Choudhury, A.R.; Malhotra, A.; Bhattacharjee, P. and Prasad, G.S.

Facile and rapid thermo-regulated biomineralization of gold by pullulan and study of its thermodynamic parameters. Carbohydr. Polym., 106,154-159, 2014.

 

Chopra, L.; Singh, G.; Choudhary, V. and Sahoo, D.K.

Sonorensin: an antimicrobial peptide, belonging to the heterocycloanthracin subfamily of bacteriocins, from a new marine isolate, Bacillus sonorensis MT93. Appl. Environ. Microbiol., 80, 2981-2990, 2014.

 

Midha, S. and Patil, P.B

Genomic Insights into the Evolutionary Origin of Xanthomonasaxonopodispv. citri and Its Ecological Relatives. Appl. Environ. Microbiol., 80 6266-6279, 2014.

 

Mehta, A.; Prasad, G.S. and Choudhury, A.R.

Cost effective production of pullulan from agri-industrial residues using response surface methodology. Int. J. Biol. Macromol., 64, 252-256, 2014.

 

Boradia, V.M.; Raje, M. and Raje, C.I.

Protein moonlighting in iron metabolism: glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Biochem. Soc. Trans., 42, 1796-1801, 2014.

 

Kaur, R.; Ramesh, M.; Bharatam, P.V. and Kishore, R.

Self-association behavior of a novel nonproteinogenic β-strand-mimic in an organic solvent. J. Phys. Chem. B., 118, 9199-9208, 2014.

 

Pandey, K.; Dhoke, R.R.; Rathore, Y.S.; Nath, S.K.; Verma, N.; Bawa, S. and Ashish.

Low pH overrides the need of calcium ions for the shape-function relationship of calmodulin: resolving prevailing debates. J. Phys. Chem. B., 118, 5059-5074, 2014.

 

Kaur, G. and Subramanian, S.
Repurposing TRASH: emergence of the enzyme organomercuriallyase from a non-catalytic zinc finger scaffold. J. Struct. Biol., 188, 16-21, 2014.

 

Srinivasan, V.B.; Singh, B.B.; Priyadarshi, N.; Chauhan, N.K. and Rajamohan, G.

Role of novel multidrug efflux pump involved in drug resistance in Klebsiellapneumoniae. PLoS One., 9, e96288, 2014.

 

Kumar, S.; Sharma, P.; Arora, K.; Raje, M. and Guptasarma, P.

Calcium binding to beta-2-microglobulin at physiological pH drives the occurrence of conformational changes which cause the protein to precipitate into amorphous forms that subsequently transform into amyloid aggregates. PLoS One., 9,  e95725, 2014.

 

Singla, A.K.; Gurram, R.K.; Chauhan, A.; Khatri, N.; Vohra, R.M.; Jolly, R.S. and Agrewala, J.N.

Caerulomycin A suppresses immunity by inhibiting T cell activity. PLoS One., 9: e107051, 2014.

 

Singh, A.; Vaidya, B.; Khatri, I.; Srinivas, T.N.; Subramanian, S.; Korpole, S. and Pinnaka, A.K.

GrimontiaindicaAK16(T), sp. nov., isolated from a seawater sample reports the presence of pathogenic genes similar to Vibrio genus. PLoS One., 9: e85590, 2014.

 

Mehta, A.; Sidhu, C.; Pinnaka, A.K. and Choudhury, A. R.

Extracellular Polysaccharide Production by a Novel Osmotolerant Marine Strain of Alteromonasmacleodii and Its Application towards Biomineralization of Silver. PLoS One., 9:e98798, 2014.

 

Singh, H.; Singh, S. and Raghava, G.P.S.

Evaluation of protein dihedral angle prediction  methods. PLoS One., 9: e10566, 2014.

 

Chauhan, J.S.; Dhanda, S.K.; Singla, D.; Open Source Drug Discovery Consortium, Agarwal, S.M. and Raghava G.P.S.

QSAR-based models for designing quinazoline/imidazothiazoles/pyrazolopyrimidines based inhibitors against wild and mutant EGFR. PLoS One., 9: e101079, 2014.

 

Agrawal, P.; Gupta, P.; Swaminathan, K. and Parkesh, R.

α-Glucan Pathway as a Novel Mtb Drug Target: Structural Insights and Cues for Polypharmcological Targeting of GlgB and GlgE. Curr. Med. Chem., 21, 4074-4084, 2014.

 

Lohan, S.; Cameotra, S.S. and Bisht, G.S.

Antibacterial evaluation of structurally amphipathic, membrane active small cationic peptidomimetics: synthesized by incorporating 3-amino benzoic acid as peptidomimetic element. Eur. J. Med. Chem., 83, 102-115, 2014.

 

Lohan, S.; Monga, J.; Cameotra, S.S. and Bisht, G.S.

In vitro and in vivo antibacterial evaluation and mechanistic study of ornithine based small cationic lipopeptides against antibiotic resistant clinical isolates. Eur. J. Med. Chem., 88, 19-27, 2014.

 

Kaur, G.; Dutta, D. and Thakur, K.G.

Crystal structure of Mycobacterium tuberculosis CarD, an essential RNA polymerase binding protein, reveals a quasidomain-swapped dimeric structural architecture. Proteins., 82, 879-884, 2014.

 

Lohan, S.; Kalanta, A.; Sonkusre, P.; Cameotra, S.S. and Bisht, G.S.

Development of novel membrane active lipidatedpeptidomimetics active against drug resistant clinical isolates. Bioorg. Med. Chem., 22, 4544-4552, 2014.

 

Sharma, D.; Mayilraj, S and Manhas, R.K.

Streptomyces amritsarensis sp. nov.,exhibitingbroad-spectrum antimicrobial activity.  Antonie. Van. Leeuwenhoek, 105, 943-949, 2014.

 

Dastager, S.G.; Mawlankar, R.; Krishnamurthi, S.; Ramana, V  and Shouche, Y.
Bacillus enclensis sp. nov.isolated from marine sediment. Antonie. Van. Leeuwenhoek J. Microbiol. 105, 199-206, 2014.

 

Dastager, S.G.; Mawlankar, R.; Krishnamurthi S.; Shan-Kun T.; Jae-Chan L.; Venkata R. and Shouche, Y.S.

Fictibacillusenclensis sp. nov., isolated from marine sediment. Antonie. Van. Leeuwenhoek J. Microbiol., 105, 461-469, 2014.

 

Kaur, N.; Kumar, R.M.; Kaur, G. and Mayilraj, S.

Isoptericolarhizophila sp. nov., a novel actinobacterium isolated from rhizosphere soil. Antonie. Van. Leeuwenhoek., 106, 301-307, 2014.

 

Rautela, R.; Singh, A.K.;Shukla, A. and Cameotra, S.S.

Lipopeptides from Bacillus strain AR2 inhibits biofilm formation by Candida albicans. Antonie. Van. Leeuwenhoek., 105, 809-821, 2014.

 

Kumar, S.; Kanudia, P.; Karthikeyan, S. and Chakraborti, P.K.

Identification of crucial amino acids of bacterial Peptide deformylases affecting enzymatic activity in response to oxidative stress. J. Bacteriol., 196, 90-99, 2014.

 

Kaur, G.;Sengupta, S.; Kumar, V.; Kumari, A.; Ghosh, A.; Parrack, P. and Dutta, D.

Novel MntR-independent mechanism of manganese homeostasis in Escherichia coli by the ribosome-associated protein HflX. J. Bacteriol., 196, 2587-2597, 2014.

 

Kaur, G.; Sathyabama, S.; Arora, A.; Verma, S.; Mubin, N.; Agrewala, J.N. and Mayilraj, S.

Genome sequencing, annotation and comparative genomic analysis of Shigelladysenteriae strain SD1D. Gut Pathog., 6, 28, 2014.

 

Sathyabama, S.; Kaur, G.; Arora, A.; Verma, S.; Mubin, N.; Mayilraj, S. and Agrewala, J.N.

Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1. Gut Pathog., 6,8, 2014.

 

Kaur, S.; Yawar, M.; Pinnaka, A.K. and Korpole, S.

Hungatellaeffluvii gen. nov., sp. nov.an obligate anaerobic bacterium isolated from effluent treatment plant and reclassification of Clostridium hathewayi as Hungatellahathewayi comb. nov. Int. J. Syst. Evol. Microbiol., 64, 710-718, 2014.

 

Nupur, P.; Srinivas, T. N. R.; Takaichi, S. and Pinnaka, A.K.

Rhodovulum mangrovi sp. nov., a phototrophic alphaproteobacterium isolated from a sediment sample of Coringa mangrove forest, India. Int. J. Syst. Evol. Microbiol., 64, 3168-3173, 2014.

 

Panwar, B. and Raghava, G.P.S.

Prediction of uridine modifications in tRNA sequences. BMC Bioinformatics.,15, 326, 2014.

 

Sharma, A.; Singla, D.; Rashid, M. and Raghava, G.P.S.

Designing of peptides with desired half-life in intestine-like environment. BMC Bioinformatics., 15, 282, 2014.

 

Manickam, N.; Singh, N.K.; Bajaj, A.; Kumar, R.M.; Kaur, G.; Kaur, N.; Bala, M.; Kumar, A. and Mayilraj, S.

Bacillus mesophilum sp. nov., strain IITR-54T, a novel 4-chlorobiphenyl dechlorinating bacterium. Arch. Microbiol., 196, 517-523, 2014.

 

Singh, N.K.;Kaur, C.; Kumar, N.;Velmurugan, S.;Citarasu, T. and Mayilraj, S.

Bacillus aequororis sp. nov., Isolated From Marine Sediment. Curr. Microbiol., 69,758-762, 2014.

 

Khan, M.S.; Ahmad, I.; Cameotra, S.S. and Botha, F.

Sub-MICs of Carumcopticum and Thymus vulgaris influence virulence factors and biofilm formation in Candida spp. BMC Complement Altern. Med., 14, 337, 2014.

 

Dhanjal, N.I.;Kaur, P.;Sud, D. and Cameotra, S.S.

Persistence and biodegradation of quinalphos using soil microbes. Water Environ Res., 86, 457-461, 2014.

 

Khan, M.S.; Ahmad, I. and Cameotra, S.S.

Carumcopticum and Thymus vulgaris oils inhibit virulence in Trichophytonrubrum and Aspergillus spp. Braz. J. Microbiol., 45, 523-531, 2014.

 

Singla, A.K.; Gurram, R.K.; Chauhan, A.; Khatri, N.; Vohra, R.M.; Jolly, R.S. and Agrewala, J.N.

Cerulomycin A: a potent novel immunosuppressive agent. Transplantation., 97,e57-59, 2014.

 

Sonkusre, P.; Nanduri, R.; Gupta, P. and Cameotra, S.S.

Improved Extraction of Intracellular Biogenic Selenium Nanoparticles and their Specificity for Cancer Chemoprevention. J. Nanomed. Nanotechnol., 5, 194, 2014.
 
Khatri, N.; Sagar, A.; Peddada, N.; Choudhary, V.; Chopra, B.S.; Garg, V.; Garg, R. and Ashish.
Plasma Gelsolin Levels Decrease in Diabetic State and Increase upon Treatment with F-Actin Depolymerizing Versions of Gelsolin. Journal of Diabetes Research., 8, 2014.

 

PUBLICATIONS DURING 2013

 

Singh, M.; Kumar, P.; Yadav, S.; Gautam, R.; Sharma, N. and Karthikeyan, S.

The crystal structure reveals the molecular mechanism of bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II (Rv1415) from Mycobacterium tuberculosis. Acta Crystallogr. Sect. D-Biol. Crystallogr. Ann. Microbiol., 69, 1633-1644, 2013.

 

Mangal, M.; Sagar, P.; Singh, H.; Raghava, G.P.S. and Agarwal, S.M.

NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database. Nucleic Acids Res., 41, D1124- D1129, 2013.

 

Davidge, K.S. and Dikshit, K.L.

Haemoglobins of Mycobacteria: Structural Features and Biological Functions. Adv.Microb.Physiol. 63, 147-194, 2013.

 

Chodisetti, S.B.; Jain, S. and Agrewala, J.

Cooperation of CD86 signaling with TLR-2 in the activation of resting B cells: a novel BCR independent pathway of stimulating B cells (P1126). J. Immunol., 190, 2013.

 

Khan, N. and Agrewala, J.N.

Immunomodulation through CD40 and TLR-4: an approach to control tuberculosis. J. Immunol., 190, 2013.

 

Arif, E.; Mallik, L.; Rathore, Y.S.; Kumari, B.; Ostap, M.; Ashish, F.N.U.; Holzman, L.B. and Nihalani, D.

Myo1c, an unconventional motor that maintains glomerular filtration function. Faseb J., 27, 2013.

 

Chopra, A.; Tuteja, S.; Sachdeva, N.; Bhasin, K.K.; Bhalla, V. and Suri, C.R.

CdTe nanobioprobe based optoelectrochemical immunodetection of diabetic marker HbA1c. Biosens. Bioelectron., 44, 132-135, 2013.

 

Sharma, P.; Tuteja, S.K.; Bhalla, V.; Shekhawat, G.; Dravid, V.P. and Suri, C.R.

Bio-functionalized graphene-graphene oxide nanocomposite based electrochemical immunosensing. Biosens. Bioelectron. 39, 99-105, 2013.

 

Tuli, A.; Thiery, J.; James, A.M.; Michelet, X.; Sharma, M.; Garg, S.; Sanborn, K.B.; Orange, J.S.; Lieberman, J. and Brenner, M.B.

Arf-like GTPase Arl8b regulates lytic granule polarization and natural killer cell-mediated cytotoxicity, Mol. Biol. Cell, 24, 3721-3735, 2013.

 

Sharma, G.; Kumar, N.; Weir, B.S.; Hyde, K.D. and Shenoy, B.D.

The ApMat marker can resolve Colletotrichum species: a case study with Mangifera indica. Fungal Divers, 61, 117-138, 2013.

 

Pal, S.; Choudhary, V.; Kumar, A.; Biswas, D.; Mondal, A.K. and Sahoo, D.K.

Studies on xylitol production by metabolic pathway engineered Debaryomyces hansenii. Bioresour. Technol., 147, 449-455, 2013.

 

Malhotra, A.; Dolma, K.; Kaur, N.; Rathore, Y.S.; Ashish; Mayilraj, S. and Choudhury, A.R.

Biosynthesis of gold and silver nanoparticles using a novel marine strain of Stenotrophomonas. Bioresour. Technol., 142, 727-731, 2013.

 

Srinivasan, V.B. and Rajamohan, G.

KpnEF, a New Member of the Klebsiella pneumoniae Cell Envelope Stress Response Regulon, Is an SMR-Type Efflux Pump Involved in Broad-Spectrum Antimicrobial Resistance. Antimicrob. Agents Chemother., 57, 4449-4462, 2013. (IF 4.841)

 

Agarwal, S.; Rastogi, R.; Gupta, D.; Patel, N.; Raje, M. and Mukhopadhyay, A.

Clathrin-mediated hemoglobin endocytosis is essential for survival of Leishmania. Biochim. Biophys. Acta-Mol. Cell Res., 1833, 1065-1077, 2013.

 

Yi, H.; Dey, S.; Kumaran, S.; Lee, S.G.; Krishnan, H.B. and Jez, J.M.

Structure of Soybean Serine Acetyltransferase and Formation of the Cysteine Regulatory Complex as a Molecular Chaperone. J. Biol. Chem., 288, 36463 – 36472, 2013.

 

Arya, S.; Sethi, D.; Singh, S.; Hade, M.D.; Singh, V.; Raju, P.; Chodisetti, S.B.; Verma, D.; Varshney, G.C.; Agrewala, J.N. and Dikshit, K.L.

Truncated Hemoglobin, HbN, Is Post-translationally Modified in Mycobacterium tuberculosis and Modulates Host-Pathogen Interactions during Intracellular Infection. J. Biol. Chem., 288, 29987-29999, 2013.

 

Das, A.K.; Kumar, V.A.; Sevalkar, R.R.; Bansal, R. and Sarkar, D.

Unique N-terminal Arm of Mycobacterium tuberculosis PhoP Protein Plays an Unusual Role in Its Regulatory Function. J. Biol. Chem., 288, 29182-29192, 2013.

 

Peddada, N.; Sagar, A.; Rathore, Y.S.; Choudhary, V.; Pattnaik, U.B.K.; Khatri, N.; Garg, R. and Ashish.

Global Shapes of F-actin Depolymerization-competent Minimal Gelsolins INSIGHT INTO THE ROLE OF g2-g3 LINKER IN pH/Ca2+ INSENSITIVITY OF THE FIRST HALF. J. Biol. Chem., 288, 28266-28282, 2013.

 

Ramesh, M.; Bharatam, P.V.; Venugopalan, P. and Kishore, R.

Importance of C-H center dot center dot center dot O Intramolecular Hydrogen Bonding Across a Nonproteinogenic gamma-Aminobenzoic Acid Residue: Stabilization of a Flat beta-Strand-like Template. Cryst. Growth Des., 13, 2004-2012, 2013.

 

Kumar, S.; Kasturia, N.; Sharma, A.; Datt, M. and Bachhawat, A.K.

Redox-dependent stability of the gamma-glutamylcysteine synthetase enzyme of Escherichia coli: a novel means of redox regulation. Biochem. J., 449, 783-794, 2013.

 

Chandra, V.; Mahajan, S.; Saini, A.; Dkhar, H.K.; Nanduri, R.; Raj, E.B.; Kumar, A. and Gupta, P.

Human IL10 Gene Repression by Rev-erb alpha Ameliorates Mycobacterium tuberculosis Clearance. J. Biol. Chem., 288, 10692-10702, 2013.

 

Sharma, P.; Kukkar, M.; Ganguli, A.K.; Bhasin, A. and Suri, C.R.

Plasmon enhanced fluoro-immunoassay using egg yolk antibodies for ultra-sensitive detection of herbicide diuron. Analyst, 138, 4312-4320, 2013.

 

Sablok, K.; Bhalla, V.; Sharma, P.; Kaushal, R.; Chaudhary, S. and Suri, C.R. Amine functionalized graphene oxide/CNT nanocomposite for ultrasensitive electrochemical detection of trinitrotoluene. J. Hazard. Mater., 248, 322-328, 2013.

 

Vikram, S.; Pandey, J.; Kumar, S. and Raghava, G.P.S.

Genes Involved in Degradation of para-Nitrophenol Are Differentially Arranged in Form of Non-Contiguous Gene Clusters in Burkholderia sp strain SJ98. Plos One., 8, e84766, 2013.

 

Choudhury, A.R.; Bhattacharjee, P. and Prasad, G.S.

Development of Suitable Solvent System for Downstream Processing of Biopolymer Pullulan Using Response Surface Methodology. PLoS One, 8, e77071, 2013.

 

Singh, R.; Rathore, Y.S.; Singh, N.S.; Peddada, N.; Ashish and Raychaudhuri, S.

Substitution of Glutamate Residue by Lysine in the Dimerization Domain Affects DNA Binding Ability of HapR by Inducing Structural Deformity in the DNA Binding Domain. PLoS One, 8, e76033, 2013.

 

Gupta, S.; Kapoor, P.; Chaudhary, K.; Gautam, A.; Kumar, R. and Raghava, G.P.S.

In Silico Approach for Predicting Toxicity of Peptides and Proteins. PLoS One, 8, e73957, 2013.

 

Hoque, M.; Dave, S.; Gupta, P. and Saleemuddin, M.

Oleic Acid May Be the Key Contributor in the BAMLET-Induced Erythrocyte Hemolysis and Tumoricidal Action. PLoS One, 8, 2013.

 

Kumar, S.; Vikram, S. and Raghava, G.P.S.

Genome Annotation of Burkholderia sp SJ98 with Special Focus on Chemotaxis Genes. PLoS One, 8, e70624, 2013.

 

Chauhan, J.S.; Rao, A. and Raghava, G.P.S.

In silico Platform for Prediction of N-, O- and C-Glycosites in Eukaryotic Protein Sequences. PLoS One, 8, e67008, 2013.

 

Singh, H.; Ansari, H.R. and Raghava, G.P.S.

Improved Method for Linear B-Cell Epitope Prediction Using Antigen's Primary Sequence. PLoS One, 8, e62216, 2013.

 

Kumar, R. and Raghava, G.P.S.

Hybrid Approach for Predicting Coreceptor Used by HIV-1 from Its V3 Loop Amino Acid Sequence. PLoS One, 8, e61437, 2013.

 

Jain, S.; Chodisetti, S.B. and Agrewala, J.N.

Combinatorial Signaling through TLR-2 and CD86 Augments Activation and Differentiation of Resting B Cells. PLoS One, 8, e54392.

 

Qureshi, A.; Thakur, N. and Kumar, M.

HIPdb: A Database of Experimentally Validated HIV Inhibiting Peptides. PLoS One, 8, e54908, 2013.

 

Dhanda, S.K.; Vir, P. and Raghava, G.P.S.

Designing of interferon-gamma inducing MHC class-II binders. Biol. Direct, 8, 30, 2013.

 

Dhanda, S.K.; Singla, D.; Mondal, A.K. and Raghava, G.P.S.

DrugMint: a webserver for predicting and designing of drug-like molecules. Biol. Direct, 8, 28, 2013.

 

Gupta, S.; Ansari, H.R.; Gautam, A. and Raghava, G.P.S.

Identification of B-cell epitopes in an antigen for inducing specific class of antibodies Biol. Direct, 8, 27, 2013.

 

Sheokand, N.; Kumar, S.; Malhotra, H.; Tillu, V.; Raje, C.I. and Raje, M.

Secreted glyceraldehye-3-phosphate dehydrogenase is a multifunctional autocrine transferrin receptor for cellular iron acquisition. Biochim. Biophys. Acta-Gen. Subj., 1830, 3816-3827, 2013.

 

Dhaunta, N.; Arora, K.; Chandrayan, S.K. and Guptasarma, P.

Introduction of a thermophile-sourced ion pair network in the fourth beta/alpha unit of a psychophile-derived triosephosphate isomerase from Methanococcoides burtonii significantly increases its kinetic thermal stability. BBA-Proteins Proteomics, 1834, 1023-1033, 2013.

 

Singla, D.; Dhanda, S.K.; Chauhan, J.S.; Bhardwaj, A.; Brahmachari, S.K. and Raghava, G.P.S.

Open Source Software and Web Services for Designing Therapeutic Molecules. Curr. Top. Med. Chem., 13, 1172-1191, 2013.

 

Roy, S.K.; Kumari, N.; Gupta, S.; Pahwa, S.; Nandanwar, H. and Jachak, S.M.

7-Hydroxy-(E)-3-phenylmethylene-chroman-4-one analogues as efflux pump inhibitors against Mycobacterium smegmatis mc(2) 155. Eur. J. Med. Chem., 66, 499-507, 2013.

 

Ghosh, M.; Solanki, A.K.; Roy, K.; Dhoke., R.R.; Ashish and Roy, S.

Carrier protein influences immunodominance of a known epitope: Implication in peptide vaccine design. Vaccine, 31, 4682-4688, 2013.

 

Sharma, N.; Prasad, G.S. and Choudhury, A.R.

Utilization of corn steep liquor for biosynthesis of pullulan, an important exopolysaccharide. Carbohydr. Polym., 93, 95-101, 2013.

 

Qureshi, A.; Thakur, N. and Kumar, M.

VIRsiRNApred: a web server for predicting inhibition efficacy of siRNAs targeting human viruses. J. Transl. Med., 11, 305, 2013.

 

Gautam, A.; Chaudhary, K.; Kumar, R.; Sharma, A.; Kapoor, P.; Tyagi, A. and Raghava, G.P.S.

In silico approaches for designing highly effective cell penetrating peptides. J. Transl. Med., 11, 74, 2013.

 

Ferrolino, M.C.; Zhuravleva, A.; Budyak, I.L.; Krishnan, B. and Gierasch, L.M.

Delicate Balance between Functionally Required Flexibility and Aggregation Risk in a beta-Rich Protein. Biochemistry, 52, 8843-8854, 2013.

 

Aneja, R.; Datt, M.; Yadav, S. and Sahni, G

Multiple Exosites Distributed across the Three Domains of Streptokinase Co-Operate to Generate High Catalytic Rates in the Streptokinase-Plasmin Activator Complex, Biochemistry, 52, 8957-8968, 2013.

 

Kumar, P.A.; Bhumika, V.; Ritika, C.; Bhaskar, Y.V.; Priyashanth, P.; Aravind, R.; Bindu, E. and Srinivas, T.N.R.

Algoriphagus shivajiensis sp nov., isolated from Cochin back water, India. Syst. Appl. Microbiol., 36, 106-111, 2013.

 

Krishnamurthi, S. and Chakrabarti, T.

Diversity of Bacteria and Archaea from a landfill in Chandigarh, India as revealed by culture-dependent and culture-independent molecular approaches. Syst. Appl. Microbiol., 36, 56-68, 2013.

 

Srinivas, T.N.R.; Bhaskar, Y.V.; Bhumika, V. and Kumar, P.A.

Photobacterium marinum sp nov., a marine bacterium isolated from a sediment sample from Palk Bay, India. Syst. Appl. Microbiol., 36, 160-165, 2013.

 

Singh, M.; Kumar, P. and Karthikeyan, S.

Structural basis for pH dependent monomer-dimer transition of 3,4-dihydroxy 2-butanone-4-phosphate synthase domain from Mycobacterium tuberculosis. J. Struct. Biol., 181, 307, 2013.

 

Bhatia, P.; Aureli, F.; D'Amato, M.; Prakash, R.; Cameotra, S.S.; Nagaraja, T.P. and Cubadda, F.

Selenium bioaccessibility and speciation in biofortified Pleurotus mushrooms grown on selenium-rich agricultural residues. Food Chem., 140, 225-230, 2013.

 

Singla, D.; Tewari, R.; Kumar, A. and Raghava, G.P.S.

Designing of inhibitors against drug tolerant Mycobacterium tuberculosis (H37Rv). Chem. Cent. J., 7, 49, 2013.

 

Dhanda, S.K.; Gupta, S.; Vir, P. and Raghava, G.P.S.

Prediction of IL4 Inducing Peptides. Clin. Dev. Immunol., 263952, 2013.

 

Mandal, S.M.; Sharma, S.; Pinnaka, A.K.; Kumari, A. and Korpole, S.

Isolation and characterization of diverse antimicrobial lipopeptides produced by Citrobacter and Enterobacter. BMC Microbiol., 13, 152, 2013.

 

Mohindra, V. Tripathi, R.K.; Singh, A. and Singh, B.

Molecular characterization and expression analysis of a novel cystatin-like gene in a hypoxia-tolerant Indian catfish, Clarias batrachus [Linnaeus, 1758]. Fish Shellfish Immunol., 34, 683-687, 2013.

 

Kaur, R, and Kishore, R.

Isostructural unbranched alkyl-chains as tools for stabilizing -turn structure. Biopolymers, 99, 419-426, 2013.

 

Sharma, D.R.; Wani, W.Y.; Sunkaria, A.; Kandimalla, R.J.L.; Verma, D.; Cameotra, S.S. and Gill, K.D.

Quercetin Protects Against Chronic Aluminum-Induced Oxidative Stress and Ensuing Biochemical, Cholinergic, and Neurobehavioral Impairments in Rats. Neurotox. Res., 23, 336-357, 2013.

 

Iquebal, M.A.; Sarika; Dhanda, S.K.; Arora, V.; Dixit, S.P.; Raghava, G.P.S.; Rai, A. and Kumar, D.

Development of a model webserver for breed identification using microsatellite DNA marker. BMC Genet., 14, 118, 2013.

 

Ahmed, F.; Kaundal, R. and Raghava, G.P.S.

PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. BMC Bioinformatics, 14, S9, 2013.

 

Panwar, B.; Gupta, S. and Raghava, G.P.S.

Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information. BMC Bioinformatics, 14, 44, 2013.

 

Khatri, I.; Akhtar, A.; Kaur, K.; Tomar, R.; Prasad, G.S.; Ramya, T.N.C. and Subramanian, S.

Gleaning evolutionary insights from the genome sequence of a probiotic yeast Saccharomyces boulardii Gut Pathogens, 5, 30, 2013.

 

Khatri, I.; Mahajan, S.; Dureja, C.; Subramanian, S. and Raychaudhuri, S.

Evidence of a new metabolic capacity in an emerging diarrheal pathogen: lessons from the draft genomes of Vibrio fluvialis strains PG41 and I21563. Gut Pathogens, 5, 20, 2013.

 

Jain, R.; Sharma, D. and Kumar, R.

Effects of alcohols on the stability and low-frequency local motions that control the slow changes in structural dynamics of ferrocytochrome c. J. Biochem., 154, 341-354, 2013.

 

Singh, A.K. and Cameotra, S.S.

Efficiency of lipopeptide biosurfactants in removal of petroleum hydrocarbons and heavy metals from contaminated soil. Environ. Sci. Pollut. Res., 20, 7367-7376, 2013.

 

Lohan, S.; Cameotra, S.S. and Bisht, G.S.

Systematic Study of Non-Natural Short Cationic Lipopeptides as Novel Broad-Spectrum Antimicrobial Agents Chem. Biol. Drug Des., 82, 557-566, 2013.

 

Ansari, M.A.; Khan, H.M.; Khan, A.A.; Pal, R. and Cameotra, S.S.

Antibacterial potential of Al2O3 nanoparticles against multidrug resistance strains of Staphylococcus aureus isolated from skin exudates. J. Nanopart. Res., 15,10, 2013.

 

Randhawa, A. and Mondal, A.K.

The sixth HAMP domain negatively regulates the activity of the group III HHK containing seven HAMP domains. Biochem. Biophys. Res. Commun., 438, 140-144, 2013.

 

Sagar, A.; Peddada, N.; Solanki, A.K.; Choudhary, V.; Garg, R. and Ashish

Visualizing the elusive open shape of G-actin in solution by SAXS data analysis. Biochem. Biophys. Res. Commun., 435, 740-744, 2013.

 

Cameotra, S.S.

Can microbes be patented? Biochem. Biophys. Res. Commun., 430, 448, 2013.

 

Gupta, V.; Prasanna, R.; Cameotra, S.S.; Dureja, P.; Singh, R.N. and Sharma, J.

Enhancing the production of an antifungal compound from Anabaena laxa through modulation of environmental conditions and its characterization. Process Biochem., 48, 768-774, 2013.

 

Tripathi, R.; Kaithwas, V.; Dureja, C. and Raychaudhuri, S.

Alanine-scanning mutagenesis of WH2 domains of VopF reveals residues important for conferring lethality in a Saccharomyces cerevisiae model. Gene, 525, 116-123, 2013.

 

Nupur; Bhumika, V.; Srinivas, T.N.R. and Kumar, P.A.

Flavobacterium nitratireducens sp nov., an amylolytic bacterium of the family Flavobacteriaceae isolated from coastal surface seawater. Int. J. Syst. Evol. Microbiol., 63, 2490-2496, 2013.

 

Bhumika, V.; Srinivas, T.N.R.; Ravinder, K. and Kumar, P.A.

Mariniradius saccharolyticus gen. nov., sp nov., a member of the family Cyclobacteriaceae isolated from marine aquaculture pond water, and emended descriptions of the genus Aquiflexum and Aquiflexum balticum. Int. J. Syst. Evol. Microbiol., 63, 2088-2094, 2013.

 

Krishnamurthi, S.; Spring, S.; Kumar, P.A.; Mayilraj, S.; Klenk, H.P. and Suresh, K.

Desulfotomaculum defluvii sp nov., a sulfate-reducing bacterium isolated from the subsurface environment of a landfill. Int. J. Syst. Evol. Microbiol., 63, 2290-2295, 2013.

 

Chandna, P; Mayilraj, S; Kuhad, RC

Bacillus paraflexus sp nov., isolated from compost. Int. J. Syst. Evol. Microbiol., 63, 4735-4743, 2013.

 

Singh, A.K.; Garg, N.; Sangwan, N.; Negi, V.; Kumar, R.; Vikram, S. and Lal, R.

Pontibacter ramchanderi sp nov., isolated from hexachlorocyclohexane-contaminated pond sediment. Int. J. Syst. Evol. Microbiol., 63, 2829-2834, 2013.

 

Krishna, K.K.; Bhumika, V.; Thomas, M.; Kumar, P.A. and Srinivas, T.N.R.

Oceanospirillum nioense sp nov., a marine bacterium isolated from sediment sample of Palk bay, India. Antonie Van Leeuwenhoek, 103, 1015-1021, 2013.

 

Singh, N.K.; Raichand, R.; Kaur, I.; Kaur, C.; Pareek, S. and Mayilraj, S. Exiguobacterium himgiriensis sp nov a novel member of the genus Exiguobacterium, isolated from the Indian Himalayas. Antonie Van Leeuwenhoek, 103, 789-796, 2013.

 

Rakshak, K.; Ravinder, K.; Nupur; Srinivas, T.N.R. and Kumar, P.A.

Caldimonas meghalayensis sp nov., a novel thermophilic betaproteobacterium isolated from a hot spring of Meghalaya in northeast India. Antonie Van Leeuwenhoek, 104, 1217-1225, 2013.

 

Shalley, S.; Kumar, S.P.; Srinivas, T.N.R.; Suresh, K. and Kumar, P.A.

Marinilabilia nitratireducens sp nov., a lipolytic bacterium of the family Marinilabiliaceae isolated from marine solar saltern. Antonie Van Leeuwenhoek, 103, 519-525, 2013.

 

Nupur; Vaidya, B.; Tanuku, N.R.S. and Pinnaka, A.K.

Albirhodobacter marinus gen. nov., sp nov., a member of the family Rhodobacteraceae isolated from sea shore water of Visakhapatnam, India. Antonie Van Leeuwenhoek, 103, 347-355, 2013.

 

Gowthaman, U.; Rai, P.K.; Zeng, W.G.; Jackson, D.C. and Agrewala, J.N.

Lipidated promiscuous peptide augments the expression of MHC-II molecules on dendritic cells and activates T cells. Indian J. Med. Res., 138, 744-748, 2013. (IF 2.061)

 

Palaniappan, K.; Meier-Kolthoff, J.P.; Teshima, H.; Nolan, M.; Lapidus, A.; Tice, H.; Del Rio, T.G.; Cheng, J.F.; Han, C.; Tapia, R.; Goodwin, L.A.; Pitluck, S.; Liolios, K.; Mavromatis, K.; Pagani, I.; Ivanova, N.; Mikhailova, N.; Pati, A.; Chen, A.; Rohde, M.; Mayilraj, S.; Spring, S.; Detter, J.C.; Goker, M.; Bristow, J.; Eisen, J.A.; Markowitz, V.; Hugenholtz, P.; Kyrpides, N.C.; Klenk, H.P. and Woyke, T.

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio. Stand. Genomic Sci., 9, 57-70, 2013.

 

Singh, A.K. and Cameotra, S.S.

Rhamnolipids Production by Multi-metal-Resistant and Plant-Growth-Promoting Rhizobacteria. Appl. Biochem. Biotechnol., 170, 1038-1056, 2013.

 

Nandanwar, H.S.; Vohra, R.M. and Hoondal, G.S.

Enhanced stability of newly isolated trimeric l-methionine-N-carbamoylase from Brevibacillus reuszeri HSN1 by covalent immobilization. Biotechnol. Appl. Biochem., 60, 305-315, 2013.

 

Singh, N.; Pemmaraju, S.C.; Pruthi, P.A.; Cameotra, S.S. and Pruthi, V.

Candida Biofilm Disrupting Ability of Di-rhamnolipid (RL-2) Produced from Pseudomonas aeruginosa DSVP20. Appl. Biochem. Biotechnol., 169, 2374-2391, 2013.

 

Sachdev, D.P. and Cameotra, S.S.

Biosurfactants in agriculture. Appl. Microbiol. Biotechnol., 97, 1005-1016, 2013.

 

Biswas, D.; Datt, M.; Aggarwal, M. and Mondal, A.K.

Molecular cloning, characterization, and engineering of xylitol dehydrogenase from Debaryomyces hansenii. Appl. Microbiol. Biotechnol., 97, 1613-1623, 2013.

 

Nandanwar, H.S.; Vohra, R.M. and Hoondal, G.S.

Trimeric L-N-carbamoylase from newly isolated Brevibacillus reuszeri HSN1: A potential biocatalyst for production of L-alpha-amino acids. Biotechnol. Appl. Biochem., 60, 219-230, 2013.

 

Thakur, A. and Bachhawat, A.K.

Mutations in the N-terminal region of the Schizosaccharomyces pombe glutathione transporter pgt1+allows functional expression in Saccharomyces cerevisiae. Yeast, 30, 45-54, 2013.

 

Roy, S.K.; Kumari, N.; Pahwa, S.; Agrahari, U.C.; Bhutani, K.K.; Jachak, S.M. and Nandanwar, H.

NorA efflux pump inhibitory activity of coumarins from Mesua ferrea. Fitoterapia, 90, 140-150, 2013.

 

Arora, P.K.

Staphylococcus lipolyticus sp nov., a new cold-adapted lipase producing marine species. Ann. Microbiol., 63, 913-922, 2013.

 

Prakash, D.; Gabani, P.; Chandel, A.K.; Ronen, Z. and Singh, O.V.

Bioremediation: a genuine technology to remediate radionuclides from the environment. Microb. Biotechnol.,6, 349-360, 2013.

 

Venugopalan, P. and Kishore, R.

Unusual Folding Propensity of an Unsubstituted ,-Hybrid Model Peptide: Importance of the CHO Intramolecular Hydrogen Bond. Chem.-Eur. J., 19, 9908-9915, 2013.

 

Nandanwar, H.S.; Prajapati, R. and Hoondal, G.S.

(D)-p-Hydroxyphenylglycine production by thermostable D-hydantoinase from Brevibacillus parabrevis-PHG1. Biocatal. Biotransform., 31, 22-32, 2013.

 

Ratakonda, S.; Anand, A.; Dikshit, K.; Stark, B.C. and Howard, A.J.

Crystallographic structure determination of B10 mutants of Vitreoscilla hemoglobin: role of Tyr29 (B10) in the structure of the ligand-binding site. Acta Crystallogr. F-Struct. Biol. Cryst. Commun., 69, 215-222, 2013.

 

Tyagi, A.; Kapoor, P.; Kumar, R.; Chaudhary, K.; Gautam, A. and Raghava, G.P.S.

In Silico Models for Designing and Discovering Novel Anticancer Peptides Sci. Rep., 3, 2984, 2013.

 

Sharma, A.; Kapoor, P.; Gautam, A.; Chaudhary, K.; Kumar, R.; Chauhan, J.S.; Tyagi, A. and Raghava, G.P.S.

Computational approach for designing tumor homing peptides. Sci. Rep., 3, 1607, 2013.

 

Kumar, R.; Chaudhary, K.; Gupta, S.; Singh, H.; Kumar, S.; Gautam, A.; Kapoor, P. and Raghava, G.P.S.

CancerDR: Cancer Drug Resistance Database. Sci. Rep., 3, 1445, 2013.

 

Roy, A.; Mahata, D.; Paul, D.; Korpole, S.; Franco, O.L. and Mandal, S.M.

Purification, biochemical characterization and self-assembled structure of a fengycin-like an fungal peptide from Bacillus thuringiensis strain SM1. Front. Microbiol., 4, 332, 2013.

 

Bhartiya, D.; Pal, K.; Ghosh, S.; Kapoor, S.; Jalali, S.; Panwar, B.; Jain, S.; Sati, S.; Sengupta, S.; Sachidanandan, C.; Raghava, G.P.S.; Sivasubbu, S. and Scaria, V.

lncRNome: a comprehensive knowledgebase of human long noncoding RNAs. Database, bat034, 2013.

 

Srinivasan, V.B.; Mondal, A.; Venkataramaiah, M.; Chauhan, N.K. and Rajamohan, G.

Role of oxyR(KP), a novel LysR-family transcriptional regulator, in antimicrobial resistance and virulence in Klebsiella pneumoniae. Microbiology-(UK), 159, 1301-1314, 2013 

 

PUBLICATIONS DURING 2012

 

Dutta, R.K.; Kathania, M.; Raje, M. and Majumdar, S.

IL-6 inhibits IFN-n induced autophagy in Mycobacterium tuberculosis H37Rv infected macrophages. Int. J. Biochem. Cell. Biol., 44, 942-954, 2012. 


Khan, M.A.; Gahlot, S. and Majumdar, S.

Oxidative stress induced by curcumin promotes the death of Cutaneous T cell Iymphoma (HuT-78) by disrupting the function of several molecular targets. Molecular Cancer Therapeutics, 11, 1873-1883, 2012.

 

Bhat, S.A.; Singh, N.; Trivedi, A.; Kansal, P.; Gupta, P. and Kumar, A.

The mechanism of redox sensing in Mycobacterium tuberculosis. Free Radic Biol Med. 5, 1625-1641, 2012.


Trivedi, A.; Singh, N.; Bhat, S.A.; Gupta, P. and Kumar Ashwani

Redox biology of tuberculosis pathogenesis. Advances in Microbial Physiology. 60, 263-324, 2012.


Farhana, A.; Saini, V.; Kumar, A.;  Lancaster, J. and Steyn, A.J.

Environmental heme-based sensor proteins: Implications for understanding bacterial pathogenesis. Antioxidants & Redox Signaling. 17, 1232-1245, 2012. 

 

Aithal, A.; Sharma,  A.; Joshi, S.; Raghava, G.P.S. and  Varshney, G.C.

PolysacDB: a database of microbial polysaccharide antigens and their antibodies. PLoS One., 7 :e34613, 2012 

 

Sekhon, K. K.; Khanna, S. and Cameotra, S.S.

Biosurfactant Production and Potential Correlation with Esterase Activity. J. Pet. Environ. Biotechnol. 3: 7, 2012


Khatri, N.; Khatri, I.; Subramanian, S. and Raychaudhuri. S.

Ethanolamine utilization in Vibrio alginolyticus. Biol. Direct., 12;7:45, 2012.

 

Srinivasan, V.B.; Vaidyanathan, V.; Mondal, A.; Venkataramaiah, M. and Rajamohan, G.
Functional characterization of a novel  outer membrane porin kpno, regulated by PhoBR two-component system in klebsiella pneumoniae NTUH-K2044. PLoS One, 7, e41505, 2012

 

Singh, V.; Ekka, M.K. and Kumaran, S.
Second monomer binding is the rate-limiting step in the formation of the dimeric PhoP-DNA complex. Biochemistry,  51, 1346-1356, 2012.

Anand, S.; Singh, V.; Singh, A.K.; Mittal, M.;  Datt M.; Subramani, B. and Kumaran, S.
Equilibrium binding and kinetic characterization of putative tetracycline repressor family transcription regulator Fad35R from Mycobacterium tuberculosis. FEBS J. 279, 3214-3228, 2012.

 

Mahajan, S.; Dkhar, H.K.; Chandra, V.; Dave, S.; Nanduri, R.; Janmeja, A.K. and Agrewala, J.N. Gupta P.

Mycobacterium tuberculosis modulates macrophage lipid-sensing nuclear receptors PPARγ and TR4 for survival. J Immunol. 188, 5593-5603, 2012. 

 

Singh, P.K.; Chittpurna; Ashish; Sharma, V.; Patil, P.B. and Korpole, S. Identification, Purification and Characterization of Laterosporulin, a Novel Bacteriocin Produced by Brevibacillus sp. Strain GI-9. PLoS One, 7, e31498, 2012.


Sharma, V.; Singh, P.K.; Midha, S.; Ranjan, M.; Korpole, S. and Patil, P.B.
Genome sequence of Brevibacillus laterosporus Strain GI-9.  J. Bacteriol. 194, 1279, 2012.

Midha, S.; Sharma, V.; Ranjan, M.; Pinnaka, A.K. and Patil, P.B.
Genome sequence of Xanthomonas axonopodis pv. punicae Strain LMG 859.  J. Bacteriol. 194:2395, 2012.

Midha, S.; Sharma, V.; Ranjan, M.; Pinnaka, A.K. and Patil, P.B.
Genome sequence of Xanthomonas citri pv. mangiferaeindicae Strain LMG 941. J. Bacteriol. 194: 3031, 2012.

Midha, S.;  Ranjan, M.; Sharma, V.; Kumari, A.; Singh, P.K.; Korpole, S. and Patil, P.B.  Genome Sequence of Pediococcus pentosaceus Strain IE-3. J. Bacteriol. 194:4468, 2012.

Gupta, S.; Goyal, R.; Nirwan, J.; Cameotra, S.S. and Tejoprakash, N.
Biosequestration, transformation, and volatilization of mercury by Lysinibacillus fusiformis isolated from industrial effluent. J. Microbiol. Biotechnol. 22, 684-689, 2012.

Pemmaraju, S.C; Sharma, D; Singh, N; Panwar, R.; Cameotra,S.S.and Pruthi, S.
Production of Microbial Surfactants from Oily Sludge-Contaminated Soil by Bacillus subtilis DSVP23. Appl. Biochem. Biotechnol. 167, 1119-1131, 2012.

 

Roy Choudhury, A.Sharma, N. and  Prasad, G.S.

Deoiled jatropha seed cake is a useful nutrient for pullulan production. Microbial Cell Factories. 11:39, 2012. 

 

Aithal, A.; Sharma,  A.; Joshi, S.; Raghava, G.P.S. and  Varshney, G.C.
PolysacDB: a database of microbial polysaccharide antigens and their antibodies. PLoS One., 7 :e34613, 2012

 

Kumar,S.; Vikram,S. and Raghava, G.P.S.
Genome Sequence of the Nitroaromatic Compound-Degrading Bacterium Burkholderia sp. Strain SJ98. J. Bacteriol., 194 , 12: 3286, 2012.

 

Kumar, S.; Sheokand, N.; Mhadeshwar, M.A.; Raje, C.I. and Raje, M.
Characterization of glyceraldehyde-3-phosphate dehydrogenase as a novel transferrin receptor. Int. J. Biochem. Cell. Biol., 44, 189-199, 2012.

Panwar, B. and Raghava, G.P.S.
Predicting sub-cellular localization of tRNA synthetases from their primary structures. Amino Acids., 42, 1703-1713, 2012

Manickam, N.;  Pareek, S.; Kaur, I.; Singh, N.K. and Mayilraj, S.
Nitratireductor lucknowense sp. nov., a novel bacterium isolated from a pesticide contaminated soil. Antonie van Leeuwenhoek, 101, 125-131, 2012

Bala, M.; Kaur, C.; Kaur, I.; Khan, F. and Mayilraj, S.
Kocuria sediminis sp. nov., isolated from a marine sediment sample. Antonie van Leeuwenhoek. 101, 469-478, 2012.

Gursonika Binepal; Rajiv Kumar Ranjan and Kammara Rajagopal
Expression of synthetic human tumor necrosis factor is toxic to Escherichia coli. Gene., 493, 155-160, 2012

Kumar, A.; Cameotra, S.S. and Gupta, S.
Screening and characterization of potential cadmium biosorbent Alcaligenes strain from industrial effluent. J. Basic Microbiol., 52, 160-166, 2012.

 

Arora, P.K. and Jain, R.K.
Biotransformation of 4-chloro-2-nitrophenol into 5-chloro-2-methylbenzoxazole by a marine Bacillus sp. strain MW-1. Biodegradation. 23, 325-331, 2012.

 

Gupta, S.; Goyal, R.; Nirwan, J.; Cameotra, S.S. and Nagaraja, T.
Biosequestration, Transformation, and Volatilization of Mercury by Lysinibacillus fusiformis Isolated from Industrial Effluent. J. Microbiol. Biotechnol. 22, 684-689, 2012. 

 

Chodisetti, S.B.; Rai, P.K.; Gowthaman, U.; Pahari, S. and  Agrewala, J.N.

Potential T cell epitopes of Mycobacterium tuberculosis that can instigate molecular mimicry against host: implications in autoimmune pathogenesis. BMC Immunol., 13 (1):13, 2012.


Singh, S.; Ashish and Dikshit, K. L.
Pro(42) and Val(45) of staphylokinase modulate intermolecular interactions of His(43)-Tyr(44) pair and specificity of staphylokinase-plasmin activator complex.  FEBS Lett. , 586, 653-658, 2012.
 

Singh H., Chauhan, J.S., Gromiha, M. M., Consortium, OSDD Raghava, G. P. S., ccPDB: compilation and creation of data sets from Protein Data Bank. Nucleic Acids Res, 40, D486-489, 2012. 

 

Kumar, S.; Sheokand, N.; Mhadeshwar, M.A.; Raje, C.I. and Raje, M.

Characterization of glyceraldehyde-3-phosphate dehydrogenase as a novel transferrin receptor. Int. J. Biochem. Cell. Biol. 44, 189-199, 2012

 

Gursonika Binepal; Rajiv Kumar Ranjan and Kammara Rajagopal

Expression of synthetic human tumor necrosis factor is toxic to Escherichia coli. Gene. 493, 155-160, 2012 

 

Bala, M.; Kaur, C.; Kaur, I.; Khan, F. and Mayilraj, S.

Kocuria sediminis sp. nov., isolated from a marine sediment sample. Antonie van Leeuwenhoek . 101, 469-478, 2012. 

 

Manickam, N.;  Pareek, S.; Kaur, I.; Singh, N.K.and Mayilraj, S.

Nitratireductor lucknowense sp. nov., a novel bacterium isolated from a pesticide contaminated soil. Antonie van Leeuwenhoek. 101, 125-131, 2012. 

 

Gosal, S. K.;  Saroa, G.S.; Vikal, Y.;  Cameotra, S.S.;  Pathania, N. and Bhanot, A.

Isolation and molecular characterisation of diazotrophic growth-promoting bacteria from wheat rhizospheric soils of Punjab. Soil Research, 49: 725 - 732, 2012  

 

Dave,S.; Kaur, N.J.; Nanduri, R.; Dkhar, H.K.; Kumar, A. and Gupta, P.

Inhibition of Adipogenesis and Induction of Apoptosis and Lipolysis by Stem Bromelain in 3T3-L1 Adipocytes. PLoS one, 7, e30831, 2012.

 

Ghosh, S.; Patil, S.; Ahire, M.; Kitture, R.; Kale, S.; Pardesi, K.; Cameotra, S.S.; Bellare, J.; Dhavale, D.D.; Jabgunde, A. and Chopade, B.A.

Synthesis of silver nanoparticles using Dioscorea bulbifera tuber extract and evaluation of its synergistic potential in combination with antimicrobial agents. Int. J. Nanomedicine. 7 483 – 496, 2012.

 

Joshi, K.K.; Nanda, J.S.; Kumar, P. and Sahni, G.
Substrate kringle-mediated catalysis by the streptokinase-plasmin activator complex: Critical contribution of kringle-4 revealed by the mutagenesis approaches. Biochim Biophys Acta., 1824, 326-333, 2012.

 
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