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PUBLICATIONS DURING 2009

 

Srinivasan, V.B.; Rajamohan, G.; Gebreyes, W.A.
Role of AbeS, a novel efflux pump of  the SMR family of transporters, in resistance to antimicrobial agents in Acinetobacter baumannii. Antimicrob Agents Chemother. 53, 5312-5316, 2009.

Rajamohan, G.; Srinivasan, V.B. and Gebreyes, W.A.
Biocide-tolerant multidrug-resistant  Acinetobacter baumannii clinical strains are associated with higher biofilm formation. J. Hosp. Infect., 73, 287-289, 2009.

Srinivasan, V.B.; Rajamohan, G.; Pancholi, P.; Stevenson, K.; Tadesse, D.; Patchanee, P.; Marcon, M. and Gebreyes, W.A.
Genetic relatedness and molecular characterization of multidrug resistant Acinetobacter baumannii isolated in central Ohio, USA., Ann Clin Microbiol Antimicrob. 8:21,2009 

 

Newcombe, D.; Dekas, A..; Mayilraj, S. and Venkateswaran, K.
Bacillus canaveralius sp. nov., an alkali-tolerant bacterium isolated from a spacecraft assembly facility. Int J Syst Evol Microbiol; 59, 2015-2019, 2009.

 
Fazlurrahman, F.; Batra, M.; Pandey, J.; Suri, C.R. and Jain R.K.
Isolation and characterization of an atrazine degrading Rhodococcus sp. strain MB-P1 from contaminated soil. Lett. Appl. Microbial., 49, 721-729, 2009.

 

Chauhan, J.S.; Mishra, N.K. and Raghava, G.P.S.
Identification of ATP binding residues of a protein from its primary sequence. BMC Bioinformatics.10, 434, 2009.

 

Ahmed, F.; Ansari, H.R. and Raghava, G.P.S..
Prediction of guide strand of microRNAs from its sequence and secondary structure. BMC Bioinformatics,10, 105, 2009.

 

Gowthaman, U. and  Agrewala, J.N.
In silico methods for predicting T-cell epitopes: Dr Jekyll or Mr Hyde? Expert Rev Proteomics. 6, 527-537, 2009.

 

Rashid, M.; Singla, D.; Sharma, A.; Kumar, M. and Raghava, G.P.S.
Hmrbase: a database of hormones and their receptors. BMC Genomics.10, 307, 2009.

 

Kapoor, D.; Singh, B.; Subramanian, K. and Guptasarma. P.
Creation of a new eye lens crystallin (Gambeta) through structure-guided mutagenic grafting of the surface of betaB2 crystallin onto the hydrophobic core of gammaB crystallin. FEBS J., ;276, 3341-3353, 2009.

 

Chandrayan, S.K. and Guptasarma, P.
Attenuation of ionic interactions profoundly lowers the kinetic thermal stability of Pyrococcus furiosus triosephosphate isomerase. Biochim. Biophys. Acta., 1794, 905-912, 2009.

 

Kaur, J.; Srikanth, C.V., and Bachhawat, A.K.
Differential roles played by the native cysteine residues of the yeast glutathione transporter, Hgt1p. FEMS Yeast Res., 9, 849-866, 2009.

 

Gupta, S.; Pathak, A.; Sinha, A. and Sarkar, D.
Mycobacterium tuberculosis PhoP recognizes two adjacent direct-repeat sequences to form head-to-head dimmers. J. Bacteriol., 9, 7466-7476, 2009. 

 

Ho P.C.; Lin, Y.W.; Tsui, Y.C.; Gupta, P.; Wei, L.N.
A Negative Regulatory Pathway of GLUT4 Trafficking in Adipocyte: New Function of RIP140 in the Cytoplasm via AS160. Cell Metab.,  10, 516-523, 2009. 

 

Aneja, R.; Datt, M.; Singh, B.; Kumar, S. and Sahni, G.
Identification of a new exosite involved in catalytic turnover by the streptokinase-plasmin activator complex during human plasminogen activation. J. Biol. Chem., 284, 32642-32650, 2009.

Arora, P.K.;  Kumar, M.; Chauhan, A.; Ragava G.P. and Jain. R.K.
OxDBase: a database of oxygenases involved in biodegradation. BMC Res Notes. 2, 67-69, 2009.

Rajpara, N., Patel, A.;Tiwari, N.; bahuguna, J.; Antony, A.; Choudhury, I.; Ghosh, A.; Jain, R.K.; Ghosh, A. and   Bhardwaj, A.K.
Mechanism of drug resitance in a clinical isolate of Vibrio fluvialis: involvement of multiple plasmid and integrons. Int. J.  Antimicrob. Agents. 34, 220-225, 2009.

Kalia, S.B.; Kaushal, G.; Kumar, M.; Cameotra, S.S.; Sharma, A.; Verma, M.L. and Kanwar, S.S.
Antimicrobial and toxicological studies of some metal complexes of 4- methylpiperazine-1-carbodithioate and phenanthroline mixed ligands. Brazilian Journal of Microbiology. 40, 916-922, 2009.

Kaur, H.; Kumar, C.; Junot, C.; Toledano, M. and Bachhawat, A.K.
Dug1p is a Cys-Gly peptidase of the gamma -glutamyl cycle of Saccharomyces cerevisiae, and represents a novel family of Cys-Gly peptidases. J. Biol. Chem., 284,14493-14502, 2009.

Goyal, D.; Sahni, G. and Sahoo, D.K.
Enhanced production of recombinant streptokinase in Escherichia coli using fed-batch cultivation. Bioresource Technol., 100, 4468-4474, 2009.

Mannan, M.A.; Sharma, S. and Ganesan, K.
Total RNA isolation from recalcitrant yeast cells. Anal. Biochem.389, 77-79, 2009

Nangia, Y.; Wangoo, N.; Goyal, N.; Shekhawat, G. and Suri, C.R.
A novel bacterial isolate stenotrophomonas maltophilia as living factory for synthesis of gold nanoparticles. Microbial. Cell Factories, 8, 39, 2009.

Newcombe, D.; Dekas, A..; Mayilraj, S. and Venkateswaran, K.
Bacillus canaveralius sp. nov., an alkali-tolerant bacterium isolated from a spacecraft assembly facility. Int J Syst Evol Microbiol; 59, 2015 . 2019, 2009.

Land, M.; Lapidus, A.; Mayilraj, S.; Chen, F.; Copeland, A.; Del Rio, T.G.; Nolan, M.; Lucas, S.; Tice, H.; Cheng, J.; Chertkov, O; Bruce, D; Goodwin, L; Pitluck, S.; Rohde, M.; Göker, M; Pati, A.; Ivanova, N.; Mavromatis, K; Chen, A; Palaniappan, K.; Hauser, L.; Chang, Y.; Jeffries, C.C.; Brettin, T.; Detter, G.C.; Han, C.; Chain, P.; Tindall, B.J.; Bristow, J.; Eisen, J.A.; Markowitz, V.; Hugenholtz, P.; Kyrpides, N.C. and Hans-Peter Klenk
Complete genome sequence of Actinosynnema mirum type strain (101T). Standards in Genomic Science, 1, 46-53, 2009.

Kumaran, S.; Hankuil, Y.; Krishnan, H.B. and Joseph, M.J.
Assembly of the cysteine synthase complex and the regulatory role of protein-protein interactions. J. Biol. Chem., 284, 10268-10275, 2009.

Cameotra, S.S. and Singh, P.
Synthesis of Rhamnolipid Biosurfactant and mode of Hexadecane Uptake by a Pseudomonas sp. Microb. Cell Fact., 8:16, 2009.

Kaundal, R. and Raghava, G.P.S.
RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information. Proteomics, 9, 2324-2342, 2009.

Mayilraj, S.; Kaksonen, A.H.; Cord-Ruwisch, R.; Schumann, P.; Spröer, C.; Tindall, B.J. and Spring, S.
Desulfonauticus autotrophicus sp. nov., a novel thermophilic sulfate-reducing bacterium isolated from oil-production water and emended description of the genus Desulfonauticus. Extremophiles, 13, 247-255, 2009.

Krishnamurthi, S.; Bhattacharya, A.; Mayilraj, S.; Saha, P.; Schumann, P. and Chakrabarti, T.
Description of Paenisporosarcina quisquiliarum gen. nov., sp. nov., and reclassification of Sporosarcina macmurdoensis Reddy et al. 2003 as Paenisporosarcina macmurdoensis comb. nov. Int. J. Syst. Evol. Microbiol., 59, 1364-1370, 2009.

Krishnamurthi, S.; Chakrabarti, T. and Stackebrandt, E.
Re-examination of taxonomic position of Bacillus silvestris Rheims et al. 1999 and proposal to transfer it to a new genus Solibacillus gen nov. as Solibacillus silvestris comb. nov. Int. J. Syst. Evol. Microbiol., 59, 1054-1058, 2009.

Pandey, J.; Chauhan, A. and Jain R.K.
Integrative approaches for assessing ecological sustainability of in situ bioremediation. FEMS Microbial. Rev., 32, 324-375, 2009.

Patnaik, P.R.
Cognitive optimization of microbial PHB production in an optimally dispersed bioreactor by single and mixed cultures. Bioprocess Biosyst. Eng., 32, 557-568, 2009.

Dubey, R.N.; Nakwal, N.; Bisht, K.K.; Saini, A.; Haldar, S. and Singh, J.
Interaction of APC/C-E3 ligase with Swi6/HP1 and Clr4/Suv39 in heterochromatin assembly in fission yeast. J. Biol. Chem., 284, 7165-7176, 2009.

Chatterjee, S.; Barbora, L.; Cameotra, S.S. and Goswami, P
Silk-fiber immobilized lipase-catalysed hydrolysis of emulsified sunflower oil. Appl. Biochem. Biotechnol., 157, 593-600, 2009.

Moon, L.S.; Jolly, R.S.; Kasetti, Y. and Bharatam, P.V.
A new chiral shift reagent for the determination of enantiomeric excess and absolute configuration in cyanohydrins. Chem. Commun. (Camb)., 7, 1067-1069, 2009.

Pawan Gupta; Ping-Ching Ho; Sung, Gil Ha; Yi-Wei Lin and Li-Na Wei
HDAC3 as a molecular chaperone for shuttling phosphorylated TR2 to PML: A novel deacetylase activity-independent function of HDAC3. PLoS ONE, 4, e4363, 2009.

Patnaik, P.R.
A hybrid simulator for improved filtering of noise from oscillating microbial fermentations. Biochem. Eng. J., 39, 389-396, 2008.

Rishi, L.; Gahlot, S.; Kathania, M. and Majumdar, S.
Pentoxifylline induces apoptosis in vitro in cutaneous T cell lymphoma (HuT-78) and enhances FasL mediated killing by upregulating Fas expression. Biochem Pharmacol., 77, 30-45. 2009.

Kaur J, Bachhawat AK.
A modified Western blot protocol for enhanced sensitivity in the detection of a membrane protein. Anal. Biochem., 384, 348-349, 2009.

Patnaik, P.R.
Transient response analysis of the eukaryotic chemosensory system to intra-cellular fluctuations. J. Bioinform. Comput. Biol., 7, 93-105, 2009.

Kumar, M. and Raghava, G.P.S.
Prediction of Nuclear Proteins using SVM and HMM Models. BMC Bioinformatics. 10, 22, 2009

Garg, S.K.; Alam, M.S.; Bajpai, R.;Radhakishan, K.V. and Agrawal,P.
Redox Biology of Mycobacterium tuberculosis H37Rv: protein-protein interaction between GlgB and WhiB1 involves exchange of thiol-disulfide. BMC Biochem, 10, 1, 2009.

Singh, P.; Dhanjal, S.; Singh, K.V.; Suri, C.R. and Cameotra, S.S.
Monitoring atrazine uptake by a new fluorometric assay. Current Science. 96, 268-271, 2009.

Singh, G.; Thakur, M.; Chakraborti, P.K. and Dey, C.S.
Evidence for the presence of R250G mutation at the ATPase domain of topoisomerase II in an arsenite-resistant Leishmania donovani exhibiting a differential drug inhibition profile. Int. J. Antimicrob. Agents. 33, 80-85, 2009.

Alam, M.S.; Garg, S.K. and Agrawal, P.
Studies on structural and functional divergence among seven WhiB proteins of Mycobacterium tuberculosis H37Rv. FEBS Journal. 276, 76-93, 2009.

Minhas, A.; Biswas, D. and Mondal, A.K.
Development of host and vector for high efficiency transformation and gene disruption in Debaryomyces hansenii. FEMS Yeast Res., 9, 95-102, 2009.

 
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