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IN PRESS

 

Kumar, R.; Chaudhary, K.; Sharma, M.; Nagpal, G.; Chauhan, J.S.; Singh, S.; Gautam, A. and Raghava, G.P.S.
AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. Nucleic Acids Res. 

Tyagi, A.; Tuknait, A.; Anand, P.; Gupta, S.; Sharma, M.; Mathur, D.; Joshi, A.; Singh, S.; Gautam, A. and Raghava, G.P.S.
CancerPPD: a database of anticancer peptides and proteins.  Nucleic Acids Res., 2014. 

Tomar, R.; Sharma, P.; Srivastava, A.; Bansal, S.; Ashish and Kundu, B.
Structural and functional insights into an archaealL-asparaginase obtained through the linker-less assembly of constituent domains. Acta Crystallogr. D Biol. Crystallogr., 2014. 

Singh, N. and Kumar, A.
Virulence factor SenX3 is the oxygen-controlled replication  switch of Mycobacterium tuberculosis. Antioxidants and Redox Signalling., 2014.

Gowthaman, U.; Mushtaq, K.; Tan, A.C.; Rai, P.K.; Jackson, D.C. and Agrewala, J.N.
Challenges and solutions for a rational vaccine design for TB-endemic regions. Crit. Rev. Microbiol., 2014. 

Mahajan, S.; Saini, A.; Kalra, R. and Gupta, P.
Frienemies of infection: A chronic case of host nuclear receptors acting as cohorts or combatants of infection. Crit. Rev. Microbiol., 2014. 

Chodisetti, S.B.; Gowthaman, U.; Rai, P.K.; Vidyarthi, A.; Khan, N. and Agrewala, J.N.
Triggering Through Toll-like Receptor 2 Limits Chronically Stimulated T-helper Type 1 Cells From Undergoing Exhaustion. J. Infect. Dis. .

Chopra, L.; Singh, G.; Jena, K.K.; Verma, H. and Sahoo, D.K.
 2014. Bioprocess     development for the production of sonorensin by Bacillus sonorensis MT93 and     its application as a food preservative. Bioresource Technology, 2014. .

Suneet Kaur, Gautam Srivastava, R. N. Sharma and Ravinder S. Jolly
immunosuppressive agent Caerulomycin A exerts its effect by depleting cellular iron content. British Journal of Pharmacology 

Dkhar, H.K.; Gopalsamy, A.; Loharch, S.; Kaur, A.; Bhutani, I.; Saminathan, K.; Bhagyaraj, E.; Chandra, V.; Swaminathan, K.; Agrawal, P.; Parkesh, R. and Gupta, P.
Discovery of Mycobacterium tuberculosis α-1,4-glucan branching enzyme (GlgB) inhibitors by structure and ligand based virtual screening. J. Biol. Chem., 2014. 

Solanki, A.K.; Rathore, Y.S.; Badmalia, M.D.; Dhoke, R.R.; Nath, S.K.; Nihalani, D. and Ashish.
Global shape and ligand binding efficiency of the HIV-1 neutralizing antibodies differs from the ones which cannot neutralize. J. Biol. Chem., 2014. 

Solanki, A.K.; Rathore, Y.S.; Badmalia, M.D.; Dhoke, R.R.; Nath, S.K.; Nihalani, D. and Ashish.
Global shape and ligand binding efficiency of the HIV-1 neutralizing antibodies differs from the ones which cannot neutralize. J. Biol. Chem., 2014. 

Loharch, S.; Isha.; Jain, K.; Gupta, P.; Sahoo, D.K. and  Parkesh, R.
EpiDBase:a manually curated database of epigenetic landscape. Database, 2014.

Gautam, A.; Sharma, M.; Vir, P.; Chaudhary, K.; Kapoor, P.; Kumar, R.; Nath, S.K. and Raghava, G.P.S.
Identification and characterization of novel protein derived arginine-rich cell penetrating peptides. Eur. J. Pharm. Biopharm., 2014. 

Mehta, D.; Anand, P.; Kumar, V.; Joshi, A.; Mathur, D.; Singh, S.; Tuknait, A.; Chaudhary, K.; Gautam, S.K.; Gautam, A.; Varshney, G.C. and Raghava, G.P.S.
ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures. Database (Oxford)., 2014. 

Das, S.; Ghosh, A.K.; Singh, S.; Saha, B.; Ashish and Das, P.
UnmethylatedCpG-motifs in the L. donovani DNA regulate TLR9-dependent delay of programmed cell death in macrophages J Leuk Biol., 2014. 

Singh, P.K.; Solanki, V.; Sharma, S.; Thakur, K.G.; Krishnan, B. and Korpole, S.
The intramolecular disulfide-stapled structure of laterosporulin, a class IIdbacteriocin, conceals a human defensin-like structural module. FEBS J., 2014. 

Dureja, C.; Mahajan, S. and Chaudhuri, S.R.
Phylogenetic distribution and prevalence of genes encoding class I integrons and CTX-M-15 extended-spectrum- β-lactamases in Escherichia coli isolates from healthy humans in Chandigarh, India. PLoS One. 

Bhutani, I., Gupta, P.; Madathil, R.; and Parkesh, R.
Structure, dynamics, and interaction of DprE1 and DprE2 examined by molecular modeling, simulation, and electrostatic studies. Plos one. 

Singh, A.K.; Singh, M.; Pandya, V.K.; G .L. B.; Singh, V.; Ekka, M.K.; Mittal, M. and Kumaran, S.
Molecular Basis of Peptide Recognition in Metallopeptidase, Dug1p from Saccharomyces cerevisiae. Biochemistry. 
 
Ishaq, M.; Khan, M.A.; Sharma, K.; Sharma, G.; Dutta, R.K. and Majumdar, S.
Gambogic acid induced oxidative stress dependent caspase activation regulates both apoptosis and autophagy by targeting various key molecules (NF-κB, Beclin-1, p62 and NBR1) in human bladder cancer cells.  Biochim. Biophys. Acta. 

Dhar, J.; Chakrabarti, P.; Saini, H.; Raghava, G.P. and Kishore, R.
ω-Turn: A novel β-turn mimic in globular proteins stabilized by main-chain to side-chain CH···O interaction. Proteins. 

Singh, N.S.; Kachhap, S.; Singh, R.; Mishra, R. C.; Singh B. and Chaudhuri, S.R.
The length of glycine rich linker in DNA binding domain is critical for optimal functioning of quorum sensing master regulatory protein HapR. Mol. Genet. Genomics. 

Singh, P.K.; Sharma, S.; Kumari, A. and Korpole, S.
A non-pediocin low molecular weight antimicrobial peptide produced by Pediococcuspentosaceus strain IE-3 shows increased activity under reducing environment. BMC Microbiol. 

Shukla, A. and Cameotra, S.S.
Atomic Absorption Spectrophotometer: Principle, General description and Applications in Micro and Geo microbiology. Microbiology Applications. 

 

Singh, R.; Anil Kumar, V.; Das, A.K.; Bansal, R. and  Sarkar, D.

A transcriptional co-repressor regulatory circuit controlling the heat-shock response of Mycobacterium tuberculosis. Mol. Microbial.


Tuteja, S.; Sabherwal, P.; Deep, A.; Rastogi, R.; Paul, A. and  Suri, C.R.;

Bio-functionalized rebar graphene (f-RG) for label free detection of cardiac marker troponin I.  ACS Applied Materials and Interfaces. 


Srivastava, G.;   Pal,M.;    Kaur, S. and jolly, R.S. 

A highly efficient designer cell for enantioselective reduction of ketones. Catal. Sci. Technol. 


Ishaq, M.; Khan, M.A.; Sharma, K.; Sharma, G.; Dutta, R.K. and Majumdar, S.

Gambogic acid induced oxidative stress dependent caspase activation regulates both apoptosis and autophagy by targeting various key molecules (NF-κB, Beclin-1, p62 and NBR1) in human bladder cancer cells.  Biochim. Biophys. Acta. 


Sharma, G.; Dutta, R.K.; Khan, M.A.; Ishaq, M.; Sharma, K.; Malhotra, H. and Majumdar, S.

IL-27 inhibits IFN-γ induced autophagy by concomitant induction of JAK/PI3 K/Akt/mTOR cascade and up-regulation of Mcl-1 in Mycobacterium tuberculosis H37Rv infected macrophages. Int. J. Biochem. Cell. Biol. 

 

Malhotra,A.;  Sharma, N.;  Navdezda;  Kumar, N.; Dolma, K.;  Sharma, D.; Nandanwar, H.S.  and Choudhury, A.R.

Multi-analytical approach to understand biomineralization of gold using rice bran: a novel and economical route. RSC Advances.


Sheokand, N.;  Malhotra, H.; Kumar, S.; Tillu, V.A.; Chauhan, A.S.; Raje, C.I. and  Raje M.

Moonlighting cell surface GAPDH recruits Apo Transferrin to effect iron egress from mammalian cells. J. Cell. Sci. 

 

Maurya, N.; Gujar, R.; Gupta, M.; Yadav, V.; Verma, S. and Sen, P.

Immunoregulation of dendritic cells by the receptor T cell immunoglobulin and mucin protein -3 (TIM-3) via bruton’s tyrosine kinase and c-Src. J. Immunol.


Singla, A.K.; Gurram, R.K.; Chauhan, A.;  Khatri, N.; Vohra, R.M.;  Jolly, R.S. and Agrewala, J.N.

Caerulomycin A suppresses immunity by inhibiting T cells activity. PLoS One.

 

Sabherwal, P.; Shorie, M.;  Pathania, P.; Chaudhary, S.; Bhasin, K.; Bhalla, V. and Suri, C.R.

A hybrid aptamer-antibody linked FRET based detection of trinitrotoluene. Analytical Chemistry.

 

Vaishampayan, P.; Roberts, A.;  Augustus,A.;  Pukall, R.; Schumann, P.; schwendner, P.;  Shanmugam, Mayilraj;  Salmassi, T.  and kasthuri Venkateswaran

Deinococcus phoenicis sp. nov., an extreme ionizing radiation resistant bacterium isolated from the Phoenix Lander assembly facility. Int. J. Sys. Evol 

 

Kaur H, Singh S, Rathore YS, Sharma A, Furukawa K, Hohmann S, Fnu A, Mondal AK.

Differential Role of HAMP-like Linkers in Regulating the Functionality of the Group III Histidine Kinase DhNik1p. J. Biol. Chem. 


Gurram RK, Kujur W, Maurya SK, Agrewala JN.

Caerulomycin A enhances the TGF-β-Smad3 signalling by suppressing IFN-γ-STAT1 signalling to expand Tregs. J. Biol. Chem. 


Dkhar HK, Nanduri R, Mahajan S, Dave S, Saini A, Somavarapu AK, Arora A, Parkesh R, Thakur KG,Mayilraj S, Gupta P.

Mycobacterium tuberculosis Keto-Mycolic Acid and Macrophage Nuclear Receptor TR4 Modulate Foamy Biogenesis in Granulomas: A Case of a Heterologous and Noncanonical Ligand-Receptor Pair. J. Immunol. 


Mehta D, Anand P, Kumar V, Joshi A, Mathur D, Singh S, Tuknait A, Chaudhary K, Gautam SK, Gautam A, Varshney GC, Raghava GP.

ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures. Database (Oxford). 


Gowthaman U, Mushtaq K, Tan AC, Rai PK, Jackson DC, Agrewala JN.

Challenges and solutions for a rational vaccine design for TB-endemic regions. Crit. Rev. Microbiol.  


Manickam N, Singh NK, Bajaj A, Kumar RM, Kaur G, Kaur N, Bala M, Kumar A, Mayilraj S.

Bacillus mesophilum sp. nov., strain IITR-54T, a novel 4-chlorobiphenyl dechlorinating bacterium. Arch Microbiol. 


Gautam A, Kapoor P, Chaudhary K, Kumar R, Raghava GP.

Tumor Homing Peptides as Molecular Probes for Cancer Therapeutics, Diagnostics, and Theranostics. Curr. Med. Chem. 


Yadav IS, Singh H, Imran Khan M, Chaudhury A, Raghava GP, Agarwal SM.

EGFRIndb: Epidermal Growth Factor Receptor Inhibitor Database. Anticancer Agents Med Chem. 


Abhay Bajaj, Shanmugam Mayilraj, Mohana Krishna Reddy Mudiam, Devendra Kumar Patel and Natesan Manickam.

Isolation and functional analysis of a glycolipid producing Rhodococcus sp. strain IITR-03 with potential for degradation of 1,1,1-trichloro-2,2-bis (4-chlorophenyl) ethane-DDT.   Bioresource Technol. 


Navjot Kaur., Rajendran Mathan Kumar., Gurwinder Kaur and Shanmugam Mayilraj 

Isoptericola rhizophila sp. nov., a novel actinobacterium isolated from rhizosphere soil. Papers In Press; Antonie van Leeuwenhoek 

 

Gurwinder Kaur, Sathyaseelan Sathyabama, Amit Arora, Sheenam Verma, Nida Mubin, Javed N. Agrewala and Shanmugam Mayilraj (2014). Genome sequencing, annotation and comparative genomic analysis of Shigella dysenteriae strain SD1D. Gut Pathogens


Sathyaseelan Sathyabama, Gurwinder Kaur, Amit Arora, Sheenam Verma, Nida Mubin, Shanmugam Mayilraj and Javed N Agrewala.Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1. Gut Pathogens


Natesan Manickam, Nitin Kumar Singh, Abhay Bajaj, Rajendran Mathan Kumar,Gurwinder Kaur, Navjot Kaur, Monu Bala, Anand Kumar and Shanmugam Mayilraj . Bacillus mesophilum sp. nov., strain IITR‑54T, a novel 4‑chlorobiphenyl dechlorinating bacterium. Archives of Microbiology


Nitin Kumar Singh.,Chandandeep Kaur., Narender Kumar., Subramanian Velmurugan., Thavasimuthu Citarasu and Shanmugam Mayilraj. Bacillus aequororis sp. nov., strain M-8T isolated from marine sediment. Current Microbiology.

 

Nitin Kumar Singh.,Chandandeep Kaur., Narender Kumar., Subramanian Velmurugan., Thavasimuthu Citarasu and Shanmugam Mayilraj 

Bacillus aequororis sp. nov., strain M-8T isolated from marine sediment. Papers In Press, Current Microbiology. 

 

Jain, S.; Chodisetti, S.B. and  Agrewala, J.N.

Correction: Combinatorial Signaling through TLR-2 and CD86 Augments Activation and Differentiation of Resting B Cells. PLoS One.


Anirban Roy Choudhury; Ankit Malhotra; Paramita Bhattacharjee and Prasad, G.S.

Facile and rapid thermo-regulated biomineralization of gold by pullulan and study of its thermodynamic parameters. Carbohydrate Polymers 


Dastager, S.G. Shan-Kun T.; Krishnamurthi S.; Jae-Chan L. and Wen-Jun Li. 

Kocuria indica sp nov., isolated from sediment sample. Int J Syst Evol Microbiol. 

 

Nitin Kumar Singh, Indu Khatri, Srikrishna Subramanian and Shanmugam Mayilraj  Genome sequencing and annotation of Acinetobacter gerneri strain MTCC 9824T.  Elsevier: Genomics Data.
 
Indu Khatri, Nitin Kumar Singh, Srikrishna Subramanian and Shanmugam Mayilraj Genome sequencing and annotation of Acinetobacter haemolyticus strain MTCC 9819T. Elsevier: Genomics Data.
 
Indu Khatri, Nitin Kumar Singh, Srikrishna Subramanian and Shanmugam Mayilraj  Genome sequencing and annotation of Acinetobacter junii strain MTCC 11364. Elsevier: Genomics Data.
 
Navjot Kaur, Amit Arora, Narender Kumar and Shanmugam Mayilraj 
Genome sequencing and annotation of Laceyella sacchari strain GS 1-1, isolated from hot spring, Chumathang, Leh, India.  Elsevier: Genomics Data.
 
Navjot Kaur, Shailesh Kumar and Shanmugam Mayilraj 
Genome sequencing and annotation of Amycolatopsis vancoresmycina strain DSM 44592T. Elsevier: Genomics Data.
 
Indu Khatri, Srikrishna Subramanian and Shanmugam Mayilraj 
Genome sequencing and annotation of Amycolatopsis azurea  DSM 43854T.  Elsevier: Genomics Data.
 
Kazuyuki Kimura, Shailesh Kumar, Masahiro Takeoand Shanmugam Mayilraj  Genome sequencing, annotation of Citrobacter freundii strain GTC 09479. Elsevier: Genomics Data.

 

Choudhury, A. R.; Bhattacharjee, P. and Prasad, G. S. 

Development of Suitable Solvent System for Downstream Processing of Biopolymer Pullulan Using Response Surface Methodology. PLOS ONE 


Mehta, Ananya.;  Prasad, G.S. and Choudhury, A. R.

Cost effective production of pullulan from agri-industrial residues using response surface methodology. International Journal of Biological Macromolecules

 

Kumar, S.; Kanudia, P.; Karthokeyan, S. and Chakraborti P.K.

Identification of crucial amino acids of bacterial peptide deformylases affecting enzymatic activity in response to oxidative stress. J. Bacteriology


Aneja, R.; Datt, M.; Yadav, S. and Sahni, G.

Multiple exosites distributed across the three domains of streptokinase co-operate to generate high catalytic rates in the streptokinase-plasmin activator complex. Biochemistry.


Kaur, C.; Pinnaka, A.K.; Singh, N.K.; Bala, M. and Shanmugam Mayilraj Agromyces arachidis sp. nov., isolated from a peanut (Arachis hypogaea) crop field. Int. J. Microbiol.         


Singh, N.K.; Khatri, I.; Subramanian, S.  and Shanmugam Mayilraj

Genome sequencing and annotation of Acinetobacter gyllenbergii strain MTCC 11365T. Genomics Data.


Singh, N.K.; Khatri, I.; Subramanian, S.  and Shanmugam Mayilraj

Genome sequencing and annotation of Acinetobacter guillouiae strain MSP 4-18. Genomics Data. 

 

Ansari, Md. A.; Khan, H.M.; Khan, A.A.; Ahmad, Md. K.; Mahdi, A.A.; Pal, R. and Cameotra, S.S.

Interaction of silver nanoparticles with Escherichia coli and their cell envelope biomolecules. J. Basic Microbiology.


Khan, Md. S. A.; Ahmad, I.; and Cameotra, S.S.

Phenyl aldehyde and propanoids exert multiple sites of action towards cell membrane and cell wall targeting ergosterol in Candida albicans. AMB Express.


Noorpreet, I.; Kaur, D.; Kaur, P.; Sud, D. and Cameotra, S.S.

Persistence and Biodegradation of Quinalphos using Soil Microbes. Water  Environment.


Dhanjal, S.; Singh, A.K. and Cameotra, S. S.

Global gene expression analysis of bacterial stress response to elevated concentrations of toxic metalloids-Selenium and Arsenic. Geomicrobiology

 

Malhotra, A.; Dolma, K.;  Kaur, N.; Rathore, Y.S.; Ashish, S. Mayilraj and Choudhury, A.R.

Biosynthesis of gold and silver nanoparticles using a novel marine strain of Stenotrophomonas.  Bioresource Technology 


 
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